Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGGCCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAACTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTCTTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA
mRNA sequence
ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGGCCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAACTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTCTTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA
Coding sequence (CDS)
ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGGCCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAACTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTCTTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA
Protein sequence
MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLDYCMVILQDNA
Homology
BLAST of PI0000936 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY+QG +DIMG+RP+RS+E RTGSSGSKRK+GG VE +E+IR+VM+++ND+LKAI
Sbjct: 35 MYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAI 94
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
EW Q +D + +V QLQ IPELSR D V M+ILM NV DMKAFL I +ELKLD
Sbjct: 95 VEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLD 154
Query: 121 YCMVILQDNA 131
YC +I QDNA
Sbjct: 155 YCTIIFQDNA 164
BLAST of PI0000936 vs. ExPASy TrEMBL
Match:
A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 9.8e-28
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MYNQG S +D+MG+R E R SSGSKRKR GH+ ++ ++IR++++Y N+QL I
Sbjct: 195 MYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLNHI 254
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
AEWP Q +D + TR +V QL+ IPEL+ +D MRILMRNV DMKAFL +PN +K
Sbjct: 255 AEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMKYP 314
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 315 YCSIILQEN 323
BLAST of PI0000936 vs. ExPASy TrEMBL
Match:
A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY+ G SP+D+M +R R SE R SSGSKRKR GH ++ +++R+ M+Y N+QL I
Sbjct: 144 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRI 203
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
AEWP Q +D T TR IV QL+ IPEL+ +D MRI+MRNV DMKAFL++P+ +K
Sbjct: 204 AEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYP 263
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 264 YCSIILQEN 272
BLAST of PI0000936 vs. ExPASy TrEMBL
Match:
A0A5A7UJB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005120 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY++G SP+D+M +R R SE R SSGSKRKR GH ++ +++R+ ++Y N+QL I
Sbjct: 1 MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
AEWP Q +D T TR IV QL+ IPEL+ +D MRILMRNV DMKAFL++P+ +K
Sbjct: 61 AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 121 YCNIILQEN 129
BLAST of PI0000936 vs. ExPASy TrEMBL
Match:
A0A5A7UPP6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00090 PE=4 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 66/129 (51.16%), Postives = 91/129 (70.54%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY+QG S +D+MG+R R E + SSGSKRKR GH+V++ ++IR+ ++Y N+QL I
Sbjct: 30 MYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRI 89
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
EWP Q +D + TR +V QL+ IPEL+ +D H MRILM NV DMKAFL +P+ +K
Sbjct: 90 VEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYP 149
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 150 YCSIILQEN 158
BLAST of PI0000936 vs. NCBI nr
Match:
KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 148.7 bits (374), Expect = 3.6e-32
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY+QG +DIMG+RP+RS+E RTGSSGSKRK+GG VE +E+IR+VM+++ND+LKAI
Sbjct: 35 MYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAI 94
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
EW Q +D + +V QLQ IPELSR D V M+ILM NV DMKAFL I +ELKLD
Sbjct: 95 VEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLD 154
Query: 121 YCMVILQDNA 131
YC +I QDNA
Sbjct: 155 YCTIIFQDNA 164
BLAST of PI0000936 vs. NCBI nr
Match:
KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MYNQG S +D+MG+R E R SSGSKRKR GH+ ++ ++IR++++Y N+QL I
Sbjct: 195 MYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLNHI 254
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
AEWP Q +D + TR +V QL+ IPEL+ +D MRILMRNV DMKAFL +PN +K
Sbjct: 255 AEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMKYP 314
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 315 YCSIILQEN 323
BLAST of PI0000936 vs. NCBI nr
Match:
KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 132.5 bits (332), Expect = 2.6e-27
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY+ G SP+D+M +R R SE R SSGSKRKR GH ++ +++R+ M+Y N+QL I
Sbjct: 144 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRI 203
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
AEWP Q +D T TR IV QL+ IPEL+ +D MRI+MRNV DMKAFL++P+ +K
Sbjct: 204 AEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYP 263
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 264 YCSIILQEN 272
BLAST of PI0000936 vs. NCBI nr
Match:
KAA0054687.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 131.7 bits (330), Expect = 4.5e-27
Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY++G SP+D+M +R R SE R SSGSKRKR GH ++ +++R+ ++Y N+QL I
Sbjct: 1 MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
AEWP Q +D T TR IV QL+ IPEL+ +D MRILMRNV DMKAFL++P+ +K
Sbjct: 61 AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 121 YCNIILQEN 129
BLAST of PI0000936 vs. NCBI nr
Match:
KAA0055439.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08921.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 66/129 (51.16%), Postives = 91/129 (70.54%), Query Frame = 0
Query: 1 MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
MY+QG S +D+MG+R R E + SSGSKRKR GH+V++ ++IR+ ++Y N+QL I
Sbjct: 30 MYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRI 89
Query: 61 AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
EWP Q +D + TR +V QL+ IPEL+ +D H MRILM NV DMKAFL +P+ +K
Sbjct: 90 VEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYP 149
Query: 121 YCMVILQDN 130
YC +ILQ+N
Sbjct: 150 YCSIILQEN 158
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V469 | 1.7e-32 | 60.77 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TDD6 | 9.8e-28 | 52.71 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TYQ6 | 1.3e-27 | 52.71 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7UJB1 | 2.2e-27 | 52.71 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7UPP6 | 2.8e-27 | 51.16 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060529.1 | 3.6e-32 | 60.77 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... | [more] |
KAA0041444.1 | 2.0e-27 | 52.71 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... | [more] |
KAA0048280.1 | 2.6e-27 | 52.71 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0054687.1 | 4.5e-27 | 52.71 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0055439.1 | 5.9e-27 | 51.16 | retrotransposon protein [Cucumis melo var. makuwa] >TYK08921.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |