PI0000936 (gene) Melon (PI 482460) v1

Overview
NamePI0000936
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr10: 6379289 .. 6379681 (+)
RNA-Seq ExpressionPI0000936
SyntenyPI0000936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGGCCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAACTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTCTTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA

mRNA sequence

ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGGCCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAACTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTCTTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA

Coding sequence (CDS)

ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGGCCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAACTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTCTTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA

Protein sequence

MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLDYCMVILQDNA
Homology
BLAST of PI0000936 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY+QG     +DIMG+RP+RS+E RTGSSGSKRK+GG  VE +E+IR+VM+++ND+LKAI
Sbjct: 35  MYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAI 94

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
            EW   Q +D +     +V QLQ IPELSR D V  M+ILM NV DMKAFL I +ELKLD
Sbjct: 95  VEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLD 154

Query: 121 YCMVILQDNA 131
           YC +I QDNA
Sbjct: 155 YCTIIFQDNA 164

BLAST of PI0000936 vs. ExPASy TrEMBL
Match: A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.8e-28
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MYNQG   S +D+MG+R     E R  SSGSKRKR GH+ ++ ++IR++++Y N+QL  I
Sbjct: 195 MYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLNHI 254

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
           AEWP  Q +D + TR  +V QL+ IPEL+ +D    MRILMRNV DMKAFL +PN +K  
Sbjct: 255 AEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMKYP 314

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 315 YCSIILQEN 323

BLAST of PI0000936 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY+ G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ M+Y N+QL  I
Sbjct: 144 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRI 203

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
           AEWP  Q +D T TR  IV QL+ IPEL+ +D    MRI+MRNV DMKAFL++P+ +K  
Sbjct: 204 AEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYP 263

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 264 YCSIILQEN 272

BLAST of PI0000936 vs. ExPASy TrEMBL
Match: A0A5A7UJB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005120 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY++G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ ++Y N+QL  I
Sbjct: 1   MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
           AEWP  Q +D T TR  IV QL+ IPEL+ +D    MRILMRNV DMKAFL++P+ +K  
Sbjct: 61  AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 121 YCNIILQEN 129

BLAST of PI0000936 vs. ExPASy TrEMBL
Match: A0A5A7UPP6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00090 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 66/129 (51.16%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY+QG   S +D+MG+R  R  E +  SSGSKRKR GH+V++ ++IR+ ++Y N+QL  I
Sbjct: 30  MYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRI 89

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
            EWP  Q +D + TR  +V QL+ IPEL+ +D  H MRILM NV DMKAFL +P+ +K  
Sbjct: 90  VEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYP 149

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 150 YCSIILQEN 158

BLAST of PI0000936 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-32
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY+QG     +DIMG+RP+RS+E RTGSSGSKRK+GG  VE +E+IR+VM+++ND+LKAI
Sbjct: 35  MYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAI 94

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
            EW   Q +D +     +V QLQ IPELSR D V  M+ILM NV DMKAFL I +ELKLD
Sbjct: 95  VEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLD 154

Query: 121 YCMVILQDNA 131
           YC +I QDNA
Sbjct: 155 YCTIIFQDNA 164

BLAST of PI0000936 vs. NCBI nr
Match: KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MYNQG   S +D+MG+R     E R  SSGSKRKR GH+ ++ ++IR++++Y N+QL  I
Sbjct: 195 MYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLNHI 254

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
           AEWP  Q +D + TR  +V QL+ IPEL+ +D    MRILMRNV DMKAFL +PN +K  
Sbjct: 255 AEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMKYP 314

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 315 YCSIILQEN 323

BLAST of PI0000936 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-27
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY+ G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ M+Y N+QL  I
Sbjct: 144 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRI 203

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
           AEWP  Q +D T TR  IV QL+ IPEL+ +D    MRI+MRNV DMKAFL++P+ +K  
Sbjct: 204 AEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYP 263

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 264 YCSIILQEN 272

BLAST of PI0000936 vs. NCBI nr
Match: KAA0054687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 4.5e-27
Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY++G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ ++Y N+QL  I
Sbjct: 1   MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
           AEWP  Q +D T TR  IV QL+ IPEL+ +D    MRILMRNV DMKAFL++P+ +K  
Sbjct: 61  AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 121 YCNIILQEN 129

BLAST of PI0000936 vs. NCBI nr
Match: KAA0055439.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08921.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 66/129 (51.16%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 1   MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAI 60
           MY+QG   S +D+MG+R  R  E +  SSGSKRKR GH+V++ ++IR+ ++Y N+QL  I
Sbjct: 30  MYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLNRI 89

Query: 61  AEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAFLQIPNELKLD 120
            EWP  Q +D + TR  +V QL+ IPEL+ +D  H MRILM NV DMKAFL +P+ +K  
Sbjct: 90  VEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMKYP 149

Query: 121 YCMVILQDN 130
           YC +ILQ+N
Sbjct: 150 YCSIILQEN 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V4691.7e-3260.77Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDD69.8e-2852.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TYQ61.3e-2752.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UJB12.2e-2752.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UPP62.8e-2751.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0060529.13.6e-3260.77retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
KAA0041444.12.0e-2752.71retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... [more]
KAA0048280.12.6e-2752.71retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054687.14.5e-2752.71retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0055439.15.9e-2751.16retrotransposon protein [Cucumis melo var. makuwa] >TYK08921.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000936.1PI0000936.1mRNA