PI0000871 (gene) Melon (PI 482460) v1

Overview
NamePI0000871
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr05: 11929583 .. 11931073 (+)
RNA-Seq ExpressionPI0000871
SyntenyPI0000871
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAATCCGTCAAATCATGTTCCACACCTTCACGTTCTTAATCTTCTCACAACCTCGATCTTTCACCTTCACATTTTTAACTGTCTCACTTTGCAGAACCTCACTCTTCGTCTAAAAAATTGGCTCACATTTTCTCATATCAAGCCCCTTCCCCTGGAAATTTGGCCTTCAATACAGGCAGTCATTCCATTTTCATAGCTGATGATAATTTCTTTGTGATTGAACTTGGTCAAAATCTAGATAGTCGTCATCCTTTGGCATTGGGATTCGACGAGGCAAAGAATCGGGGAGGAAGTTTAAGAAGGTTATGAGTATTGGGATGGGTGTATTGACATGATCGGAAATAATTGTTTGAAACCTGAAATCCATTAAAACTCTATTAGTAAAGTCTCAATATTAAGCCTTTCTTTTTCTTTGACACTTATAAAAGCAATTTCATCTCTTTGTTTATTTTTCTTATTCAATTTATTTCTTAAATTTTGTTTGTTAAGAAAGTATCCAACATATTTGTTTATTTTTCTTATTCAATTTATTTCTTAAATTTTGTTTGTTAAGAAAGTATCCAACATATCAAGTGTGGATCAATAGCGTATTGAGTGTATATATATATCGTGTACATCAATAATATATCGAGAAGTATCAAGTGTGTATCAAATGCATCCGATGTATCAAGTATTGAGAGTGTATCATATGTATTTGTATATTTTTTATATTTCTCTTTTTAAATTGTGGGTTGAACTTTTTTTTTTTTTTTAATTTATTTTCCAAAACTAAAAAAAATTTAGGTAATTGGACAAATTTAATCAATTTATTTTTTTAAAATAGTCGCATGTATAACAATTAAATTAAAAAATTAACCTATATAACAACATTTAAAAAAAATTTATAAATATAACAAACTTGTTAGTTTATTAATAATAAACTATATTGCAAGTATTGAGGTAATTGTATTTATTTATTTATTTATTTTGAGGCGGTTTTGTTGAATGTAAAATATGAAAGTTAAAAAGGATAAAAATTGTATTTTGGAAGAAAAAAAGAAGATAAAATTGGAAAGGAATTAATGAAGTTAAAAGTTGGTAAGGTCAGGCGTAGATATTGAGTTGACGCGGAATGAGAAAGGAAATTACGAAAATAGGGTGGAGGTGGTTGGATTGGATTGGATTGGATTGGACGCAAAGACGTGGAAGTTTCAAGCGAAGAAAACTCCGGCTGCATATATGGAACCAGGTCTACTGTGCTCCAAATTCCGCCTTATTTTAAAGTCTTTTTGTGGAATCTTCTTCTACATTAACCAACACCCATCTCTTCTCTTCCATTTTTACTCTCAAACGCGCTTTCCTTTTTCGTCGTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCCAGGTTTGTATTTCTCTTTTCTCCCCTTCAATTTCCATCTTCTCAATCTTTATCATCCTCTAACTCATCCACTCCTCTTTCTAGGGTTTCTTTCTTCTCTTGA

mRNA sequence

ATGGGAAAATCCGTCAAATCATGTTCCACACCTTCACAACCTCACTCTTCGTCTAAAAAATTGGCTCACATTTTCTCATATCAAGCCCCTTCCCCTGGAAATTTGGCCTTCAATACAGGCAGTCATTCCATTTTCATAGCTGATGATAATTTCTTTGTGATTGAACTTGGTCAAAATCTAGATAGTCGTCATCCTTTGGCATTGGGATTCGACGAGGCAAAGAATCGGGGAGGAAGTTTAAGAAGGTCAGGCGTAGATATTGAGTTGACGCGGAATGAGAAAGGAAATTACGAAAATAGGGTGGAGGTGGTTGGATTGGATTGGATTGGATTGGACGCAAAGACGTGGAAGTTTCAAGCGAAGAAAACTCCGGCTGCATATATGGAACCAGGTCTACTGTGCTCCAAATTCCGCCTTATTTTAAAGTCTTTTTGTGGAATCTTCTTCTACATTAACCAACACCCATCTCTTCTCTTCCATTTTTACTCTCAAACGCGCTTTCCTTTTTCGTCGTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCCAGGGTTTCTTTCTTCTCTTGA

Coding sequence (CDS)

ATGGGAAAATCCGTCAAATCATGTTCCACACCTTCACAACCTCACTCTTCGTCTAAAAAATTGGCTCACATTTTCTCATATCAAGCCCCTTCCCCTGGAAATTTGGCCTTCAATACAGGCAGTCATTCCATTTTCATAGCTGATGATAATTTCTTTGTGATTGAACTTGGTCAAAATCTAGATAGTCGTCATCCTTTGGCATTGGGATTCGACGAGGCAAAGAATCGGGGAGGAAGTTTAAGAAGGTCAGGCGTAGATATTGAGTTGACGCGGAATGAGAAAGGAAATTACGAAAATAGGGTGGAGGTGGTTGGATTGGATTGGATTGGATTGGACGCAAAGACGTGGAAGTTTCAAGCGAAGAAAACTCCGGCTGCATATATGGAACCAGGTCTACTGTGCTCCAAATTCCGCCTTATTTTAAAGTCTTTTTGTGGAATCTTCTTCTACATTAACCAACACCCATCTCTTCTCTTCCATTTTTACTCTCAAACGCGCTTTCCTTTTTCGTCGTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCCAGGGTTTCTTTCTTCTCTTGA

Protein sequence

MGKSVKSCSTPSQPHSSSKKLAHIFSYQAPSPGNLAFNTGSHSIFIADDNFFVIELGQNLDSRHPLALGFDEAKNRGGSLRRSGVDIELTRNEKGNYENRVEVVGLDWIGLDAKTWKFQAKKTPAAYMEPGLLCSKFRLILKSFCGIFFYINQHPSLLFHFYSQTRFPFSSSSSSSPSSSSSRVSFFS
Homology
[Close]
BLAST of PI0000871 vs. ExPASy TrEMBL
Match: A0A0A0LKU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G100590 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-15
Identity = 73/162 (45.06%), Postives = 90/162 (55.56%), Query Frame = 0 

Query: 30  PSPGNLAFNTGSHSIFIADDNFF--VIELGQNLDSRHPLALGFDEAKNRGGSLRR-SGVD 89
           PS G+LA      SI IA++ F+  + ELGQ++DS H LALGFD+AKN+G SL++   VD
Sbjct: 28  PSRGDLAL-YADRSISIANEFFYFRLNELGQSVDSCHLLALGFDKAKNQGESLKKVRSVD 87

Query: 90  IELTRNEKGNYENRVEVVGLDWIGLDAKTWKFQAKKTPAAYMEPGLLCSKFRLILKSFCG 149
           IELTR EKG YENRVEVVGLDWIG        +   T                +L  F  
Sbjct: 88  IELTRKEKGIYENRVEVVGLDWIGRKDVEVSSEENST----------------LLLHFPH 147

Query: 150 IFFYINQHPSLLFHFYSQTRFPFSSSSSSSPSSSSSRVSFFS 189
           +FF  +          S   FP SS+   + S SSSRVSFFS
Sbjct: 148 LFFVHSSSTLTTTPISSIFPFPISSTLKRAFSFSSSRVSFFS 172

[Close]
BLAST of PI0000871 vs. NCBI nr
Match: KGN61377.1 (hypothetical protein Csa_006168 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 9.7e-15
Identity = 73/162 (45.06%), Postives = 90/162 (55.56%), Query Frame = 0 

Query: 30  PSPGNLAFNTGSHSIFIADDNFF--VIELGQNLDSRHPLALGFDEAKNRGGSLRR-SGVD 89
           PS G+LA      SI IA++ F+  + ELGQ++DS H LALGFD+AKN+G SL++   VD
Sbjct: 28  PSRGDLAL-YADRSISIANEFFYFRLNELGQSVDSCHLLALGFDKAKNQGESLKKVRSVD 87

Query: 90  IELTRNEKGNYENRVEVVGLDWIGLDAKTWKFQAKKTPAAYMEPGLLCSKFRLILKSFCG 149
           IELTR EKG YENRVEVVGLDWIG        +   T                +L  F  
Sbjct: 88  IELTRKEKGIYENRVEVVGLDWIGRKDVEVSSEENST----------------LLLHFPH 147

Query: 150 IFFYINQHPSLLFHFYSQTRFPFSSSSSSSPSSSSSRVSFFS 189
           +FF  +          S   FP SS+   + S SSSRVSFFS
Sbjct: 148 LFFVHSSSTLTTTPISSIFPFPISSTLKRAFSFSSSRVSFFS 172

[Close]
BLAST of PI0000871 vs. NCBI nr
Match: XP_038875603.1 (RING-H2 finger protein ATL16-like [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-05
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 28  QAPSPGNLAFNTGSHSIFIADDNFFVIELGQNLDSRHPLALGFDEAKNRGGSLRR 83
           QAPSP +L  NTGSH I +AD+NF VIELG+NLD R   ALG  EA   G   ++
Sbjct: 165 QAPSPQDLGLNTGSH-ISVADENFVVIELGRNLDRRRHPALGSSEAAESGRKFKK 218

The following BLAST results are available for this feature:
BLAST of PI0000871 vs.
Match NameE-valueIdentityDescription
BLAST of PI0000871 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKU74.7e-1545.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G100590 PE=4 SV=1[more]
BLAST of PI0000871 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61377.19.7e-1545.06hypothetical protein Csa_006168 [Cucumis sativus][more]
XP_038875603.15.4e-0556.36RING-H2 finger protein ATL16-like [Benincasa hispida][more]
BLAST of PI0000871 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000871.1PI0000871.1mRNA