PI0000733 (gene) Melon (PI 482460) v1

Overview


Name	PI0000733
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr10: 870721 .. 871107 (+)
RNA-Seq Expression	PI0000733
Synteny	PI0000733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATGTTCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTGAGGGATGCATATGACCGTTGGACAAAGGCCAATGAAAAGGCTCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACAAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAATATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCAGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTTAA

mRNA sequence

ATGGAGGAATGTTCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTGAGGGATGCATATGACCGTTGGACAAAGGCCAATGAAAAGGCTCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACAAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAATATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCAGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTTAA

Coding sequence (CDS)

ATGGAGGAATGTTCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTGAGGGATGCATATGACCGTTGGACAAAGGCCAATGAAAAGGCTCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACAAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAATATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCAGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTTAA

Protein sequence

MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

Homology

[Close]

BLAST of PI0000733 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEEC P P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQPSIQI+ +AIKYVYNARMKEGQSVRE+VL M+V FNVAE N A+ DE+SQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 ESLPKSFL 129
           +SL KSFL
Sbjct: 160 KSLSKSFL 167

[Close]

BLAST of PI0000733 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEEC P P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQPSIQI+ +AIKYVYNARMKEGQSVRE+VL M+V FNVAE N A+ DE+SQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 ESLPKSFL 129
           +SL KSFL
Sbjct: 160 KSLSKSFL 167

[Close]

BLAST of PI0000733 vs. ExPASy TrEMBL
Match: A0A5D3DDU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00010 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 97/128 (75.78%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           M+EC P P +NASQ+V+D YDRWTKAN+KA+VYILASMSD+LSKKHE MVT  QIMDSL+
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ SIQI+  AIKYVYNA MKEGQSVR++V+DM+V FNVAE NG V DE+SQ+SFIL
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFIL 169

Query: 121 ESLPKSFL 129
           +SLPKSFL
Sbjct: 170 KSLPKSFL 177

[Close]

BLAST of PI0000733 vs. ExPASy TrEMBL
Match: A0A5A7TIU9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00990 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.5e-46
Identity = 96/128 (75.00%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEEC P P +NASQ+V+DAYD W KAN++A++YILASMSD+LSKKHE MVT RQIMDSL+
Sbjct: 13  MEECPPFPTQNASQSVKDAYDCWIKANDEARLYILASMSDILSKKHEIMVTARQIMDSLR 72

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ SIQI+ +AIKY+YNARMKEGQSVRE+VL+M+V FNVA+ NGAV DE+SQVS+IL
Sbjct: 73  EMFGQSSIQIKQEAIKYLYNARMKEGQSVREHVLNMIVNFNVAQMNGAVFDEKSQVSYIL 132

Query: 121 ESLPKSFL 129
           +SLPK+FL
Sbjct: 133 KSLPKNFL 140

[Close]

BLAST of PI0000733 vs. ExPASy TrEMBL
Match: A0A5A7TJT4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00100 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.0e-46
Identity = 96/128 (75.00%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEECSP P +NASQ V+DAYD WTK N+KA++YILASMSD+LSKKHE MVT RQIMDS +
Sbjct: 13  MEECSPFPTQNASQGVKDAYDCWTKVNDKARLYILASMSDILSKKHEIMVTARQIMDSFR 72

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQPSIQI+ +AIKYVYNARMKEGQSV E+VLD+++ FNV E NG V DE+SQVS+IL
Sbjct: 73  EMFGQPSIQIKQEAIKYVYNARMKEGQSVTEHVLDIIINFNVVEMNGKVFDEKSQVSYIL 132

Query: 121 ESLPKSFL 129
           +SL KSFL
Sbjct: 133 KSLSKSFL 140

[Close]

BLAST of PI0000733 vs. NCBI nr
Match: TYK21841.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.5e-46
Identity = 97/128 (75.78%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           M+EC P P +NASQ+V+D YDRWTKAN+KA+VYILASMSD+LSKKHE MVT  QIMDSL+
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ SIQI+  AIKYVYNA MKEGQSVR++V+DM+V FNVAE NG V DE+SQ+SFIL
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFIL 169

Query: 121 ESLPKSFL 129
           +SLPKSFL
Sbjct: 170 KSLPKSFL 177

[Close]

BLAST of PI0000733 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.5e-46
Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEEC P P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQPSIQI+ +AIKYVYNARMKEGQSVRE+VL M+V FNVAE N A+ DE+SQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 ESLPKSFL 129
           +SL KSFL
Sbjct: 160 KSLSKSFL 167

[Close]

BLAST of PI0000733 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.5e-46
Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEEC P P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQPSIQI+ +AIKYVYNARMKEGQSVRE+VL M+V FNVAE N A+ DE+SQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 ESLPKSFL 129
           +SL KSFL
Sbjct: 160 KSLSKSFL 167

[Close]

BLAST of PI0000733 vs. NCBI nr
Match: KAA0041279.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK16077.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 7.3e-46
Identity = 96/128 (75.00%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEEC P P +NASQ+V+DAYD W KAN++A++YILASMSD+LSKKHE MVT RQIMDSL+
Sbjct: 13  MEECPPFPTQNASQSVKDAYDCWIKANDEARLYILASMSDILSKKHEIMVTARQIMDSLR 72

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQ SIQI+ +AIKY+YNARMKEGQSVRE+VL+M+V FNVA+ NGAV DE+SQVS+IL
Sbjct: 73  EMFGQSSIQIKQEAIKYLYNARMKEGQSVREHVLNMIVNFNVAQMNGAVFDEKSQVSYIL 132

Query: 121 ESLPKSFL 129
           +SLPK+FL
Sbjct: 133 KSLPKNFL 140

[Close]

BLAST of PI0000733 vs. NCBI nr
Match: KAA0041821.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK05343.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 96/128 (75.00%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEECSPSPVRNASQTVRDAYDRWTKANEKAQVYILASMSDVLSKKHESMVTTRQIMDSLQ 60
           MEECSP P +NASQ V+DAYD WTK N+KA++YILASMSD+LSKKHE MVT RQIMDS +
Sbjct: 13  MEECSPFPTQNASQGVKDAYDCWTKVNDKARLYILASMSDILSKKHEIMVTARQIMDSFR 72

Query: 61  EMFGQPSIQIRHKAIKYVYNARMKEGQSVREYVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
           EMFGQPSIQI+ +AIKYVYNARMKEGQSV E+VLD+++ FNV E NG V DE+SQVS+IL
Sbjct: 73  EMFGQPSIQIKQEAIKYVYNARMKEGQSVTEHVLDIIINFNVVEMNGKVFDEKSQVSYIL 132

Query: 121 ESLPKSFL 129
           +SL KSFL
Sbjct: 133 KSLSKSFL 140

The following BLAST results are available for this feature:

BLAST of PI0000733 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	1.2e-46	75.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	1.2e-46	75.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3DDU7	1.2e-46	75.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G000...	[more]
A0A5A7TIU9	3.5e-46	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00990...	[more]
A0A5A7TJT4	6.0e-46	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00100...	[more]

BLAST of PI0000733 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21841.1	2.5e-46	75.78	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0063887.1	2.5e-46	75.78	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	2.5e-46	75.78	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0041279.1	7.3e-46	75.00	gag/pol protein [Cucumis melo var. makuwa] >TYK16077.1 gag/pol protein [Cucumis ...	[more]
KAA0041821.1	1.2e-45	75.00	gag/pol protein [Cucumis melo var. makuwa] >TYK05343.1 gag/pol protein [Cucumis ...	[more]

BLAST of PI0000733 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 23..127 e-value: 5.1E-15 score: 55.4
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 12..127
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 12..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000733.1	PI0000733.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding