PI0000327 (gene) Melon (PI 482460) v1

Overview
NamePI0000327
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr11: 11583278 .. 11584775 (-)
RNA-Seq ExpressionPI0000327
SyntenyPI0000327
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCATGTTATCAGTGAAGTGCATGAAGACTTGTCAAATATTACTTGGTGTGGTCTCACCTGGTGGAGCGTGTCTGGCTTGGTTGTATAGGCAGCTATGCAAAGCATCGAAGCGAGATGTTTGTGAAATTATTGGTCCTTTAATACTTATTCGAATATAGGCTTGGGAAGATTTTCCACAATGGCTCCACAACTTCGACATGTCAACGATCATTTACCACTTGAATGAGTACACGGTTCATGGTATGTTATTTCATTTTAATTTAGATCAACAATAGTTTTTATGCTAATTGAGCAATATAATTAATTCAAAATCTAAAATATTAGTTTATTAATGCAGATGGAGAGACCAATTTTATGTAACTAGATTAGCTACTCATGTAGTTAGTAAGTATAGGTACATGTTGGACCTTCTTTAGCCTGATCAGGTATATAAATATACTGAAACTTGATTTCTTTATACTAAAATATTTATTTATTTACTCATAATGTAATATGTGATGTTTAGACTATTTGGGAGCCTTACAAATATGTAATGGACAATTTGCCCAATTTTTGTATGAACGGTCAAGACATATAGCGAACCATAAGTCCTCTCATATGTTTTCATATTGGGGAGTGGCATTACCCTAATAGGGTGATCAGATAGTTCATTTTTAAACAAGATATCCCATCATAATGAAATATTGAGTCACTCTTGCACAACATTGACTTGAGAAATACGGATTGGTCAGACAAGGTTGCACATTTGGTAGTGCGATGACAATCTCGTAGAAGATTTATTGCGATTGGAGCTTCGATTCAGCAGTTCCATAGGGACATAACTCAAGAATACATCAATTGGTATAATAATATTACAAGGCTCTACATCACTCGACCAGGAGCAGTTCTGGGTCATCTAGTACATATTTAAATATTGTATAATTACTTTAAATTATATACTAAATTAAATATTTCCTTTTTTTTTTTGCAATTCACAGAGATCAAACAACAATAGTCTTCGTGATGTTGCAGATGATCCACAACAAGTTCTTGATATATACGATGTACCTATTGTACCTCCACAACAATGGTAAATATGTACGATGTACCTATTGTACCTCTACCAGTTCATGGGGACATGCTCGAGTGGAAGAAGTTGACATCTACAAGGTTTACCATAATGTAGAAGAAGTGCCTCCTATGACACAAACACAGACACGGATTGGTTATGGTAGTCCGATGAAGATGATGCCAGCATTTGGTCCAAGGTATTATGATTCAGGGGCCGGTACAGGCTATTTTGATTCAAGAGTCAGTCTATCTTCTTCATACATGGATGTTGGTCCATCAACTTCATACATGCATGGACACAAACAGGACCTAAAGAATATAACAAATATATGTACTCCGAAGCATATGCAAAGGTATCAGATCCATAAGGGTGTCAACAAGAACCAAATAATCAAGAGGAGCCAAAGCGACATAGAGTTCAAAGTCGACGATGACAACTAA

mRNA sequence

ATGGAGAGCATGTTATCAGTGAAGTGCATGAAGACTTGTCAAATATTACTTGGTGTGGTCTCACCTGGTGGAGCGTGTCTGGCTTGGTTGTATAGGCAGCTATGCAAAGCATCGAAGCGAGATGCTTGGGAAGATTTTCCACAATGGCTCCACAACTTCGACATGTCAACGATCATTTACCACTTGAATGAGTACACGGTTCATGGCTCTACATCACTCGACCAGGAGCAGTTCTGGAGATCAAACAACAATAGTCTTCGTGATGTTGCAGATGATCCACAACAAGTTCTTGATATATACGATGTACCTATTGTACCTCCACAACAATGTTCATGGGGACATGCTCGAGTGGAAGAAGTTGACATCTACAAGGTTTACCATAATGTAGAAGAAGTGCCTCCTATGACACAAACACAGACACGGATTGGTTATGGTAGTCCGATGAAGATGATGCCAGCATTTGGTCCAAGGTATTATGATTCAGGGGCCGGTACAGGCTATTTTGATTCAAGAGTCAGTCTATCTTCTTCATACATGGATGTTGGTCCATCAACTTCATACATGCATGGACACAAACAGGACCTAAAGAATATAACAAATATATGTACTCCGAAGCATATGCAAAGGTATCAGATCCATAAGGGTGTCAACAAGAACCAAATAATCAAGAGGAGCCAAAGCGACATAGAGTTCAAAGTCGACGATGACAACTAA

Coding sequence (CDS)

ATGGAGAGCATGTTATCAGTGAAGTGCATGAAGACTTGTCAAATATTACTTGGTGTGGTCTCACCTGGTGGAGCGTGTCTGGCTTGGTTGTATAGGCAGCTATGCAAAGCATCGAAGCGAGATGCTTGGGAAGATTTTCCACAATGGCTCCACAACTTCGACATGTCAACGATCATTTACCACTTGAATGAGTACACGGTTCATGGCTCTACATCACTCGACCAGGAGCAGTTCTGGAGATCAAACAACAATAGTCTTCGTGATGTTGCAGATGATCCACAACAAGTTCTTGATATATACGATGTACCTATTGTACCTCCACAACAATGTTCATGGGGACATGCTCGAGTGGAAGAAGTTGACATCTACAAGGTTTACCATAATGTAGAAGAAGTGCCTCCTATGACACAAACACAGACACGGATTGGTTATGGTAGTCCGATGAAGATGATGCCAGCATTTGGTCCAAGGTATTATGATTCAGGGGCCGGTACAGGCTATTTTGATTCAAGAGTCAGTCTATCTTCTTCATACATGGATGTTGGTCCATCAACTTCATACATGCATGGACACAAACAGGACCTAAAGAATATAACAAATATATGTACTCCGAAGCATATGCAAAGGTATCAGATCCATAAGGGTGTCAACAAGAACCAAATAATCAAGAGGAGCCAAAGCGACATAGAGTTCAAAGTCGACGATGACAACTAA

Protein sequence

MESMLSVKCMKTCQILLGVVSPGGACLAWLYRQLCKASKRDAWEDFPQWLHNFDMSTIIYHLNEYTVHGSTSLDQEQFWRSNNNSLRDVADDPQQVLDIYDVPIVPPQQCSWGHARVEEVDIYKVYHNVEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPSTSYMHGHKQDLKNITNICTPKHMQRYQIHKGVNKNQIIKRSQSDIEFKVDDDN
Homology
BLAST of PI0000327 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 9.4e-45
Identity = 116/280 (41.43%), Postives = 145/280 (51.79%), Query Frame = 0

Query: 18  GVVSPGGACLAWLYRQLCKASKRD--------------AWEDFPQWLHNFDMSTIIYHLN 77
           G  S GG CLAWLY+QLCKASKRD              AWE FP       ++  + H N
Sbjct: 122 GRYSWGGVCLAWLYKQLCKASKRDVRDIDGPLILLQIWAWERFP------TIAPQLTHAN 181

Query: 78  EYTVHGSTSLDQEQFW--------RSNNNSLRDVADDPQQVLDIYDVPI----------- 137
            + + G     ++QF          S    + D+    Q + + Y   I           
Sbjct: 182 NHLLPGRALGSRDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKDVIDNLPNFYWSDR 241

Query: 138 ---------------------------VPPQQCSWGHARVEEVDIYKVYHNVEEVPPMTQ 197
                                      V  +   WG  RVEE ++ +VYHNVEEVPP TQ
Sbjct: 242 VAHLVVRWQSRRRFMAIGVSIQQFDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQ 301

Query: 198 TQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPSTSYMHGHKQDLKN 238
           TQ++ GYGSPM MMP FG  Y DS  GTGY+D+ +S  SSYMDVGPS SYMHGH + L N
Sbjct: 302 TQSQTGYGSPMTMMPTFGAGYCDSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGN 361

BLAST of PI0000327 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = 0

Query: 80  RSNNNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIYKV 139
           RSNN  LRDVADDPQQVL+I              YD+ IVPP     G  RVEE ++ +V
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPP-PVHRGRVRVEEAELDEV 208

Query: 140 YHNVEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPST 194
           YHNVEEVPP TQTQ++ GYGSPM MMP FG  YYDS  GTGY+D+ +S SS YMDVGPS 
Sbjct: 209 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSN 268

BLAST of PI0000327 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = 0

Query: 80  RSNNNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIYKV 139
           RSNN  LRDVADDPQQVL+I              YD+ IVPP     G  RVEE ++ +V
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPP-PVHRGRVRVEEAELDEV 199

Query: 140 YHNVEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPST 194
           YHNVEEVPP TQTQ++ GYGSPM MMP FG  YYDS  GTGY+D+ +S SS YMDVGPS 
Sbjct: 200 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSN 259

BLAST of PI0000327 vs. ExPASy TrEMBL
Match: A0A5A7VEC1 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001470 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-32
Identity = 89/185 (48.11%), Postives = 109/185 (58.92%), Query Frame = 0

Query: 33  QLCKASKRDAWEDFPQWLHNFD------MSTIIYHLNEY----TVHGSTSLDQEQFWRSN 92
           Q+   S +D  ++ P +  N           I +H+ E+     V     L Q    RSN
Sbjct: 9   QIIWESYKDVIDNLPNFCKNGQDIWRTISPLICFHIGEWHHPDRVLRQFGLKQNIPSRSN 68

Query: 93  NNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIYKVYHN 152
           N  LRDVADDPQQVLDI              YD+PIV P     G  RVEE ++ +VYHN
Sbjct: 69  NARLRDVADDPQQVLDICNNNERYMEEIHNMYDLPIV-PLPIHRGRIRVEEAELDEVYHN 128

Query: 153 VEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPSTSYM 194
           VEEVPP T+TQ++ GYGS M MMP FG RY DS  G GY+D+ V LSSSYMDVGPSTSYM
Sbjct: 129 VEEVPPTTKTQSQTGYGSLMTMMPTFGARYCDSEVGRGYYDAGVDLSSSYMDVGPSTSYM 188

BLAST of PI0000327 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-30
Identity = 76/130 (58.46%), Postives = 86/130 (66.15%), Query Frame = 0

Query: 78  FWRSNNNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIY 137
           FWRSNN  LRDVADD QQ LDI              YD+PIVPP     G  RVEE ++ 
Sbjct: 25  FWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPP-PVHRGCVRVEEAELD 84

Query: 138 KVYHNVEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGP 194
           KVYHNVEEVP  TQTQ++ GYGSPM MMP F   Y D   G GY+D+ V  SSSY+DV P
Sbjct: 85  KVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSP 144

BLAST of PI0000327 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-44
Identity = 116/280 (41.43%), Postives = 145/280 (51.79%), Query Frame = 0

Query: 18  GVVSPGGACLAWLYRQLCKASKRD--------------AWEDFPQWLHNFDMSTIIYHLN 77
           G  S GG CLAWLY+QLCKASKRD              AWE FP       ++  + H N
Sbjct: 122 GRYSWGGVCLAWLYKQLCKASKRDVRDIDGPLILLQIWAWERFP------TIAPQLTHAN 181

Query: 78  EYTVHGSTSLDQEQFW--------RSNNNSLRDVADDPQQVLDIYDVPI----------- 137
            + + G     ++QF          S    + D+    Q + + Y   I           
Sbjct: 182 NHLLPGRALGSRDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKDVIDNLPNFYWSDR 241

Query: 138 ---------------------------VPPQQCSWGHARVEEVDIYKVYHNVEEVPPMTQ 197
                                      V  +   WG  RVEE ++ +VYHNVEEVPP TQ
Sbjct: 242 VAHLVVRWQSRRRFMAIGVSIQQFDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQ 301

Query: 198 TQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPSTSYMHGHKQDLKN 238
           TQ++ GYGSPM MMP FG  Y DS  GTGY+D+ +S  SSYMDVGPS SYMHGH + L N
Sbjct: 302 TQSQTGYGSPMTMMPTFGAGYCDSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGN 361

BLAST of PI0000327 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-32
Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = 0

Query: 80  RSNNNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIYKV 139
           RSNN  LRDVADDPQQVL+I              YD+ IVPP     G  RVEE ++ +V
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPP-PVHRGRVRVEEAELDEV 208

Query: 140 YHNVEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPST 194
           YHNVEEVPP TQTQ++ GYGSPM MMP FG  YYDS  GTGY+D+ +S SS YMDVGPS 
Sbjct: 209 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSN 268

BLAST of PI0000327 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-32
Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = 0

Query: 80  RSNNNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIYKV 139
           RSNN  LRDVADDPQQVL+I              YD+ IVPP     G  RVEE ++ +V
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPP-PVHRGRVRVEEAELDEV 199

Query: 140 YHNVEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPST 194
           YHNVEEVPP TQTQ++ GYGSPM MMP FG  YYDS  GTGY+D+ +S SS YMDVGPS 
Sbjct: 200 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSN 259

BLAST of PI0000327 vs. NCBI nr
Match: KAA0064245.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK18615.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-31
Identity = 89/185 (48.11%), Postives = 109/185 (58.92%), Query Frame = 0

Query: 33  QLCKASKRDAWEDFPQWLHNFD------MSTIIYHLNEY----TVHGSTSLDQEQFWRSN 92
           Q+   S +D  ++ P +  N           I +H+ E+     V     L Q    RSN
Sbjct: 9   QIIWESYKDVIDNLPNFCKNGQDIWRTISPLICFHIGEWHHPDRVLRQFGLKQNIPSRSN 68

Query: 93  NNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIYKVYHN 152
           N  LRDVADDPQQVLDI              YD+PIV P     G  RVEE ++ +VYHN
Sbjct: 69  NARLRDVADDPQQVLDICNNNERYMEEIHNMYDLPIV-PLPIHRGRIRVEEAELDEVYHN 128

Query: 153 VEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGPSTSYM 194
           VEEVPP T+TQ++ GYGS M MMP FG RY DS  G GY+D+ V LSSSYMDVGPSTSYM
Sbjct: 129 VEEVPPTTKTQSQTGYGSLMTMMPTFGARYCDSEVGRGYYDAGVDLSSSYMDVGPSTSYM 188

BLAST of PI0000327 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 7.9e-30
Identity = 76/130 (58.46%), Postives = 86/130 (66.15%), Query Frame = 0

Query: 78  FWRSNNNSLRDVADDPQQVLDI--------------YDVPIVPPQQCSWGHARVEEVDIY 137
           FWRSNN  LRDVADD QQ LDI              YD+PIVPP     G  RVEE ++ 
Sbjct: 25  FWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPP-PVHRGCVRVEEAELD 84

Query: 138 KVYHNVEEVPPMTQTQTRIGYGSPMKMMPAFGPRYYDSGAGTGYFDSRVSLSSSYMDVGP 194
           KVYHNVEEVP  TQTQ++ GYGSPM MMP F   Y D   G GY+D+ V  SSSY+DV P
Sbjct: 85  KVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSP 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TDY59.4e-4541.43Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7TBF81.8e-3260.94Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH231.8e-3260.94Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7VEC15.3e-3248.11GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3BSG83.8e-3058.46GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
KAA0041168.11.9e-4441.43serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0038951.13.8e-3260.94mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.13.8e-3260.94mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0064245.11.1e-3148.11GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK01176.17.9e-3058.46GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000327.1PI0000327.1mRNA