PI0000088 (gene) Melon (PI 482460) v1

Overview
NamePI0000088
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionStress response protein NST1-like
Locationchr11: 12424799 .. 12425194 (-)
RNA-Seq ExpressionPI0000088
SyntenyPI0000088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGCTCAAGACCGCCATCCAGAAAAAAGAAAAGAACAAAGAGTTGTTTGTCCAATTAGACAAGCAGGTTACGGAGCTCCCAGACAAATGCAAGGCACTGGGAGGAGAGAAAGATCACCTTGAAGCCTTGACGGAGGAATTCGAGGAAGAGTTGGATGCAATAAACCCAATTAAACAAGGGCCATCGCCAAAAAGGAAAAAAGGGGCCGCCAGGCCATCCAAGACAAAGAAGAAAATGGGGGCATTCAGACTTGAGGAGCCCCAACTCGGTGGTGGTGAGACGAAAAAGAAAGAGTCCAACATCAACACGATTATAAAAATAGAGAAGGGGCTCTTTCCTTTCAACGAACCCCTACTAGATTTCATCTATGCGCCAATTCAGGCGTTTTGA

mRNA sequence

ATGGCGACGCTCAAGACCGCCATCCAGAAAAAAGAAAAGAACAAAGAGTTGTTTGTCCAATTAGACAAGCAGGTTACGGAGCTCCCAGACAAATGCAAGGCACTGGGAGGAGAGAAAGATCACCTTGAAGCCTTGACGGAGGAATTCGAGGAAGAGTTGGATGCAATAAACCCAATTAAACAAGGGCCATCGCCAAAAAGGAAAAAAGGGGCCGCCAGGCCATCCAAGACAAAGAAGAAAATGGGGGCATTCAGACTTGAGGAGCCCCAACTCGGTGGTGGTGAGACGAAAAAGAAAGAGTCCAACATCAACACGATTATAAAAATAGAGAAGGGGCTCTTTCCTTTCAACGAACCCCTACTAGATTTCATCTATGCGCCAATTCAGGCGTTTTGA

Coding sequence (CDS)

ATGGCGACGCTCAAGACCGCCATCCAGAAAAAAGAAAAGAACAAAGAGTTGTTTGTCCAATTAGACAAGCAGGTTACGGAGCTCCCAGACAAATGCAAGGCACTGGGAGGAGAGAAAGATCACCTTGAAGCCTTGACGGAGGAATTCGAGGAAGAGTTGGATGCAATAAACCCAATTAAACAAGGGCCATCGCCAAAAAGGAAAAAAGGGGCCGCCAGGCCATCCAAGACAAAGAAGAAAATGGGGGCATTCAGACTTGAGGAGCCCCAACTCGGTGGTGGTGAGACGAAAAAGAAAGAGTCCAACATCAACACGATTATAAAAATAGAGAAGGGGCTCTTTCCTTTCAACGAACCCCTACTAGATTTCATCTATGCGCCAATTCAGGCGTTTTGA

Protein sequence

MATLKTAIQKKEKNKELFVQLDKQVTELPDKCKALGGEKDHLEALTEEFEEELDAINPIKQGPSPKRKKGAARPSKTKKKMGAFRLEEPQLGGGETKKKESNINTIIKIEKGLFPFNEPLLDFIYAPIQAF
Homology
[Close]
BLAST of PI0000088 vs. ExPASy TrEMBL
Match: A0A5A7TBU7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold279G00120 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.7e-08
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 0 

Query: 11  KEKNKELFVQLDKQVTELPDKCK-ALGGEKDHLEALTEEFEEELDAINPIKQGPSPKRKK 70
           K+K +E    L +QV  +  + K A   E D ++ + EEF  E++ ++P+   P P+ K 
Sbjct: 163 KKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKG 222

Query: 71  ----GAARPSKTKKKMGAFRLEEPQLGGGETKKKESNINTIIKIEKGLFPFNEPLLDFIY 130
                  + SK+K+K G  R ++ Q G    K     ++ +IKIEKGL PFN+PLL+F+Y
Sbjct: 223 LTNIEFPKKSKSKRKAGTSRPKDIQRG---NKMSAQKLDKLIKIEKGLLPFNDPLLNFLY 282

[Close]
BLAST of PI0000088 vs. ExPASy TrEMBL
Match: A0A5D3DQE7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00740 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.7e-08
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 0 

Query: 11  KEKNKELFVQLDKQVTELPDKCK-ALGGEKDHLEALTEEFEEELDAINPIKQGPSPKRKK 70
           K+K +E    L +QV  +  + K A   E D ++ + EEF  E++ ++P+   P P+ K 
Sbjct: 132 KKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKG 191

Query: 71  ----GAARPSKTKKKMGAFRLEEPQLGGGETKKKESNINTIIKIEKGLFPFNEPLLDFIY 130
                  + SK+K+K G  R ++ Q G    K     ++ +IKIEKGL PFN+PLL+F+Y
Sbjct: 192 LTNIEFPKKSKSKRKAGTSRPKDIQRG---NKMSAQKLDKLIKIEKGLLPFNDPLLNFLY 251

[Close]
BLAST of PI0000088 vs. NCBI nr
Match: TYK25768.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 0 

Query: 11  KEKNKELFVQLDKQVTELPDKCK-ALGGEKDHLEALTEEFEEELDAINPIKQGPSPKRKK 70
           K+K +E    L +QV  +  + K A   E D ++ + EEF  E++ ++P+   P P+ K 
Sbjct: 132 KKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKG 191

Query: 71  ----GAARPSKTKKKMGAFRLEEPQLGGGETKKKESNINTIIKIEKGLFPFNEPLLDFIY 130
                  + SK+K+K G  R ++ Q G    K     ++ +IKIEKGL PFN+PLL+F+Y
Sbjct: 192 LTNIEFPKKSKSKRKAGTSRPKDIQRG---NKMSAQKLDKLIKIEKGLLPFNDPLLNFLY 251

[Close]
BLAST of PI0000088 vs. NCBI nr
Match: KAA0038829.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 0 

Query: 11  KEKNKELFVQLDKQVTELPDKCK-ALGGEKDHLEALTEEFEEELDAINPIKQGPSPKRKK 70
           K+K +E    L +QV  +  + K A   E D ++ + EEF  E++ ++P+   P P+ K 
Sbjct: 163 KKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKG 222

Query: 71  ----GAARPSKTKKKMGAFRLEEPQLGGGETKKKESNINTIIKIEKGLFPFNEPLLDFIY 130
                  + SK+K+K G  R ++ Q G    K     ++ +IKIEKGL PFN+PLL+F+Y
Sbjct: 223 LTNIEFPKKSKSKRKAGTSRPKDIQRG---NKMSAQKLDKLIKIEKGLLPFNDPLLNFLY 282

The following BLAST results are available for this feature:
BLAST of PI0000088 vs.
Match NameE-valueIdentityDescription
BLAST of PI0000088 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TBU78.7e-0834.68Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DQE78.7e-0834.68Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of PI0000088 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK25768.11.8e-0734.68stress response protein NST1-like [Cucumis melo var. makuwa][more]
KAA0038829.11.8e-0734.68stress response protein NST1-like [Cucumis melo var. makuwa][more]
BLAST of PI0000088 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000088.1PI0000088.1mRNA