Moctig00543g010 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moctig00543g010
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Protein root UVB sensitive 1, chloroplastic
Location	tig00000543_pilon: 839 .. 1956 (-)
RNA-Seq Expression	Moctig00543g010
Synteny	Moctig00543g010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCGGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCAAGGTGCCCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAGGGCGAAGAAGGCCCCCTTCCGGGGGGCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAG

mRNA sequence

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCGGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCCTTAGGTGGAGGGCGAAGAAGGCCCCCTTCCGGGGGGCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAG

Coding sequence (CDS)

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCGGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCCTTAGGTGGAGGGCGAAGAAGGCCCCCTTCCGGGGGGCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAG

Protein sequence

MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGSSARVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRPGRLFTKNTGLRKVLRWRAKKAPFRGAEPSVRYHSGRARILTLCQDLRAKGQSQVDSFYGA

Homology

[Close]

BLAST of Moctig00543g010 vs. NCBI nr
Match: KAG9438714.1 (hypothetical protein H6P81_021346 [Aristolochia fimbriata])

HSP 1 Score: 251.5 bits (641), Expect = 5.2e-63
Identity = 142/171 (83.04%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 1   MNGAKRSAEAVGC-KNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKG 60
           MNGAKRSAEAVGC KNASVGERSALE STRAS  GRSGSENVGLSNANIGENPMPRKPKG
Sbjct: 1   MNGAKRSAEAVGCKKNASVGERSALEESTRASRCGRSGSENVGLSNANIGENPMPRKPKG 60

Query: 61  SSARVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRPGRLFTK 120
           SSARVRRGREN SSQC STRRYGAEVTHAILPGKARTTFNKRVPVPETDT      L   
Sbjct: 61  SSARVRRGRENASSQCPSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTERPYEALLFP 120

Query: 121 NTGLRKV---LRWRAKKAPFRGAEPSVRYHSGRARILTLCQDLRAKGQSQV 168
             G       LRW+AKKA   G+EPSVRYHSGRARILTLCQDLRAKGQSQV
Sbjct: 121 GIGFGPFPAQLRWKAKKASLGGSEPSVRYHSGRARILTLCQDLRAKGQSQV 171

[Close]

BLAST of Moctig00543g010 vs. NCBI nr
Match: KAF1876778.1 (hypothetical protein Lal_00043708 [Lupinus albus])

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-55
Identity = 139/206 (67.48%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGCKN SVGERSALEG TRAS GGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 50  MNGAKRSAEAVGCKNLSVGERSALEGRTRASSGGRSGSENVGLSNANVGENPMPRKPKGS 109

Query: 61  SAR-----VRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRP-- 120
           SAR     VRRGREN SSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDT   P  
Sbjct: 110 SARFVHGGVRRGRENASSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGVPPHK 169

Query: 121 -GR-------LFTK-------------------NTGLRKVLRWRA------KKAPFRGAE 167
            GR       ++ K                   N    KV ++        ++ P  G E
Sbjct: 170 GGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKVAKFLVGLGGGRRRPPSGGLE 229

[Close]

BLAST of Moctig00543g010 vs. NCBI nr
Match: PHT42292.1 (hypothetical protein CQW23_16317 [Capsicum baccatum])

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-53
Identity = 128/170 (75.29%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNG KRSAEA+GCKN SVGERSALE S  ASGGGRS S+NV LSN NIGENPMPRKPKGS
Sbjct: 1   MNGDKRSAEAMGCKNTSVGERSALEESLHASGGGRSRSKNVDLSNTNIGENPMPRKPKGS 60

Query: 61  SARVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRPGRLFTKN 120
           SARVRRGREN SSQCS+TRRYGAEVTHAILPGKARTT +KRVPVPETDT   P      N
Sbjct: 61  SARVRRGRENASSQCSNTRRYGAEVTHAILPGKARTTLSKRVPVPETDT-GEPATEAPVN 120

Query: 121 TGLR---KVLRWRAKKAPFRGAEPSVRYHSGRARILTLCQDLRAKGQSQV 168
            G       +       P  G EPSVRYHSGRARILTLCQDLRAKGQSQV
Sbjct: 121 GGRNYNGPKVEGEEGLLP-EGPEPSVRYHSGRARILTLCQDLRAKGQSQV 168

[Close]

BLAST of Moctig00543g010 vs. NCBI nr
Match: PPD93814.1 (hypothetical protein GOBAR_DD09165 [Gossypium barbadense])

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-49
Identity = 130/208 (62.50%), Postives = 136/208 (65.38%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGCKNASVGERSAL GSTR SG  RSGSENV  SNANIGEN MPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCKNASVGERSALGGSTRVSGSRRSGSENVSFSNANIGENLMPRKPKGS 60

Query: 61  SAR-----VRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDT------ 120
           SAR     VRRGREN  SQCSST+RYGAEVTHAILP KART FNKRVPVPETDT      
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTKRYGAEVTHAILPRKARTNFNKRVPVPETDTGEGVPP 120

Query: 121 -------------------------VTRPGRLFTKNTGLRKVLRW------RAKKAPFRG 167
                                     T       +N    KV ++      R ++ P  G
Sbjct: 121 HKRGRSDQARAAVYQKHRSPQSWEPTTEAPVNGGRNYNDPKVAKFLVGLSGRRRRPPSGG 180

[Close]

BLAST of Moctig00543g010 vs. NCBI nr
Match: CAD5336140.1 (unnamed protein product [Arabidopsis thaliana] >CAD5336144.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-47
Identity = 114/133 (85.71%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RASGGGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 300 MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 359

Query: 61  SAR-----VRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRPGR 120
           SAR     VRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR        VTRPGR
Sbjct: 360 SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKR-----GVAVTRPGR 419

Query: 121 LFTKNTGLRKVLR 129
           LFTKNTGLRKV+R
Sbjct: 420 LFTKNTGLRKVVR 427

[Close]

BLAST of Moctig00543g010 vs. ExPASy TrEMBL
Match: A0A6A5MXD5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043708 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.1e-56
Identity = 139/206 (67.48%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGCKN SVGERSALEG TRAS GGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 50  MNGAKRSAEAVGCKNLSVGERSALEGRTRASSGGRSGSENVGLSNANVGENPMPRKPKGS 109

Query: 61  SAR-----VRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRP-- 120
           SAR     VRRGREN SSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDT   P  
Sbjct: 110 SARFVHGGVRRGRENASSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGVPPHK 169

Query: 121 -GR-------LFTK-------------------NTGLRKVLRWRA------KKAPFRGAE 167
            GR       ++ K                   N    KV ++        ++ P  G E
Sbjct: 170 GGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKVAKFLVGLGGGRRRPPSGGLE 229

[Close]

BLAST of Moctig00543g010 vs. ExPASy TrEMBL
Match: A0A2G2WAQ9 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_16317 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.2e-54
Identity = 128/170 (75.29%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNG KRSAEA+GCKN SVGERSALE S  ASGGGRS S+NV LSN NIGENPMPRKPKGS
Sbjct: 1   MNGDKRSAEAMGCKNTSVGERSALEESLHASGGGRSRSKNVDLSNTNIGENPMPRKPKGS 60

Query: 61  SARVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRPGRLFTKN 120
           SARVRRGREN SSQCS+TRRYGAEVTHAILPGKARTT +KRVPVPETDT   P      N
Sbjct: 61  SARVRRGRENASSQCSNTRRYGAEVTHAILPGKARTTLSKRVPVPETDT-GEPATEAPVN 120

Query: 121 TGLR---KVLRWRAKKAPFRGAEPSVRYHSGRARILTLCQDLRAKGQSQV 168
            G       +       P  G EPSVRYHSGRARILTLCQDLRAKGQSQV
Sbjct: 121 GGRNYNGPKVEGEEGLLP-EGPEPSVRYHSGRARILTLCQDLRAKGQSQV 168

[Close]

BLAST of Moctig00543g010 vs. ExPASy TrEMBL
Match: A0A6N2NAY5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.9e-52
Identity = 140/251 (55.78%), Postives = 145/251 (57.77%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGCKNAS        GSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 62  MNGAKRSAEAVGCKNAS--------GSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 121

Query: 61  SAR-----VRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETD---TVTR 120
           SAR     VRRGREN SSQC STRRYGAEVTHAILPGKARTTFNK    P+      VTR
Sbjct: 122 SARFVHGGVRRGRENASSQCPSTRRYGAEVTHAILPGKARTTFNKGYLYPKPTQGVAVTR 181

Query: 121 PGRLFTKNTGLRKVLR-------------------------------------------- 167
           PGRLFTKNTGLRKV+R                                            
Sbjct: 182 PGRLFTKNTGLRKVVRPCMGADACPVPEGEPATEAPVNGGRNYNGPKVAKFLVGLGEIDM 241

[Close]

BLAST of Moctig00543g010 vs. ExPASy TrEMBL
Match: A0A7G2FKR6 (Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS23352 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.1e-48
Identity = 114/133 (85.71%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RASGGGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 300 MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 359

Query: 61  SAR-----VRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRPGR 120
           SAR     VRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR        VTRPGR
Sbjct: 360 SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKR-----GVAVTRPGR 419

Query: 121 LFTKNTGLRKVLR 129
           LFTKNTGLRKV+R
Sbjct: 420 LFTKNTGLRKVVR 427

[Close]

BLAST of Moctig00543g010 vs. ExPASy TrEMBL
Match: A0A2P5VSX7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38767 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.5e-47
Identity = 124/195 (63.59%), Postives = 132/195 (67.69%), Query Frame = 0


Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAK+ AEAVGCKN SVGERS L GSTR SG  RS SENVGLSNANIGENPMPRK  GS
Sbjct: 1   MNGAKKLAEAVGCKNVSVGERSILGGSTRVSGSRRSESENVGLSNANIGENPMPRKTMGS 60

Query: 61  SAR-----VRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTVTRP-- 120
           S R     V +GR+   SQCSSTR Y  EVTHAI  GKA+TTFNKRVPVPET T      
Sbjct: 61  STRFIHRGVGKGRKYAPSQCSSTRHYDVEVTHAIFLGKAQTTFNKRVPVPETYTGGNVKE 120

Query: 121 ------GRLFTK--------NTGLRKVLRWRAKKAPFRGA-EPSVRYHSGRARILTLCQD 174
                 G+L TK          G    +  + K+  F G  EPSVRYHSGRARILTLCQD
Sbjct: 121 VGDLMIGKLVTKALVNDDHNYNGPTITITVKGKEGLFLGGLEPSVRYHSGRARILTLCQD 180

The following BLAST results are available for this feature:

BLAST of Moctig00543g010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG9438714.1	5.2e-63	83.04	hypothetical protein H6P81_021346 [Aristolochia fimbriata]	[more]
KAF1876778.1	1.0e-55	67.48	hypothetical protein Lal_00043708 [Lupinus albus]	[more]
PHT42292.1	1.3e-53	75.29	hypothetical protein CQW23_16317 [Capsicum baccatum]	[more]
PPD93814.1	1.5e-49	62.50	hypothetical protein GOBAR_DD09165 [Gossypium barbadense]	[more]
CAD5336140.1	1.0e-47	85.71	unnamed protein product [Arabidopsis thaliana] >CAD5336144.1 unnamed protein pro...	[more]

BLAST of Moctig00543g010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moctig00543g010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5MXD5	5.1e-56	67.48	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043708 PE=4 SV=1	[more]
A0A2G2WAQ9	6.2e-54	75.29	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_16317 PE=4 SV=1	[more]
A0A6N2NAY5	9.9e-52	55.78	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=...	[more]
A0A7G2FKR6	5.1e-48	85.71	Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS233...	[more]
A0A2P5VSX7	1.5e-47	63.59	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38767 PE=4 SV...	[more]

BLAST of Moctig00543g010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moctig00543g010.1	Moctig00543g010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009528	plastid inner membrane
molecular_function	GO:0005488	binding