Moc11g31800 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g31800
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 23211178 .. 23212155 (-)
RNA-Seq ExpressionMoc11g31800
SyntenyMoc11g31800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAATCCATTGAAGCCCAGTCAGAAGTCACCATGAATGCTGCTGCACAGACCATAAATCGAGGTAACATTGCTGCATTAGAAGGTCATGGATTGGAAGACTACATTGATGAAGAGTCTGAAATTCCGTCAAGCAACCTATTGATCATAGAAAACTCAGTATCAACACAAAGAGTGAATCCAACATACATAAAATGGAAGAAACAAGATCGTCTAATAATGTCATGGTTATTGGGATCGATGAGCGAAGAGATTCTTGCAGACCTTCTGGATTGCAAAACGACAAAAGAAATATGGAATAGTCTTGAACAGATATTTTCAAGCAGAAATCTTGCGAAAGTGATGGAACTAAGGACAAAATTACATAACATTCGTAAAGGAGATCTCAGTCTTAAGGACTACATGCGCCAAATCAAGAATCTAATTGATTCTTTAAAAGCCGTTGGTAAAACAATCACTACAGAGGATCATATTCTACATATTTTGTCAGGTTTAGGCTCAGAATACGAGTCCACAATCTCTGTTATCACTGCCAAAATAGGATCCGTCTCAATTCAAGAAGTCACTTCTTTACTACTGTCTCGTGAAAGTAGAATGGAGAAAGATTTAACAGCAACAAACACAAAAGATTCATCATTTCCATATGTTAATCTTGCTCAACATCAACATTCACAGCAATATTCAGCACGACACAATAATGATAGTCACAGAAATCACAATACACAACAATATGATAACAGAGGACATTTTGATAATAATCGTGGCAGAGGTAGAAATGAGAGAGGAAGAGGCCGACCATGGTATCCAAAACCTAGAGTTCAGTGCCAAATTTGTCACAAATTTGGACATACGGCAGATAAATGTTACTTCAGAGTCCCAACTGGTCCTAATTCAGGCATGAATTACAATGGTAGACAATACACACAACAATCGACTAATACATTTCCACAACAGAATAATATGGCAGCAATGTAA

mRNA sequence

ATGACAGAATCCATTGAAGCCCAGTCAGAAGTCACCATGAATGCTGCTGCACAGACCATAAATCGAGGTAACATTGCTGCATTAGAAGGTCATGGATTGGAAGACTACATTGATGAAGAGTCTGAAATTCCGTCAAGCAACCTATTGATCATAGAAAACTCAGTATCAACACAAAGAGTGAATCCAACATACATAAAATGGAAGAAACAAGATCGTCTAATAATGTCATGGTTATTGGGATCGATGAGCGAAGAGATTCTTGCAGACCTTCTGGATTGCAAAACGACAAAAGAAATATGGAATAGTCTTGAACAGATATTTTCAAGCAGAAATCTTGCGAAAGTGATGGAACTAAGGACAAAATTACATAACATTCGTAAAGGAGATCTCAGTCTTAAGGACTACATGCGCCAAATCAAGAATCTAATTGATTCTTTAAAAGCCGTTGGTAAAACAATCACTACAGAGGATCATATTCTACATATTTTGTCAGGTTTAGGCTCAGAATACGAGTCCACAATCTCTGTTATCACTGCCAAAATAGGATCCGTCTCAATTCAAGAAGTCACTTCTTTACTACTGTCTCGTGAAAGTAGAATGGAGAAAGATTTAACAGCAACAAACACAAAAGATTCATCATTTCCATATGTTAATCTTGCTCAACATCAACATTCACAGCAATATTCAGCACGACACAATAATGATAGTCACAGAAATCACAATACACAACAATATGATAACAGAGGACATTTTGATAATAATCGTGGCAGAGGTAGAAATGAGAGAGGAAGAGGCCGACCATGGTATCCAAAACCTAGAGTTCAGTGCCAAATTTGTCACAAATTTGGACATACGGCAGATAAATGTTACTTCAGAGTCCCAACTGGTCCTAATTCAGGCATGAATTACAATGGTAGACAATACACACAACAATCGACTAATACATTTCCACAACAGAATAATATGGCAGCAATGTAA

Coding sequence (CDS)

ATGACAGAATCCATTGAAGCCCAGTCAGAAGTCACCATGAATGCTGCTGCACAGACCATAAATCGAGGTAACATTGCTGCATTAGAAGGTCATGGATTGGAAGACTACATTGATGAAGAGTCTGAAATTCCGTCAAGCAACCTATTGATCATAGAAAACTCAGTATCAACACAAAGAGTGAATCCAACATACATAAAATGGAAGAAACAAGATCGTCTAATAATGTCATGGTTATTGGGATCGATGAGCGAAGAGATTCTTGCAGACCTTCTGGATTGCAAAACGACAAAAGAAATATGGAATAGTCTTGAACAGATATTTTCAAGCAGAAATCTTGCGAAAGTGATGGAACTAAGGACAAAATTACATAACATTCGTAAAGGAGATCTCAGTCTTAAGGACTACATGCGCCAAATCAAGAATCTAATTGATTCTTTAAAAGCCGTTGGTAAAACAATCACTACAGAGGATCATATTCTACATATTTTGTCAGGTTTAGGCTCAGAATACGAGTCCACAATCTCTGTTATCACTGCCAAAATAGGATCCGTCTCAATTCAAGAAGTCACTTCTTTACTACTGTCTCGTGAAAGTAGAATGGAGAAAGATTTAACAGCAACAAACACAAAAGATTCATCATTTCCATATGTTAATCTTGCTCAACATCAACATTCACAGCAATATTCAGCACGACACAATAATGATAGTCACAGAAATCACAATACACAACAATATGATAACAGAGGACATTTTGATAATAATCGTGGCAGAGGTAGAAATGAGAGAGGAAGAGGCCGACCATGGTATCCAAAACCTAGAGTTCAGTGCCAAATTTGTCACAAATTTGGACATACGGCAGATAAATGTTACTTCAGAGTCCCAACTGGTCCTAATTCAGGCATGAATTACAATGGTAGACAATACACACAACAATCGACTAATACATTTCCACAACAGAATAATATGGCAGCAATGTAA

Protein sequence

MTESIEAQSEVTMNAAAQTINRGNIAALEGHGLEDYIDEESEIPSSNLLIIENSVSTQRVNPTYIKWKKQDRLIMSWLLGSMSEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNLIDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEKDLTATNTKDSSFPYVNLAQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGRNERGRGRPWYPKPRVQCQICHKFGHTADKCYFRVPTGPNSGMNYNGRQYTQQSTNTFPQQNNMAAM
Homology
BLAST of Moc11g31800 vs. NCBI nr
Match: XP_022158089.1 (uncharacterized protein LOC111024658 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 9.4e-58
Identity = 134/248 (54.03%), Postives = 182/248 (73.39%), Query Frame = 0

Query: 82  MSEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKN 141
           M+EEILADLL C T KEIW SL+Q+F+++NL KVM+L+T+L N+RKG LSLK+Y+RQIKN
Sbjct: 1   MAEEILADLLHCSTAKEIWVSLQQMFATQNLTKVMQLKTQLQNLRKGGLSLKEYIRQIKN 60

Query: 142 LIDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRME 201
           L+DSLKA GK++ TEDHI+HILSGLGSEYEST+SVIT K G ++IQ+VT+LLLS + R+E
Sbjct: 61  LVDSLKAAGKSMNTEDHIMHILSGLGSEYESTVSVITVKKGPLTIQDVTALLLSHQRRIE 120

Query: 202 KDLTATNTKDSSFP--YVNLAQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGR 261
           K+++A   KD + P   +NLA  Q  Q  + ++N+ S+ +++  +Y      DNNRGRGR
Sbjct: 121 KEISA--AKDVTLPSASINLAHQQFGQ--NNQNNSVSYNSNDNHRYQQHYSNDNNRGRGR 180

Query: 262 NERGRGRPWYPKPRVQCQICHKFGHTADKCYFRVPTGPNSGMNYNGRQYTQ--QSTNTFP 321
             R  GR W  + ++QCQICH+FGHTAD+ YFR     NS +    +  T+  QS++ + 
Sbjct: 181 FHRNGGRRWNSRNKIQCQICHRFGHTADRYYFR-----NSSVQQQNQYSTRYFQSSSPYH 239

Query: 322 QQNNMAAM 326
           QQ N AAM
Sbjct: 241 QQQNAAAM 239

BLAST of Moc11g31800 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-55
Identity = 135/306 (44.12%), Postives = 197/306 (64.38%), Query Frame = 0

Query: 25  IAALEGHGLEDYIDEESEIPSSNLLIIENS--VSTQRVNPTYIKWKKQDRLIMSWLLGSM 84
           + ALE + LE++++ ESE PS  L+  E+S   +T   NP Y  WK+QDRLI SWLLGSM
Sbjct: 47  LTALEAYDLENFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSM 106

Query: 85  SEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNL 144
           SEEIL  +L CK+ KEIW +L+ IFSSR LA+ M+ + KLHNI+KG + LK+Y  +I   
Sbjct: 107 SEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQC 166

Query: 145 IDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEK 204
           +D+L ++ K ++++DHIL+IL+GLGS+Y+S ISVI+A+  S S+QEV SLLL++ES+ E 
Sbjct: 167 VDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNES 226

Query: 205 DLTATNTKDSSFPYVNL---AQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGR 264
            L +    +++ P VN+      + ++ Y   + N+ H NH+  Q   RG+  +NRGR  
Sbjct: 227 KLIS----ETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRG 286

Query: 265 NERGRGRPWYPKPRVQCQICHKFGHTADKCYFR-VPTGPNSGMNYNGRQYTQQSTNTFPQ 324
           N   R +P       QCQIC K G++AD+C+FR  P   +SG + N    +  + N  PQ
Sbjct: 287 N---RNKP-------QCQICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQ 338

BLAST of Moc11g31800 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-55
Identity = 135/306 (44.12%), Postives = 197/306 (64.38%), Query Frame = 0

Query: 25  IAALEGHGLEDYIDEESEIPSSNLLIIENS--VSTQRVNPTYIKWKKQDRLIMSWLLGSM 84
           + ALE + LE++++ ESE PS  L+  E+S   +T   NP Y  WK+QDRLI SWLLGSM
Sbjct: 47  LTALEAYDLENFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSM 106

Query: 85  SEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNL 144
           SEEIL  +L CK+ KEIW +L+ IFSSR LA+ M+ + KLHNI+KG + LK+Y  +I   
Sbjct: 107 SEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQC 166

Query: 145 IDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEK 204
           +D+L ++ K ++++DHIL+IL+GLGS+Y+S ISVI+A+  S S+QEV SLLL++ES+ E 
Sbjct: 167 VDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNES 226

Query: 205 DLTATNTKDSSFPYVNL---AQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGR 264
            L +    +++ P VN+      + ++ Y   + N+ H NH+  Q   RG+  +NRGR  
Sbjct: 227 KLIS----ETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRG 286

Query: 265 NERGRGRPWYPKPRVQCQICHKFGHTADKCYFR-VPTGPNSGMNYNGRQYTQQSTNTFPQ 324
           N   R +P       QCQIC K G++AD+C+FR  P   +SG + N    +  + N  PQ
Sbjct: 287 N---RNKP-------QCQICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQ 338

BLAST of Moc11g31800 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-54
Identity = 132/281 (46.98%), Postives = 180/281 (64.06%), Query Frame = 0

Query: 27  ALEGHGLEDYIDEESEIPSSNLLII--ENSVSTQRVNPTYIKWKKQDRLIMSWLLGSMSE 86
           AL+G+GLE YID   + P+  +     E+S S+ + NP Y +W KQD+LI +WLLGSM+E
Sbjct: 48  ALQGNGLESYIDSNEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNE 107

Query: 87  EILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNLID 146
           +IL+ +LDCK+ +EIW  LE +F+SR LA+VM+L+ KL N +KG+LSLKDY  +IKNL+D
Sbjct: 108 DILSQMLDCKSAREIWTVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVD 167

Query: 147 SLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEKDL 206
           SL   GK ++TEDHI+HIL+GLG E+++ ISVITA+    ++QEV SLLL +E R E++L
Sbjct: 168 SLAIAGKKLSTEDHIMHILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNERNL 227

Query: 207 TATNTKDSSFPYVNLAQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGRNERGR 266
                 D S P VNL  +  S++ +  H +     H +  Y  RG   NNR   R     
Sbjct: 228 I---NSDGSLPSVNLTLNDSSKKNNL-HQSKCFNPHQS-NYSQRGRGTNNRSSNR----- 287

Query: 267 GRPWYPKPRVQCQICHKFGHTADKCYFRVP---TGPNSGMN 303
            R W    + QCQIC +FGHTA +CY R      GPN   N
Sbjct: 288 -RNWTGNNKPQCQICGRFGHTALRCYMRFERNFLGPNMNPN 317

BLAST of Moc11g31800 vs. NCBI nr
Match: KAA0046195.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 8.8e-48
Identity = 127/308 (41.23%), Postives = 188/308 (61.04%), Query Frame = 0

Query: 25  IAALEGHGLEDYIDEESE--------IPSSNLLIIENSVS--TQRVNPTYIKWKKQDRLI 84
           + ALE + LE Y D  +E         P+ + + +E+S +     +N  Y  WK+QDRLI
Sbjct: 15  LTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLI 74

Query: 85  MSWLLGSMSEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKD 144
            SWLLGSMSE+IL  +L   + K+IW +L+ I+SSR LAK M+ + KLHN++KG +SLK+
Sbjct: 75  SSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKE 134

Query: 145 YMRQIKNLIDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLL 204
           Y  +I+  +D+L ++ K I+T+DHIL+IL+GLG+EY+S IS+I+A+  S S+Q+  SLLL
Sbjct: 135 YFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLL 194

Query: 205 SRESRMEKDLTATNTKDSSFPYVNLAQHQHSQQYSARHNNDSHR---NHNTQQYDNRGHF 264
           ++ES++E  +T+    + S P VN+  H        + +  +HR   N+      N  + 
Sbjct: 195 TQESQIESKITS----EVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYH 254

Query: 265 DNNRGRGRNER-GRGRPWYPKPRVQCQICHKFGHTADKCYFR-VPTGPNSGMNYNGRQYT 318
             +R  GR+ R GRG     + + QCQIC KFGH AD+CYFR  P  P SG       Y+
Sbjct: 255 HKSRAGGRSNRGGRGN----RHKTQCQICSKFGHVADRCYFRYTPRNPPSG-------YS 307

BLAST of Moc11g31800 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.3e-21
Identity = 79/277 (28.52%), Postives = 133/277 (48.01%), Query Frame = 0

Query: 26  AALEGHGLEDYIDEESEIPSSNLLIIENSVSTQRVNPTYIKWKKQDRLIMSWLLGSMSEE 85
           A  +G+ L  ++D  + +P + +     + +  RVNP Y +WK+QD+LI S +LG++S  
Sbjct: 40  ALFDGYELAGFLDGSTTMPPATI----GTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMS 99

Query: 86  ILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNLIDS 145
           +   +    T  +IW +L +I+++ +   V +LRT+L    KG  ++ DYM+ +    D 
Sbjct: 100 VQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQ 159

Query: 146 LKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEKDLT 205
           L  +GK +  ++ +  +L  L  EY+  I  I AK    ++ E+   LL+ ES++    +
Sbjct: 160 LALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSS 219

Query: 206 ATNTKDSSFPYVNLAQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGRNERGRG 265
           AT    ++                   N  SHRN  T   +N G+  NNR   RN     
Sbjct: 220 ATVIPITA-------------------NAVSHRNTTTTNNNNNGN-RNNRYDNRNNNNNS 279

Query: 266 RPW------------YPKPRV-QCQICHKFGHTADKC 290
           +PW              KP + +CQIC   GH+A +C
Sbjct: 280 KPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRC 292

BLAST of Moc11g31800 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-14
Identity = 68/265 (25.66%), Postives = 126/265 (47.55%), Query Frame = 0

Query: 26  AALEGHGLEDYIDEESEIPSSNLLIIENSVSTQRVNPTYIKWKKQDRLIMSWLLGSMSEE 85
           A  +G+ L  ++D  + +P + +     + +  RVNP Y +W++QD+LI S +LG++S  
Sbjct: 40  ALFDGYELAGFLDGSTPMPPATI----GTDAVPRVNPDYTRWRRQDKLIYSAILGAISMS 99

Query: 86  ILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNLIDS 145
           +   +    T  +IW +L +I+++ +   V +LR                        D 
Sbjct: 100 VQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR-------------------FITRFDQ 159

Query: 146 LKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEKDLT 205
           L  +GK +  ++ +  +L  L  +Y+  I  I AK    S+ E+   L++RES+    L 
Sbjct: 160 LALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESK----LL 219

Query: 206 ATNTKDSSFPYVNLAQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGRNERGRG 265
           A N+ +      N+  H+++     ++N   +RN+N    +NR    +N  +  +   R 
Sbjct: 220 ALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNN--NNR----SNSWQPSSSGSRS 271

Query: 266 RPWYPKPRV-QCQICHKFGHTADKC 290
               PKP + +CQIC   GH+A +C
Sbjct: 280 DNRQPKPYLGRCQICSVQGHSAKRC 271

BLAST of Moc11g31800 vs. ExPASy TrEMBL
Match: A0A6J1DYD5 (uncharacterized protein LOC111024658 OS=Momordica charantia OX=3673 GN=LOC111024658 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.6e-58
Identity = 134/248 (54.03%), Postives = 182/248 (73.39%), Query Frame = 0

Query: 82  MSEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKN 141
           M+EEILADLL C T KEIW SL+Q+F+++NL KVM+L+T+L N+RKG LSLK+Y+RQIKN
Sbjct: 1   MAEEILADLLHCSTAKEIWVSLQQMFATQNLTKVMQLKTQLQNLRKGGLSLKEYIRQIKN 60

Query: 142 LIDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRME 201
           L+DSLKA GK++ TEDHI+HILSGLGSEYEST+SVIT K G ++IQ+VT+LLLS + R+E
Sbjct: 61  LVDSLKAAGKSMNTEDHIMHILSGLGSEYESTVSVITVKKGPLTIQDVTALLLSHQRRIE 120

Query: 202 KDLTATNTKDSSFP--YVNLAQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGR 261
           K+++A   KD + P   +NLA  Q  Q  + ++N+ S+ +++  +Y      DNNRGRGR
Sbjct: 121 KEISA--AKDVTLPSASINLAHQQFGQ--NNQNNSVSYNSNDNHRYQQHYSNDNNRGRGR 180

Query: 262 NERGRGRPWYPKPRVQCQICHKFGHTADKCYFRVPTGPNSGMNYNGRQYTQ--QSTNTFP 321
             R  GR W  + ++QCQICH+FGHTAD+ YFR     NS +    +  T+  QS++ + 
Sbjct: 181 FHRNGGRRWNSRNKIQCQICHRFGHTADRYYFR-----NSSVQQQNQYSTRYFQSSSPYH 239

Query: 322 QQNNMAAM 326
           QQ N AAM
Sbjct: 241 QQQNAAAM 239

BLAST of Moc11g31800 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 135/306 (44.12%), Postives = 197/306 (64.38%), Query Frame = 0

Query: 25  IAALEGHGLEDYIDEESEIPSSNLLIIENS--VSTQRVNPTYIKWKKQDRLIMSWLLGSM 84
           + ALE + LE++++ ESE PS  L+  E+S   +T   NP Y  WK+QDRLI SWLLGSM
Sbjct: 47  LTALEAYDLENFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSM 106

Query: 85  SEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNL 144
           SEEIL  +L CK+ KEIW +L+ IFSSR LA+ M+ + KLHNI+KG + LK+Y  +I   
Sbjct: 107 SEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQC 166

Query: 145 IDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEK 204
           +D+L ++ K ++++DHIL+IL+GLGS+Y+S ISVI+A+  S S+QEV SLLL++ES+ E 
Sbjct: 167 VDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNES 226

Query: 205 DLTATNTKDSSFPYVNL---AQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGR 264
            L +    +++ P VN+      + ++ Y   + N+ H NH+  Q   RG+  +NRGR  
Sbjct: 227 KLIS----ETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRG 286

Query: 265 NERGRGRPWYPKPRVQCQICHKFGHTADKCYFR-VPTGPNSGMNYNGRQYTQQSTNTFPQ 324
           N   R +P       QCQIC K G++AD+C+FR  P   +SG + N    +  + N  PQ
Sbjct: 287 N---RNKP-------QCQICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQ 338

BLAST of Moc11g31800 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 135/306 (44.12%), Postives = 197/306 (64.38%), Query Frame = 0

Query: 25  IAALEGHGLEDYIDEESEIPSSNLLIIENS--VSTQRVNPTYIKWKKQDRLIMSWLLGSM 84
           + ALE + LE++++ ESE PS  L+  E+S   +T   NP Y  WK+QDRLI SWLLGSM
Sbjct: 47  LTALEAYDLENFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSM 106

Query: 85  SEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNL 144
           SEEIL  +L CK+ KEIW +L+ IFSSR LA+ M+ + KLHNI+KG + LK+Y  +I   
Sbjct: 107 SEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQC 166

Query: 145 IDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEK 204
           +D+L ++ K ++++DHIL+IL+GLGS+Y+S ISVI+A+  S S+QEV SLLL++ES+ E 
Sbjct: 167 VDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNES 226

Query: 205 DLTATNTKDSSFPYVNL---AQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGR 264
            L +    +++ P VN+      + ++ Y   + N+ H NH+  Q   RG+  +NRGR  
Sbjct: 227 KLIS----ETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRG 286

Query: 265 NERGRGRPWYPKPRVQCQICHKFGHTADKCYFR-VPTGPNSGMNYNGRQYTQQSTNTFPQ 324
           N   R +P       QCQIC K G++AD+C+FR  P   +SG + N    +  + N  PQ
Sbjct: 287 N---RNKP-------QCQICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQ 338

BLAST of Moc11g31800 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.1e-55
Identity = 132/281 (46.98%), Postives = 180/281 (64.06%), Query Frame = 0

Query: 27  ALEGHGLEDYIDEESEIPSSNLLII--ENSVSTQRVNPTYIKWKKQDRLIMSWLLGSMSE 86
           AL+G+GLE YID   + P+  +     E+S S+ + NP Y +W KQD+LI +WLLGSM+E
Sbjct: 48  ALQGNGLESYIDSNEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNE 107

Query: 87  EILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKDYMRQIKNLID 146
           +IL+ +LDCK+ +EIW  LE +F+SR LA+VM+L+ KL N +KG+LSLKDY  +IKNL+D
Sbjct: 108 DILSQMLDCKSAREIWTVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVD 167

Query: 147 SLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLLSRESRMEKDL 206
           SL   GK ++TEDHI+HIL+GLG E+++ ISVITA+    ++QEV SLLL +E R E++L
Sbjct: 168 SLAIAGKKLSTEDHIMHILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNERNL 227

Query: 207 TATNTKDSSFPYVNLAQHQHSQQYSARHNNDSHRNHNTQQYDNRGHFDNNRGRGRNERGR 266
                 D S P VNL  +  S++ +  H +     H +  Y  RG   NNR   R     
Sbjct: 228 I---NSDGSLPSVNLTLNDSSKKNNL-HQSKCFNPHQS-NYSQRGRGTNNRSSNR----- 287

Query: 267 GRPWYPKPRVQCQICHKFGHTADKCYFRVP---TGPNSGMN 303
            R W    + QCQIC +FGHTA +CY R      GPN   N
Sbjct: 288 -RNWTGNNKPQCQICGRFGHTALRCYMRFERNFLGPNMNPN 317

BLAST of Moc11g31800 vs. ExPASy TrEMBL
Match: A0A5D3CRZ7 (Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00160 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.3e-48
Identity = 127/308 (41.23%), Postives = 188/308 (61.04%), Query Frame = 0

Query: 25  IAALEGHGLEDYIDEESE--------IPSSNLLIIENSVS--TQRVNPTYIKWKKQDRLI 84
           + ALE + LE Y D  +E         P+ + + +E+S +     +N  Y  WK+QDRLI
Sbjct: 15  LTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLI 74

Query: 85  MSWLLGSMSEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRTKLHNIRKGDLSLKD 144
            SWLLGSMSE+IL  +L   + K+IW +L+ I+SSR LAK M+ + KLHN++KG +SLK+
Sbjct: 75  SSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKE 134

Query: 145 YMRQIKNLIDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSVSIQEVTSLLL 204
           Y  +I+  +D+L ++ K I+T+DHIL+IL+GLG+EY+S IS+I+A+  S S+Q+  SLLL
Sbjct: 135 YFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLL 194

Query: 205 SRESRMEKDLTATNTKDSSFPYVNLAQHQHSQQYSARHNNDSHR---NHNTQQYDNRGHF 264
           ++ES++E  +T+    + S P VN+  H        + +  +HR   N+      N  + 
Sbjct: 195 TQESQIESKITS----EVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYH 254

Query: 265 DNNRGRGRNER-GRGRPWYPKPRVQCQICHKFGHTADKCYFR-VPTGPNSGMNYNGRQYT 318
             +R  GR+ R GRG     + + QCQIC KFGH AD+CYFR  P  P SG       Y+
Sbjct: 255 HKSRAGGRSNRGGRGN----RHKTQCQICSKFGHVADRCYFRYTPRNPPSG-------YS 307

BLAST of Moc11g31800 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-14
Identity = 56/191 (29.32%), Postives = 101/191 (52.88%), Query Frame = 0

Query: 66  KWKKQDRLIMSWLLGSMSEEILADLLDCK-TTKEIWNSLEQIFSSRNLAKVMELRTKLHN 125
           +WK++D L+  W+ G++++ +L  ++    T +++W SLE +F     A+ ++   +L  
Sbjct: 66  RWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRT 125

Query: 126 IRKGDLSLKDYMRQIKNLIDSLKAVGKTITTEDHILHILSGLGSEYESTISVITAKIGSV 185
               DLS+ +Y +++K+L D L  V   I+    ++H+L+GL  +Y+  ++VI  K    
Sbjct: 126 TTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFP 185

Query: 186 SIQEVTSLLLSRESRM----EKDLTATNTKDSS--FPYVNLAQHQHSQQYSARHNNDSHR 245
           S  E  S+LL  ESR+    +  L+ TN    S     V   Q ++ Q+Y   HNN+S+ 
Sbjct: 186 SFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEY---HNNNSNM 245

Query: 246 NHNTQQYDNRG 250
                +  NRG
Sbjct: 246 GRGRSKKKNRG 253

BLAST of Moc11g31800 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-07
Identity = 21/82 (25.61%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 61  NPTYIKWKKQDRLIMSWLLGSMSEEILADLLDCKTTKEIWNSLEQIFSSRNLAKVMELRT 120
           +P Y  W++ + ++M WL+ SM++++L  ++  +T  ++W  L ++F      K+ +LR 
Sbjct: 73  SPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRR 132

Query: 121 KLHNIRKGDLSLKDYMRQIKNL 143
           +L  +R+G  S+++Y  ++  +
Sbjct: 133 RLATLRQGGDSVEEYFGKLSKV 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158089.19.4e-5854.03uncharacterized protein LOC111024658 [Momordica charantia][more]
KAA0048297.13.4e-5544.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK10642.13.4e-5544.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_022154487.11.7e-5446.98uncharacterized protein LOC111021757 [Momordica charantia][more]
KAA0046195.18.8e-4841.23putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 p... [more]
Match NameE-valueIdentityDescription
Q94HW24.3e-2128.52Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.0e-1425.66Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DYD54.6e-5854.03uncharacterized protein LOC111024658 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5A7U2331.6e-5544.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CH971.6e-5544.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A6J1DLT98.1e-5546.98uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5D3CRZ74.3e-4841.23Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
AT5G48050.12.3e-1429.32CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
AT1G21280.16.2e-0725.61CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 67..202
e-value: 1.6E-24
score: 86.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..269
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 26..315
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 26..315

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g31800.1Moc11g31800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding