Moc10g02500 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g02500
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description30S ribosomal protein S12-B
Locationchr10: 1698286 .. 1698713 (+)
RNA-Seq ExpressionMoc10g02500
SyntenyMoc10g02500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTCTCAACAGCTCCCGTTCCTTTATGAGGTCCTATCGGGATAGGTAGGCCCAAGCCTTTCCCCTCTTCCCGACCGAACAGTAAGTTACCCACGGCTGACAAATAGGAATTTAGGCCGTAAAAGAAAGGCACCGGCCCCCCACTGGGATTTGGCTTTCCTTTTCTACGTGTGCAGTGCGTCAGCACTGGCGAAAAAGAGGTTGACTTTACTCAAGAAGAAGGAAGGGGCGGGGCCGGGTGCTTGTGGGCCCCCTCTGCAGCAAGTGCTTGTTGGACCCCGTTTCCCAAGAGGGGGCCGGGCTGTGTTTCCCCAGCGGTCGGCTAGTGGCGGCAGAAAACGAACTTGGGTGGGCTTCGCGCGGTTCGCATTTTCTTGTGTTGAGAGCTTCTCATTTATTTTAGTTTTTTTGCCAATTTTGTAA

mRNA sequence

ATGGAACCTCTCAACAGCTCCCGTTCCTTTATGAGGTCCTATCGGGATAGTGCGTCAGCACTGGCGAAAAAGAGGTTGACTTTACTCAAGAAGAAGGAAGGGGCGGGGCCGGGTGCTTGTGGGCCCCCTCTGCAGCAAGTGCTTGTTGGACCCCGTTTCCCAAGAGGGGGCCGGGCTGTGTTTCCCCAGCGGTCGGCTAGTGGCGGCAGAAAACGAACTTGGGTGGGCTTCGCGCGGTTCGCATTTTCTTGTGTTGAGAGCTTCTCATTTATTTTAGTTTTTTTGCCAATTTTGTAA

Coding sequence (CDS)

ATGGAACCTCTCAACAGCTCCCGTTCCTTTATGAGGTCCTATCGGGATAGTGCGTCAGCACTGGCGAAAAAGAGGTTGACTTTACTCAAGAAGAAGGAAGGGGCGGGGCCGGGTGCTTGTGGGCCCCCTCTGCAGCAAGTGCTTGTTGGACCCCGTTTCCCAAGAGGGGGCCGGGCTGTGTTTCCCCAGCGGTCGGCTAGTGGCGGCAGAAAACGAACTTGGGTGGGCTTCGCGCGGTTCGCATTTTCTTGTGTTGAGAGCTTCTCATTTATTTTAGTTTTTTTGCCAATTTTGTAA

Protein sequence

MEPLNSSRSFMRSYRDSASALAKKRLTLLKKKEGAGPGACGPPLQQVLVGPRFPRGGRAVFPQRSASGGRKRTWVGFARFAFSCVESFSFILVFLPIL
Homology
[Close]
BLAST of Moc10g02500 vs. NCBI nr
Match: PKI40736.1 (hypothetical protein CRG98_038874 [Punica granatum])

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = 0 

Query: 18  ASALAKKRLTLLKKKEGAGPGACGPPLQQVLVGPR--FPRGGRAVFPQRSASGGRKRTWV 77
           ++ALAKKR  LLKKK   G    GP  ++ L+ P   FPRGGRAVFPQR A+GGRKRT  
Sbjct: 338 STALAKKRSALLKKK---GRVLVGPLCRKSLLDPHLPFPRGGRAVFPQRPANGGRKRTRG 397

Query: 78  GFARFAFSCVESFSF 91
           G ARFAFSCVESFSF
Sbjct: 398 GSARFAFSCVESFSF 409

[Close]
BLAST of Moc10g02500 vs. NCBI nr
Match: KAF3452218.1 (hypothetical protein FNV43_RR08316 [Rhamnella rubrinervis])

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-11
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 31  KKEGAGPGACGPPLQQVLVG--PRFPRGGRAVFPQRSASGGRKRTWVGFARFAFSCVESF 90
           ++EGAG    GP   + L    PRFPRGGRAVFPQR ASGGRKRT VG ARFAFSCVESF
Sbjct: 266 EEEGAGRVLVGPLCCKCLSDSHPRFPRGGRAVFPQRPASGGRKRTRVGSARFAFSCVESF 325

[Close]
BLAST of Moc10g02500 vs. NCBI nr
Match: CAN71465.1 (hypothetical protein VITISV_038986 [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 7.6e-11
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 0 

Query: 31  KKEGAGPGACGPPLQQVLVGPRFPRGGRAVFPQRSASGGRKRTWVGFARFAFSCVESFSF 90
           ++EGAG    GP        PRFPRGGRAVFPQR ASGGRKRT VG ARFAFSCVESFSF
Sbjct: 420 EEEGAGRVLVGP-------HPRFPRGGRAVFPQRPASGGRKRTRVGSARFAFSCVESFSF 472

[Close]
BLAST of Moc10g02500 vs. NCBI nr
Match: EXC18469.1 (30S ribosomal protein S12-B [Morus notabilis])

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 51  PRFPRGGRAVFPQRSASGGRKRTWVGFARFAFSCVESFS 90
           PRFPRGGRAV PQR ASGGRKRT VG ARFAFSC++ +S
Sbjct: 120 PRFPRGGRAVIPQRPASGGRKRTRVGSARFAFSCIKLYS 158

[Close]
BLAST of Moc10g02500 vs. ExPASy TrEMBL
Match: A0A2I0IBJ1 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_038874 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = 0 

Query: 18  ASALAKKRLTLLKKKEGAGPGACGPPLQQVLVGPR--FPRGGRAVFPQRSASGGRKRTWV 77
           ++ALAKKR  LLKKK   G    GP  ++ L+ P   FPRGGRAVFPQR A+GGRKRT  
Sbjct: 338 STALAKKRSALLKKK---GRVLVGPLCRKSLLDPHLPFPRGGRAVFPQRPANGGRKRTRG 397

Query: 78  GFARFAFSCVESFSF 91
           G ARFAFSCVESFSF
Sbjct: 398 GSARFAFSCVESFSF 409

[Close]
BLAST of Moc10g02500 vs. ExPASy TrEMBL
Match: A5AMW0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_038986 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-11
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 0 

Query: 31  KKEGAGPGACGPPLQQVLVGPRFPRGGRAVFPQRSASGGRKRTWVGFARFAFSCVESFSF 90
           ++EGAG    GP        PRFPRGGRAVFPQR ASGGRKRT VG ARFAFSCVESFSF
Sbjct: 420 EEEGAGRVLVGP-------HPRFPRGGRAVFPQRPASGGRKRTRVGSARFAFSCVESFSF 472

[Close]
BLAST of Moc10g02500 vs. ExPASy TrEMBL
Match: W9RZ68 (30S ribosomal protein S12-B OS=Morus notabilis OX=981085 GN=L484_018650 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 51  PRFPRGGRAVFPQRSASGGRKRTWVGFARFAFSCVESFS 90
           PRFPRGGRAV PQR ASGGRKRT VG ARFAFSC++ +S
Sbjct: 120 PRFPRGGRAVIPQRPASGGRKRTRVGSARFAFSCIKLYS 158

The following BLAST results are available for this feature:
BLAST of Moc10g02500 vs. NCBI nr
Match NameE-valueIdentityDescription
PKI40736.14.0e-1265.33hypothetical protein CRG98_038874 [Punica granatum][more]
KAF3452218.13.4e-1170.97hypothetical protein FNV43_RR08316 [Rhamnella rubrinervis][more]
CAN71465.17.6e-1171.67hypothetical protein VITISV_038986 [Vitis vinifera][more]
EXC18469.12.3e-0779.4930S ribosomal protein S12-B [Morus notabilis][more]
BLAST of Moc10g02500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc10g02500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2I0IBJ11.9e-1265.33Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_038874 PE=4 SV=1[more]
A5AMW03.7e-1171.67Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_038986 PE=4 SV=1[more]
W9RZ681.1e-0779.4930S ribosomal protein S12-B OS=Morus notabilis OX=981085 GN=L484_018650 PE=3 SV=... [more]
BLAST of Moc10g02500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g02500.1Moc10g02500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome