Moc09g29160 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g29160
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty3-gypsy retrotransposon protein
Location	chr9: 21898391 .. 21899215 (-)
RNA-Seq Expression	Moc09g29160
Synteny	Moc09g29160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTGGATACCAACCTCCAAAATTCCAGCATTTCGATGGGAAGAGCAATTTCAAACAACATATTCCTCACGTTGTCGAAACTTGTGAGAATGCTGATACAAGAGGCGATCAATTGGTCAATCAGTTCGTCCGAACATTAAAGGGAAACGCCTTTGACTGGTATACTAATCTCGAGCTTGAAACGATCGAGAGTTGGGAACAGCTTGAAAGAGAATTCCTAAATCGCTTTTATAGTACGAAGAGAACTGTCAGCATGATGGAGCTCACGAACTCCAAACAAAGAAAAGGCGAACCGGTTGTTGAATATATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGGCTTACTGAACTATCCGCTGTTGAATTATGCAGTCAAGGTATGCATTGGGAACTTCTTTACATCCTTCAAGGTATAAAACCTCGCACCTTTGAAGAGCTAGCAACTCGTGCTCACGATATGAAACTAAGCATTGCTAATCGAGGAAGTAAGGATTCTTTAGTGCTGGACTTAGAGAAAGAAAGCAAACGTGTTGAGAAAACTTCAAATGAGTCTTTTGATGTAGACACAATCTCTCCCAAGTTGTTTTCAAAAATAAAAGGAAAGAGAATTGAGAAGCAAAAAGGAAATAGGAAAAGATGGCTAAGCTTGAAAGAAAGTCAAGAAAAAGTCTATCCTTTTCCTGATTCTGACATCCCTTATATGTTGGAACAATTACTAGAAACACGATTGATTGTACTTCCAGAGTGTATACGACCAGAAGAAATGAGTAAAGTTGATGATCCAAATATTGCAAGTACCACCGAGTTATAA

mRNA sequence

ATGTCTGCTGGATACCAACCTCCAAAATTCCAGCATTTCGATGGGAAGAGCAATTTCAAACAACATATTCCTCACGTTGTCGAAACTTGTGAGAATGCTGATACAAGAGGCGATCAATTGGTCAATCAGTTCGTCCGAACATTAAAGGGAAACGCCTTTGACTGGTATACTAATCTCGAGCTTGAAACGATCGAGAGTTGGGAACAGCTTGAAAGAGAATTCCTAAATCGCTTTTATAGTACGAAGAGAACTGTCAGCATGATGGAGCTCACGAACTCCAAACAAAGAAAAGGCGAACCGGTTGTTGAATATATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGGCTTACTGAACTATCCGCTGTTGAATTATGCAGTCAAGGTATGCATTGGGAACTTCTTTACATCCTTCAAGGTATAAAACCTCGCACCTTTGAAGAGCTAGCAACTCGTGCTCACGATATGAAACTAAGCATTGCTAATCGAGGAAGTAAGGATTCTTTAGTGCTGGACTTAGAGAAAGAAAGCAAACGTGTTGAGAAAACTTCAAATGAGTCTTTTGATGTAGACACAATCTCTCCCAAGTTGTTTTCAAAAATAAAAGGAAAGAGAATTGAGAAGCAAAAAGGAAATAGGAAAAGATGGCTAAGCTTGAAAGAAAGTCAAGAAAAAGTCTATCCTTTTCCTGATTCTGACATCCCTTATATGTTGGAACAATTACTAGAAACACGATTGATTGTACTTCCAGAGTGTATACGACCAGAAGAAATGAGTAAAGTTGATGATCCAAATATTGCAAGTACCACCGAGTTATAA

Coding sequence (CDS)

ATGTCTGCTGGATACCAACCTCCAAAATTCCAGCATTTCGATGGGAAGAGCAATTTCAAACAACATATTCCTCACGTTGTCGAAACTTGTGAGAATGCTGATACAAGAGGCGATCAATTGGTCAATCAGTTCGTCCGAACATTAAAGGGAAACGCCTTTGACTGGTATACTAATCTCGAGCTTGAAACGATCGAGAGTTGGGAACAGCTTGAAAGAGAATTCCTAAATCGCTTTTATAGTACGAAGAGAACTGTCAGCATGATGGAGCTCACGAACTCCAAACAAAGAAAAGGCGAACCGGTTGTTGAATATATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGGCTTACTGAACTATCCGCTGTTGAATTATGCAGTCAAGGTATGCATTGGGAACTTCTTTACATCCTTCAAGGTATAAAACCTCGCACCTTTGAAGAGCTAGCAACTCGTGCTCACGATATGAAACTAAGCATTGCTAATCGAGGAAGTAAGGATTCTTTAGTGCTGGACTTAGAGAAAGAAAGCAAACGTGTTGAGAAAACTTCAAATGAGTCTTTTGATGTAGACACAATCTCTCCCAAGTTGTTTTCAAAAATAAAAGGAAAGAGAATTGAGAAGCAAAAAGGAAATAGGAAAAGATGGCTAAGCTTGAAAGAAAGTCAAGAAAAAGTCTATCCTTTTCCTGATTCTGACATCCCTTATATGTTGGAACAATTACTAGAAACACGATTGATTGTACTTCCAGAGTGTATACGACCAGAAGAAATGAGTAAAGTTGATGATCCAAATATTGCAAGTACCACCGAGTTATAA

Protein sequence

MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLELETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESKRVEKTSNESFDVDTISPKLFSKIKGKRIEKQKGNRKRWLSLKESQEKVYPFPDSDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPNIASTTEL

Homology

[Close]

BLAST of Moc09g29160 vs. NCBI nr
Match: XP_022159413.1 (uncharacterized protein LOC111025834 [Momordica charantia])

HSP 1 Score: 490.0 bits (1260), Expect = 1.4e-134
Identity = 245/266 (92.11%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M AGYQPPKFQHFDGK N KQHI H VETCENA TRGDQLV QFVRTLKGNAFDWYT+LE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            ETIESWEQLE+EFLNRFYSTKRTVSMMELTNS+QRKGEPVVEYINRWRALSLDCKDRLT
Sbjct: 93  PETIESWEQLEKEFLNRFYSTKRTVSMMELTNSEQRKGEPVVEYINRWRALSLDCKDRLT 152

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVELC+QGMHWELLYILQ IKPRTFEELATRAHDM+LSIANRGSKDSLVLDLEKESK
Sbjct: 153 ELSAVELCTQGMHWELLYILQRIKPRTFEELATRAHDMELSIANRGSKDSLVLDLEKESK 212

Query: 181 RVEKTSNESFDVDTISPKLFSKIKGKRIEKQKGNRKRWLSLKESQEKVYPFPDSDIPYML 240
            VEKTSNE F V+TISPKLFSKIKGKRIEKQKGNRK WLSLKE QEKVYPFP+SDIPYML
Sbjct: 213 SVEKTSNEFFGVNTISPKLFSKIKGKRIEKQKGNRKIWLSLKERQEKVYPFPNSDIPYML 272

Query: 241 EQLLETRLIVLPECIRPEEMSKVDDP 267
           EQLLETRLIVLPECIRPEEMSKVDDP
Sbjct: 273 EQLLETRLIVLPECIRPEEMSKVDDP 298

[Close]

BLAST of Moc09g29160 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 2.3e-105
Identity = 201/275 (73.09%), Postives = 231/275 (84.00%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQPPKFQ FDGK N KQH+ H VETCENA +RGDQLV QFVR+LKGNAF+WYT+LE
Sbjct: 202 MPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLE 261

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            E+IESWEQLE+EFLNRFYST+RTVSMMELTN+KQRKGEPV++YINRWRALSLDCKDRLT
Sbjct: 262 PESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLT 321

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVE+C+QGMHW LLYILQGIKPRTFEELATRAHDM+LSIA+RG+KD LV +++K+ K
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFLVPEVKKDKK 381

Query: 181 R-------VEKTSNESFDVDTISPKLFSKIKGKRIEKQ-KGNRKRWLSLKESQEKVYPFP 240
                   V+ TS ES  V+T +P  FSK K  R+EK+  G+ +R L+LKE QEKVYPFP
Sbjct: 382 EMKGAEKIVKSTSKESMVVNT-TPLKFSKGKEARVEKKDDGSERRRLTLKERQEKVYPFP 441

Query: 241 DSDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           DSDI  MLEQLLE +LI LPEC RPE+  KVDDPN
Sbjct: 442 DSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPN 475

[Close]

BLAST of Moc09g29160 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 2.3e-105
Identity = 201/275 (73.09%), Postives = 231/275 (84.00%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQPPKFQ FDGK N KQH+ H VETCENA +RGDQLV QFVR+LKGNAF+WYT+LE
Sbjct: 202 MPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLE 261

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            E+IESWEQLE+EFLNRFYST+RTVSMMELTN+KQRKGEPV++YINRWRALSLDCKDRLT
Sbjct: 262 PESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLT 321

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVE+C+QGMHW LLYILQGIKPRTFEELATRAHDM+LSIA+RG+KD LV +++K+ K
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFLVPEVKKDKK 381

Query: 181 R-------VEKTSNESFDVDTISPKLFSKIKGKRIEKQ-KGNRKRWLSLKESQEKVYPFP 240
                   V+ TS ES  V+T +P  FSK K  R+EK+  G+ +R L+LKE QEKVYPFP
Sbjct: 382 EMKGAEKIVKSTSKESMVVNT-TPLKFSKGKEARVEKKDDGSERRRLTLKERQEKVYPFP 441

Query: 241 DSDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           DSDI  MLEQLLE +LI LPEC RPE+  KVDDPN
Sbjct: 442 DSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPN 475

[Close]

BLAST of Moc09g29160 vs. NCBI nr
Match: XP_031740568.1 (uncharacterized protein LOC116403508 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 2.3e-105
Identity = 201/275 (73.09%), Postives = 231/275 (84.00%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQPPKFQ FDGK N KQH+ H VETCENA +RGDQLV QFVR+LKGNAF+WYT+LE
Sbjct: 202 MPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLE 261

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            E+IESWEQLE+EFLNRFYST+RTVSMMELTN+KQRKGEPV++YINRWRALSLDCKDRLT
Sbjct: 262 PESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLT 321

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVE+C+QGMHW LLYILQGIKPRTFEELATRAHDM+LSIA+RG+KD LV +++K+ K
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFLVPEVKKDKK 381

Query: 181 R-------VEKTSNESFDVDTISPKLFSKIKGKRIEKQ-KGNRKRWLSLKESQEKVYPFP 240
                   V+ TS ES  V+T +P  FSK K  R+EK+  G+ +R L+LKE QEKVYPFP
Sbjct: 382 EMKGAEKIVKSTSKESMVVNT-TPLKFSKGKEARVEKKDDGSERRRLTLKERQEKVYPFP 441

Query: 241 DSDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           DSDI  MLEQLLE +LI LPEC RPE+  KVDDPN
Sbjct: 442 DSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPN 475

[Close]

BLAST of Moc09g29160 vs. NCBI nr
Match: XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 5.1e-105
Identity = 200/275 (72.73%), Postives = 231/275 (84.00%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQPPKFQ FDGK N KQH+ H VETCENA +RGDQLV QFVR+LKGNAF+WYT+LE
Sbjct: 1   MPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLE 60

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            E+IESWEQLE+EFLNRFYST+RTVSMMELTN+KQRKGEPV++YINRWRALSLDCKDRLT
Sbjct: 61  PESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLT 120

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVE+C+QGMHW LLYILQGIKPRTFEELATRAHDM+LSIA+RG+KD LV +++K+ K
Sbjct: 121 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFLVPEVKKDKK 180

Query: 181 R-------VEKTSNESFDVDTISPKLFSKIKGKRIEKQ-KGNRKRWLSLKESQEKVYPFP 240
                   V+ T+ ES  V+T +P  FSK K  R+EK+  G+ +R L+LKE QEKVYPFP
Sbjct: 181 EMKGAEKIVKSTAKESMVVNT-TPLKFSKGKEARVEKKDDGSERRRLTLKERQEKVYPFP 240

Query: 241 DSDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           DSDI  MLEQLLE +LI LPEC RPE+  KVDDPN
Sbjct: 241 DSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPN 274

[Close]

BLAST of Moc09g29160 vs. ExPASy TrEMBL
Match: A0A6J1DYQ8 (uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025834 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 6.6e-135
Identity = 245/266 (92.11%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M AGYQPPKFQHFDGK N KQHI H VETCENA TRGDQLV QFVRTLKGNAFDWYT+LE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            ETIESWEQLE+EFLNRFYSTKRTVSMMELTNS+QRKGEPVVEYINRWRALSLDCKDRLT
Sbjct: 93  PETIESWEQLEKEFLNRFYSTKRTVSMMELTNSEQRKGEPVVEYINRWRALSLDCKDRLT 152

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVELC+QGMHWELLYILQ IKPRTFEELATRAHDM+LSIANRGSKDSLVLDLEKESK
Sbjct: 153 ELSAVELCTQGMHWELLYILQRIKPRTFEELATRAHDMELSIANRGSKDSLVLDLEKESK 212

Query: 181 RVEKTSNESFDVDTISPKLFSKIKGKRIEKQKGNRKRWLSLKESQEKVYPFPDSDIPYML 240
            VEKTSNE F V+TISPKLFSKIKGKRIEKQKGNRK WLSLKE QEKVYPFP+SDIPYML
Sbjct: 213 SVEKTSNEFFGVNTISPKLFSKIKGKRIEKQKGNRKIWLSLKERQEKVYPFPNSDIPYML 272

Query: 241 EQLLETRLIVLPECIRPEEMSKVDDP 267
           EQLLETRLIVLPECIRPEEMSKVDDP
Sbjct: 273 EQLLETRLIVLPECIRPEEMSKVDDP 298

[Close]

BLAST of Moc09g29160 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.8e-101
Identity = 189/274 (68.98%), Postives = 219/274 (79.93%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQPPKFQ FDGK N KQHI H VETCENA +RGDQLV QFVR+LKGNAF+WYTNLE
Sbjct: 33  MPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTNLE 92

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
           L+ I+SWEQLE+EFLNRFYST+RT+SMMELTN+KQ KGEPV++YINRWRAL LDCKDRLT
Sbjct: 93  LKVIDSWEQLEKEFLNRFYSTRRTISMMELTNTKQWKGEPVIDYINRWRALRLDCKDRLT 152

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           +LS VE+C+QGMHW LLYILQGIKPRTFEELATRAHDM+LSIA+RG+KD  V +++K+ K
Sbjct: 153 KLSTVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFPVPEVKKDKK 212

Query: 181 RVEKTS-------NESFDVDTISPKLFSKIKGKRIEKQKGNRKRWLSLKESQEKVYPFPD 240
               T         ES  V+TI  K   + +G+  +K  G+ KR L+LKE QEKVYPFPD
Sbjct: 213 EANSTEKVVKSSVKESMVVNTIPLKFSKRKEGRAEKKDDGSEKRRLTLKERQEKVYPFPD 272

Query: 241 SDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           SD   MLEQLLE +LI LPEC RPE+   VDDPN
Sbjct: 273 SDNADMLEQLLEKQLIQLPECKRPEQAGNVDDPN 306

[Close]

BLAST of Moc09g29160 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.8e-100
Identity = 192/274 (70.07%), Postives = 220/274 (80.29%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQPPKFQ FDGK N KQH+ H +ETCE A TRGD LV QFVRTLKGNAFDWYT+LE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            E+I+SWEQLER+FLNRFYST+R VSM+ELT +KQRKGEPV++YINRWRALSLDCKDRLT
Sbjct: 262 PESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYINRWRALSLDCKDRLT 321

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVE+C+QGMHW LLYILQGIKPRTFEELATRAHDM+LSIANRG+ D LV ++ KE K
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGNNDLLVPEVRKEKK 381

Query: 181 RVEKT-------SNESFDVDTISPKLFSKIKGKRIEKQKGNRKRWLSLKESQEKVYPFPD 240
            V+ T       + E+  V T   KL SK K K  ++Q    KR  +LKE QEKVYPFPD
Sbjct: 382 EVKSTQKALKGVTKEAMVVSTTPLKLVSKEK-KMEKRQDEGEKRRPTLKERQEKVYPFPD 441

Query: 241 SDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           SD+P ML+QLLE +LI LPEC RP EM +V+DPN
Sbjct: 442 SDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPN 474

[Close]

BLAST of Moc09g29160 vs. ExPASy TrEMBL
Match: A0A5A7VE63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00390 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.7e-99
Identity = 188/274 (68.61%), Postives = 219/274 (79.93%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQ PKFQ FDGK N KQH+ H +ETCE A TRGD LV QFV+TLKGNAFDWYT+LE
Sbjct: 55  MPHGYQTPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVQTLKGNAFDWYTDLE 114

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            E+I+SWEQLER+FLNRFYST+R VSM+ELT +KQRKGEPV++YINRWRALSLDCKDRLT
Sbjct: 115 PESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYINRWRALSLDCKDRLT 174

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVE+C+QGMHW LLYILQGIKPRTFEELATRAHDM+LSIANRG+ D LV ++ KE K
Sbjct: 175 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGNNDLLVPEVRKEKK 234

Query: 181 RVEKT-------SNESFDVDTISPKLFSKIKGKRIEKQKGNRKRWLSLKESQEKVYPFPD 240
            V+ T       + E+  V T   KL SK K     + +G ++R  +LKE QEKVYPFPD
Sbjct: 235 EVKSTQKVLKGATKEAMVVSTTPLKLVSKEKKMEKHQDEGEKRR-PTLKERQEKVYPFPD 294

Query: 241 SDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           SD+P ML+QLLE +LI LPEC RP EM +V+DPN
Sbjct: 295 SDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPN 327

[Close]

BLAST of Moc09g29160 vs. ExPASy TrEMBL
Match: A0A5A7SXL9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G001290 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.3e-98
Identity = 188/275 (68.36%), Postives = 215/275 (78.18%), Query Frame = 0


Query: 1   MSAGYQPPKFQHFDGKSNFKQHIPHVVETCENADTRGDQLVNQFVRTLKGNAFDWYTNLE 60
           M  GYQPPKFQ FDG+ N KQHI H VETCENA +RGDQLV QFVR+LKGNAF+WYT+LE
Sbjct: 204 MPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRGDQLVKQFVRSLKGNAFEWYTDLE 263

Query: 61  LETIESWEQLEREFLNRFYSTKRTVSMMELTNSKQRKGEPVVEYINRWRALSLDCKDRLT 120
            E I++WEQLE EFLNRFYST+R VSMMELTN+KQRKGEPV++YINRWRALSLDCKD+LT
Sbjct: 264 PEVIDNWEQLEIEFLNRFYSTRRVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLT 323

Query: 121 ELSAVELCSQGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGSKDSLVLDLEKESK 180
           ELSAVE+C+QGMHWELLYILQGIKPRTFEELATRAHDM+LSIAN+G+KD LV     +  
Sbjct: 324 ELSAVEMCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIANKGAKDFLVQRTRSDRN 383

Query: 181 RVEKTS-------NESFDVDTISPKLFSKIK-GKRIEKQKGNRKRWLSLKESQEKVYPFP 240
            +  T        NES  V     K FSK K  K      G+ KR  +L+E Q+KVYPFP
Sbjct: 384 EINDTKKIANNVLNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFP 443

Query: 241 DSDIPYMLEQLLETRLIVLPECIRPEEMSKVDDPN 268
           DSD+  MLEQL+E +LI LPEC RPE+  KVDDPN
Sbjct: 444 DSDVADMLEQLIEKQLIQLPECKRPEQAGKVDDPN 478

The following BLAST results are available for this feature:

BLAST of Moc09g29160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159413.1	1.4e-134	92.11	uncharacterized protein LOC111025834 [Momordica charantia]	[more]
XP_031742199.1	2.3e-105	73.09	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	2.3e-105	73.09	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031740568.1	2.3e-105	73.09	uncharacterized protein LOC116403508 [Cucumis sativus]	[more]
XP_031742390.1	5.1e-105	72.73	uncharacterized protein LOC116401672 [Cucumis sativus]	[more]

BLAST of Moc09g29160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g29160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYQ8	6.6e-135	92.11	uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3C0W6	4.8e-101	68.98	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TZU9	1.8e-100	70.07	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7VE63	7.7e-99	68.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SXL9	1.3e-98	68.36	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Moc09g29160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 44..133 e-value: 1.8E-11 score: 44.1
None	No IPR available	PANTHER	PTHR33223	FAMILY NOT NAMED	coord: 5..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g29160.1	Moc09g29160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity