Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCACGGTCCGAGGAGAACAGACCGCTTCAAGGGAGTGCTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTTGAAACTCTCCCCAGTAGGGATGAGACGCTCGAGTTCAAGGTCGACCTGCCGAAGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAAGTAAGCATAGGAACCAAGCTGGGGGCCACCGACAGAGAGGAGCTAATCCACTTCCTCAGATCCAACTCGGATGTCTTTGCGTGGTCCCATGAGGACATGCCTGGCATTGACCCGAAAATTATGACGCATCGCCTCAGCATAGATCCGTCATTCCGACCTGTAAAGCAAAAAAGAAGACCTATAAACAAGGAGCGGAGTGATGTAATTGTTGAGGAAGTTAGCAAACTTTTGAAAGCTGAATACATAAGAGAAATTTCGTATCCCGAGTGGCTCTCTAATGTTGTATTAGTTAAAAAATCTAACGGAAAGTGGAGAATGTGCGTAGATTTTACGAACTTAAATAAGACATGCCCGAAAGATTGCTTCCCACTGCCGAGGATTGATCAGCTCGTGGACGCCACAGCCGGGCACGAACTGCTCACCTTCATGGACGCCTACTCTGGGTACAACCAAATCAAGATGCATGTCCCAGATCAAGGTCATACCGCGTTCATAACAGACCAAGGTCTGTACTGTTACAAGGTCATGCCCTTCGGGTTAAAGAACGCAGGAGCGACCTACCAGAGAATGGTGAACAAAATGTTCGCCAAGCAGATCGGCCGGAATATGGAAGTGTGTGTGGACGACATGCTTGTCAAGAGCAAGCAGTCTAAGTCGCATCTCTCCGATCTGACTGAAGCCTTCGAGGTTCTGAGGACATATCAAATGAAGCTCAACCCAGCTAAATGTGCCTTTGGAGTCTCTTCGGGAAAATTCCTTGGCTTCATGGTGAACAACCGGGGAATCGAGGCCAACCCCGAAAAGATTAAAGCCGTGCTCAAGATGGAGGCACCTAAGACGCTGAAGCAGCTTCAGTGCCTCAATGGCAGGATTGCGGCCCTGAACCGATTTGTTTCAAGATCGACAGATAAGTGCCTTTCTTTCTTCAAAGTCCTACGGAGGAAAGGGCCGTTTGAATGGATAGCGGAGTGCGATCAAGCATTTCAGCAGTTGAAAAGCTACCTCTGTTCGGCACCTTTGCTCGCCAAGCCCATGCCGGGGGACAAGCTCCAATTGTACTTAGCAGTGTCTGACAGCGCCGTCAGCTCGGCCCTAATCAGGCAAGAGGAAGCGCGGCAAAACCCGGTCTACTACACAAGCAAGGCTATGACCGAAGCCGAGACCAGATACCCTCAAATGGAAAAGTTGGCTCTTGCTTTAGTCACCTCGGCCCGACGGCTTAGACCATACTTCCAAGCCCATACTGTGGTGGTGCTCACTAACTTGCCCCTAAAAAACATCTTCCATAAGCCAGAAGTTTCTGGACGCCTGATGAAGTGGGCAATGGAGCTAAGTGAGTACGACATCCAGTTCGAACCCAGAACTGCGTTGAAAGGACAAGCAGCGGCAGATTTCATAGCCGAGCTCACACCACCTTCCGAGCTGAGCGAGTCCGACCTACCGTGGACAATCTATGTCGACGGATCCTCCAACGAGAAGGGGTGCGGGGCCGGGGTCCTCTTGCTCGGACCAGGAGGCGAGCGATTTGAGTATTCCTTGCGGTTCGGCTTCGGGACTTCTAACAACGAGGCTGAATATGAAGCATTTATTGCCGGCCTGTGAATCGCTAGAGCATTGGGGGCCTCTTGTGTTAAGGTCTTCAGCGACTCCCAGCTGGTTGTGGGCCAGATCAAGGAAGAGTACCAAGCCAAAGACTCCCGAATGTAGAAGTATTTGGGCAAGGTCAGATCGTACCTCGCCCAGTTTCGAACTTACAAAGTAAGCCGGGTTCCCCGAGCAGAAAATTCTAATGCTGACGCCTTGGCCAAGTTAGCATCGGCGTACGAGACCGACCTGACCAGGTCGGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAAAGTCCTCATGGATGGACCCGATTGCGGACTCATTAGGGGCAACTCACCACAAGACCCTAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCTGCCTCTATTGAGATGTCTAACCCCTGA
mRNA sequence
ATGGGCACGGTCCGAGGAGAACAGACCGCTTCAAGGGAGTGCTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTTGAAACTCTCCCCAGTAGGGATGAGACGCTCGAGTTCAAGGTCGACCTGCCGAAGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAATTAGCATCGGCGTACGAGACCGACCTGACCAGGTCGGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAAAGTCCTCATGGATGGACCCGATTGCGGACTCATTAGGGGCAACTCACCACAAGACCCTAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCTGCCTCTATTGAGATGTCTAACCCCTGA
Coding sequence (CDS)
ATGGGCACGGTCCGAGGAGAACAGACCGCTTCAAGGGAGTGCTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTTGAAACTCTCCCCAGTAGGGATGAGACGCTCGAGTTCAAGGTCGACCTGCCGAAGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAATTAGCATCGGCGTACGAGACCGACCTGACCAGGTCGGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAAAGTCCTCATGGATGGACCCGATTGCGGACTCATTAGGGGCAACTCACCACAAGACCCTAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCTGCCTCTATTGAGATGTCTAACCCCTGA
Protein sequence
MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQLASAYETDLTRSVPVEILDNPSISEPDLMEIGAPKSSWMDPIADSLGATHHKTLRSAESWQGEQLGSWSEVEHCTDAAFPASIEMSNP
Homology
BLAST of Moc09g27870 vs. NCBI nr
Match:
XP_022158219.1 (protein NYNRIN-like [Momordica charantia])
HSP 1 Score: 164.1 bits (414), Expect = 9.7e-37
Identity = 98/168 (58.33%), Postives = 103/168 (61.31%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQTASRECYASALKGSSVCALE S +ETLEFK DLP+REF+APTEELELVPL
Sbjct: 44 VGTVRGEQTASRECYASALKGSSVCALEAHASGNETLEFKADLPRREFSAPTEELELVPL 103
Query: 61 LSPEKQ------------------------------------------------------ 111
LS EKQ
Sbjct: 104 LSLEKQVFNDSQLVVSQIKDEYQAKDTRMEKYLGKVRSYLAQFLTYEVSRIPRAENSNAD 163
BLAST of Moc09g27870 vs. NCBI nr
Match:
XP_022152110.1 (uncharacterized protein LOC111019899 [Momordica charantia])
HSP 1 Score: 109.0 bits (271), Expect = 3.7e-20
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQTASRECYAS LKG+SVCALETL SRD TLEF+ DLP REFAAP EELELVPL
Sbjct: 373 VGTVRGEQTASRECYASXLKGTSVCALETLTSRDGTLEFEADLPXREFAAPXEELELVPL 432
Query: 61 LSPEKQL 68
LS EKQ+
Sbjct: 433 LSXEKQV 439
BLAST of Moc09g27870 vs. NCBI nr
Match:
XP_022157676.1 (uncharacterized protein LOC111024332 [Momordica charantia])
HSP 1 Score: 105.9 bits (263), Expect = 3.1e-19
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQT SRECYA+ALKGSSVCALETL RD TLE + DLP++EFAAPTEELELVPL
Sbjct: 333 VGTVRGEQTVSRECYAAALKGSSVCALETL--RDGTLELEADLPRKEFAAPTEELELVPL 392
Query: 61 LSPEKQ 67
LSPEKQ
Sbjct: 393 LSPEKQ 396
BLAST of Moc09g27870 vs. NCBI nr
Match:
XP_022155866.1 (uncharacterized protein LOC111022880 [Momordica charantia])
HSP 1 Score: 105.5 bits (262), Expect = 4.1e-19
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQ ASRECYA+ALKG SVCALETL RD TLEF+ +LP++EFAAPTEELELVPL
Sbjct: 264 VGTVRGEQAASRECYAAALKGPSVCALETL--RDGTLEFEANLPRKEFAAPTEELELVPL 323
Query: 61 LSPEKQL 68
LSPEKQL
Sbjct: 324 LSPEKQL 328
BLAST of Moc09g27870 vs. NCBI nr
Match:
XP_022150760.1 (uncharacterized protein LOC111018823 [Momordica charantia])
HSP 1 Score: 102.8 bits (255), Expect = 2.6e-18
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+G VRGEQ ASRECYASALKGSSVCALETL SRD TLEFK +LP+REFAAPTEELELVPL
Sbjct: 510 VGMVRGEQIASRECYASALKGSSVCALETLVSRDGTLEFKANLPRREFAAPTEELELVPL 569
Query: 61 LSPEKQLASAYETDLTRSVPVEILDN 87
L + +E +L + +D+
Sbjct: 570 LRYKYNENIDHEQELDEKSSLNKIDD 595
BLAST of Moc09g27870 vs. ExPASy TrEMBL
Match:
A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 4.7e-37
Identity = 98/168 (58.33%), Postives = 103/168 (61.31%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQTASRECYASALKGSSVCALE S +ETLEFK DLP+REF+APTEELELVPL
Sbjct: 44 VGTVRGEQTASRECYASALKGSSVCALEAHASGNETLEFKADLPRREFSAPTEELELVPL 103
Query: 61 LSPEKQ------------------------------------------------------ 111
LS EKQ
Sbjct: 104 LSLEKQVFNDSQLVVSQIKDEYQAKDTRMEKYLGKVRSYLAQFLTYEVSRIPRAENSNAD 163
BLAST of Moc09g27870 vs. ExPASy TrEMBL
Match:
A0A6J1DD03 (uncharacterized protein LOC111019899 OS=Momordica charantia OX=3673 GN=LOC111019899 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQTASRECYAS LKG+SVCALETL SRD TLEF+ DLP REFAAP EELELVPL
Sbjct: 373 VGTVRGEQTASRECYASXLKGTSVCALETLTSRDGTLEFEADLPXREFAAPXEELELVPL 432
Query: 61 LSPEKQL 68
LS EKQ+
Sbjct: 433 LSXEKQV 439
BLAST of Moc09g27870 vs. ExPASy TrEMBL
Match:
A0A6J1DYW5 (uncharacterized protein LOC111024332 OS=Momordica charantia OX=3673 GN=LOC111024332 PE=4 SV=1)
HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQT SRECYA+ALKGSSVCALETL RD TLE + DLP++EFAAPTEELELVPL
Sbjct: 333 VGTVRGEQTVSRECYAAALKGSSVCALETL--RDGTLELEADLPRKEFAAPTEELELVPL 392
Query: 61 LSPEKQ 67
LSPEKQ
Sbjct: 393 LSPEKQ 396
BLAST of Moc09g27870 vs. ExPASy TrEMBL
Match:
A0A6J1DT04 (uncharacterized protein LOC111022880 OS=Momordica charantia OX=3673 GN=LOC111022880 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+GTVRGEQ ASRECYA+ALKG SVCALETL RD TLEF+ +LP++EFAAPTEELELVPL
Sbjct: 264 VGTVRGEQAASRECYAAALKGPSVCALETL--RDGTLEFEANLPRKEFAAPTEELELVPL 323
Query: 61 LSPEKQL 68
LSPEKQL
Sbjct: 324 LSPEKQL 328
BLAST of Moc09g27870 vs. ExPASy TrEMBL
Match:
A0A6J1D9E1 (uncharacterized protein LOC111018823 OS=Momordica charantia OX=3673 GN=LOC111018823 PE=4 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 0
Query: 1 MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPL 60
+G VRGEQ ASRECYASALKGSSVCALETL SRD TLEFK +LP+REFAAPTEELELVPL
Sbjct: 510 VGMVRGEQIASRECYASALKGSSVCALETLVSRDGTLEFKANLPRREFAAPTEELELVPL 569
Query: 61 LSPEKQLASAYETDLTRSVPVEILDN 87
L + +E +L + +D+
Sbjct: 570 LRYKYNENIDHEQELDEKSSLNKIDD 595
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DYS0 | 4.7e-37 | 58.33 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1 | [more] |
A0A6J1DD03 | 1.8e-20 | 83.58 | uncharacterized protein LOC111019899 OS=Momordica charantia OX=3673 GN=LOC111019... | [more] |
A0A6J1DYW5 | 1.5e-19 | 83.33 | uncharacterized protein LOC111024332 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A6J1DT04 | 2.0e-19 | 82.09 | uncharacterized protein LOC111022880 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1D9E1 | 1.3e-18 | 65.12 | uncharacterized protein LOC111018823 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
Match Name | E-value | Identity | Description | |