Moc09g27540 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g27540
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr9: 20614541 .. 20614774 (-)
RNA-Seq ExpressionMoc09g27540
SyntenyMoc09g27540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAACCAGCAAACTCAACCAACACGGCCGACCGAAGAGCTCTGGCACCCAATGATGGCCACCAGAGGGAGGTCGGGGCAGAAGTGGTAGAGGGACAGGTTCATGAAGGCCTTGGGATCGAGCCTCTCTGTAGGTCGGCACGCATAACCACGCTTGTCCTACCACCGGCACATCTAAAGCCGTCTAAGGCCAATCGCGGCCGAGGTGGTGGCTCGAGGAGAACCACTTGA

mRNA sequence

ATGGTTCAACCAGCAAACTCAACCAACACGGCCGACCGAAGAGCTCTGGCACCCAATGATGGCCACCAGAGGGAGGTCGGGGCAGAAGTGGTAGAGGGACAGGTTCATGAAGGCCTTGGGATCGAGCCTCTCTGTAGGTCGGCACGCATAACCACGCTTGTCCTACCACCGGCACATCTAAAGCCGTCTAAGGCCAATCGCGGCCGAGGTGGTGGCTCGAGGAGAACCACTTGA

Coding sequence (CDS)

ATGGTTCAACCAGCAAACTCAACCAACACGGCCGACCGAAGAGCTCTGGCACCCAATGATGGCCACCAGAGGGAGGTCGGGGCAGAAGTGGTAGAGGGACAGGTTCATGAAGGCCTTGGGATCGAGCCTCTCTGTAGGTCGGCACGCATAACCACGCTTGTCCTACCACCGGCACATCTAAAGCCGTCTAAGGCCAATCGCGGCCGAGGTGGTGGCTCGAGGAGAACCACTTGA

Protein sequence

MVQPANSTNTADRRALAPNDGHQREVGAEVVEGQVHEGLGIEPLCRSARITTLVLPPAHLKPSKANRGRGGGSRRTT
Homology
BLAST of Moc09g27540 vs. NCBI nr
Match: XP_022159327.1 (uncharacterized protein LOC111025738 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0

Query: 1  MVQPANSTNTADRRALAPNDGHQREVGAEVVEGQVHEGLGIEPLCRSARITTLVLPPAHL 60
          MVQP +STNT DRRAL  NDGHQREVGAEVVEGQ+HEGLG EP CRSARITT  L PAH 
Sbjct: 1  MVQPVDSTNTGDRRALVANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDLSPAHP 60

Query: 61 KPSKANRGRGGGSRRTT 78
          KP KANRGRGG SRRTT
Sbjct: 61 KPFKANRGRGGASRRTT 77

BLAST of Moc09g27540 vs. NCBI nr
Match: XP_022152854.1 (uncharacterized protein LOC111020479 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22
Identity = 58/65 (89.23%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MVQPANSTNTADRRALAPNDGHQREVGAEVVEGQVHEGLGIEPLCRSARITTLVLPPAHL 60
          MVQPANSTNTADRRALA N GHQREVGAEVVEGQ HE LG EPLCRSARITT VLPPAH 
Sbjct: 1  MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEPLCRSARITTPVLPPAHP 60

Query: 61 KPSKA 66
          KPSKA
Sbjct: 61 KPSKA 65

BLAST of Moc09g27540 vs. NCBI nr
Match: XP_022156638.1 (uncharacterized protein LOC111023488 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 8.6e-10
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 1  MVQPANSTNTADRRALAPNDGHQREVGAEVVEGQVHEGLGIEPLCRSARITTLVLPPAHL 60
          MVQP  S NTA+RRAL  N+  Q E+ A+V E Q   G  ++P  RS R    +LPPAH 
Sbjct: 1  MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHP 60

Query: 61 KPSKANRGRGGGS 74
          +  KANRGRGGG+
Sbjct: 61 RSGKANRGRGGGT 73

BLAST of Moc09g27540 vs. ExPASy TrEMBL
Match: A0A6J1DZJ1 (uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025738 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0

Query: 1  MVQPANSTNTADRRALAPNDGHQREVGAEVVEGQVHEGLGIEPLCRSARITTLVLPPAHL 60
          MVQP +STNT DRRAL  NDGHQREVGAEVVEGQ+HEGLG EP CRSARITT  L PAH 
Sbjct: 1  MVQPVDSTNTGDRRALVANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDLSPAHP 60

Query: 61 KPSKANRGRGGGSRRTT 78
          KP KANRGRGG SRRTT
Sbjct: 61 KPFKANRGRGGASRRTT 77

BLAST of Moc09g27540 vs. ExPASy TrEMBL
Match: A0A6J1DHB3 (uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020479 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 58/65 (89.23%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MVQPANSTNTADRRALAPNDGHQREVGAEVVEGQVHEGLGIEPLCRSARITTLVLPPAHL 60
          MVQPANSTNTADRRALA N GHQREVGAEVVEGQ HE LG EPLCRSARITT VLPPAH 
Sbjct: 1  MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEPLCRSARITTPVLPPAHP 60

Query: 61 KPSKA 66
          KPSKA
Sbjct: 61 KPSKA 65

BLAST of Moc09g27540 vs. ExPASy TrEMBL
Match: A0A6J1DR60 (uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023488 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 1  MVQPANSTNTADRRALAPNDGHQREVGAEVVEGQVHEGLGIEPLCRSARITTLVLPPAHL 60
          MVQP  S NTA+RRAL  N+  Q E+ A+V E Q   G  ++P  RS R    +LPPAH 
Sbjct: 1  MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHP 60

Query: 61 KPSKANRGRGGGS 74
          +  KANRGRGGG+
Sbjct: 61 RSGKANRGRGGGT 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159327.16.6e-2681.82uncharacterized protein LOC111025738 [Momordica charantia][more]
XP_022152854.13.4e-2289.23uncharacterized protein LOC111020479 [Momordica charantia][more]
XP_022156638.18.6e-1052.05uncharacterized protein LOC111023488 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DZJ13.2e-2681.82uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DHB31.6e-2289.23uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DR604.2e-1052.05uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g27540.1Moc09g27540.1mRNA