Moc09g15880 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g15880
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionNADH-ubiquinone oxidoreductase chain 5
Locationchr9: 13143329 .. 13144049 (+)
RNA-Seq ExpressionMoc09g15880
SyntenyMoc09g15880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTCGATACCCACTTGCTTGGAGTGCGGGTAAGGGCTCACCTGTTGATTGTGTTGTTGCATGCTTTTTGGTAGAGCCGCCACCTCCCACGGCTACAGCCAGCACCAGGATGGTGCCTATATATATATAAAGGTATAGGCACCAGTTCATTCAGTCAATGAAGCTGCAGTCGGTTCTGATGATTATGCCGTTGATTCGGTAGATGAGTCAGTCGGTTCGGAAGTTGGTTCAGCGATATCTGTCGTCGATGGGGTAGAGGGTCTGCAGATACTCGTCGAGCTCCTCATTGCCCCAATCTTCCCTGTAGGCTCCCTGCTCCGCCAGCGCGACAACTGTCAAAATCATTTGACGCTTCTTCTCACTGAGCAGCCCCTCGACTTACACTTCAGGTTTGGGGAGCTCCGGCAGGGGGACTTGAGTCTCAGCGGAACCTTCCCTTTTTCTTCTCTCTCCTTTCCCTCATCTCCCGGGTCCTCAACCGAATTTGCTCCATTTTGCTCAGTTGGGGGAGCGGAGGTACGCTCGAGCGGTGGCTGGGCAGTGATCTTTGTGGTAGCGGGGGTCGAACTCGGAAGGCTGGCCGGGGTTGTGTTCTTCCGAGCGGACGAGGTCGGCTCGGTGACCGAGGGCTTGCGTAGAGGCGGCATTGCGATCACGGGCTTGGACGTCACTTCTTCATTTCTCGGCTTTTTGGATGGGGGGCTCCTCCCCGAGTGA

mRNA sequence

ATGTCCGTCGATACCCACTTGCTTGGAGTGCGGGCACCAGTTCATTCAGTCAATGAAGCTGCAGTCGGTTCTGATGATTATGCCGTTGATTCGGTAGATGAGTCAGTCGGTTCGGAAGTTGGTTCAGCGATATCTGTCGTCGATGGGGTAGAGGGTCTGCAGATACTCGTCGAGCTCCTCATTGCCCCAATCTTCCCTGTAGGCTCCCTGCTCCGCCAGCGCGACAACTGTCAAAATCATTTGACGCTTCTTCTCACTGAGCAGCCCCTCGACTTACACTTCAGGTTTGGGGAGCTCCGGCAGGGGGACTTGAGTCTCAGCGGAACCTTCCCTTTTTCTTCTCTCTCCTTTCCCTCATCTCCCGGGTCCTCAACCGAATTTGCTCCATTTTGCTCAGTTGGGGGAGCGGAGGTACGCTCGAGCGGTGGCTGGGCAGTGATCTTTGTGGTAGCGGGGGTCGAACTCGGAAGGCTGGCCGGGGTTGTGTTCTTCCGAGCGGACGAGGTCGGCTCGGTGACCGAGGGCTTGCGTAGAGGCGGCATTGCGATCACGGGCTTGGACGTCACTTCTTCATTTCTCGGCTTTTTGGATGGGGGGCTCCTCCCCGAGTGA

Coding sequence (CDS)

ATGTCCGTCGATACCCACTTGCTTGGAGTGCGGGCACCAGTTCATTCAGTCAATGAAGCTGCAGTCGGTTCTGATGATTATGCCGTTGATTCGGTAGATGAGTCAGTCGGTTCGGAAGTTGGTTCAGCGATATCTGTCGTCGATGGGGTAGAGGGTCTGCAGATACTCGTCGAGCTCCTCATTGCCCCAATCTTCCCTGTAGGCTCCCTGCTCCGCCAGCGCGACAACTGTCAAAATCATTTGACGCTTCTTCTCACTGAGCAGCCCCTCGACTTACACTTCAGGTTTGGGGAGCTCCGGCAGGGGGACTTGAGTCTCAGCGGAACCTTCCCTTTTTCTTCTCTCTCCTTTCCCTCATCTCCCGGGTCCTCAACCGAATTTGCTCCATTTTGCTCAGTTGGGGGAGCGGAGGTACGCTCGAGCGGTGGCTGGGCAGTGATCTTTGTGGTAGCGGGGGTCGAACTCGGAAGGCTGGCCGGGGTTGTGTTCTTCCGAGCGGACGAGGTCGGCTCGGTGACCGAGGGCTTGCGTAGAGGCGGCATTGCGATCACGGGCTTGGACGTCACTTCTTCATTTCTCGGCTTTTTGGATGGGGGGCTCCTCCCCGAGTGA

Protein sequence

MSVDTHLLGVRAPVHSVNEAAVGSDDYAVDSVDESVGSEVGSAISVVDGVEGLQILVELLIAPIFPVGSLLRQRDNCQNHLTLLLTEQPLDLHFRFGELRQGDLSLSGTFPFSSLSFPSSPGSSTEFAPFCSVGGAEVRSSGGWAVIFVVAGVELGRLAGVVFFRADEVGSVTEGLRRGGIAITGLDVTSSFLGFLDGGLLPE
Homology
[Close]
BLAST of Moc09g15880 vs. NCBI nr
Match: CAB4096857.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-26
Identity = 75/115 (65.22%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 57  VELLIAPIFPVGSLLRQRDNCQNHLTLLLTEQPLDLHFRFGELRQGDLSLSGTFPFSSLS 116
           VELLIAPIFPVGSLLRQRDNC NHLTLLLTEQPLD +FRFGELRQG+LSLS TFPF    
Sbjct: 22  VELLIAPIFPVGSLLRQRDNCPNHLTLLLTEQPLDFYFRFGELRQGNLSLSRTFPFFISP 81

Query: 117 FPSSPGSSTEFAPFCSVGGAEVRSSGGWAVIFVVAGVELGRLAGVVFFRADEVGS 172
           FP                GAEV SSGGWAVIFVVAG +  R AG+    A ++ S
Sbjct: 82  FP-------RILSILLSWGAEVPSSGGWAVIFVVAGGKQPRPAGLYAAHAKKLFS 129

[Close]
BLAST of Moc09g15880 vs. NCBI nr
Match: GER39048.1 (RNA-dependent RNA polymerase [Striga asiatica])

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-08
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 140 SSGGWAVIFVVAGVELGRLAGVVFFRADEVGSVTEGLR 178
           SSGGWAVIFVVAGVE GRLAGVV FRADEVGSVTEGLR
Sbjct: 204 SSGGWAVIFVVAGVEFGRLAGVVSFRADEVGSVTEGLR 241

[Close]
BLAST of Moc09g15880 vs. NCBI nr
Match: GFY99289.1 (hypothetical protein Acr_13g0006900 [Actinidia rufa])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-05
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 29 VDSVDESVGSEVGSAISVVDGVEGLQILVELLIAPIFPVGSL 71
          VDSVDES    VGSAI VVDGVEGLQILVELLIAPIFP G+L
Sbjct: 9  VDSVDES----VGSAIDVVDGVEGLQILVELLIAPIFPAGTL 46

[Close]
BLAST of Moc09g15880 vs. ExPASy TrEMBL
Match: A0A6S7N740 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS24445 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 75/115 (65.22%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 57  VELLIAPIFPVGSLLRQRDNCQNHLTLLLTEQPLDLHFRFGELRQGDLSLSGTFPFSSLS 116
           VELLIAPIFPVGSLLRQRDNC NHLTLLLTEQPLD +FRFGELRQG+LSLS TFPF    
Sbjct: 22  VELLIAPIFPVGSLLRQRDNCPNHLTLLLTEQPLDFYFRFGELRQGNLSLSRTFPFFISP 81

Query: 117 FPSSPGSSTEFAPFCSVGGAEVRSSGGWAVIFVVAGVELGRLAGVVFFRADEVGS 172
           FP                GAEV SSGGWAVIFVVAG +  R AG+    A ++ S
Sbjct: 82  FP-------RILSILLSWGAEVPSSGGWAVIFVVAGGKQPRPAGLYAAHAKKLFS 129

[Close]
BLAST of Moc09g15880 vs. ExPASy TrEMBL
Match: A0A5A7Q2I0 (RNA-dependent RNA polymerase OS=Striga asiatica OX=4170 GN=STAS_15577 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 140 SSGGWAVIFVVAGVELGRLAGVVFFRADEVGSVTEGLR 178
           SSGGWAVIFVVAGVE GRLAGVV FRADEVGSVTEGLR
Sbjct: 204 SSGGWAVIFVVAGVEFGRLAGVVSFRADEVGSVTEGLR 241

[Close]
BLAST of Moc09g15880 vs. ExPASy TrEMBL
Match: A0A7J0FM97 (NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g0006900 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-06
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 29 VDSVDESVGSEVGSAISVVDGVEGLQILVELLIAPIFPVGSL 71
          VDSVDES    VGSAI VVDGVEGLQILVELLIAPIFP G+L
Sbjct: 9  VDSVDES----VGSAIDVVDGVEGLQILVELLIAPIFPAGTL 46

The following BLAST results are available for this feature:
BLAST of Moc09g15880 vs. NCBI nr
Match NameE-valueIdentityDescription
CAB4096857.12.7e-2665.22unnamed protein product [Lactuca saligna][more]
GER39048.12.5e-0894.74RNA-dependent RNA polymerase [Striga asiatica][more]
GFY99289.12.0e-0583.33hypothetical protein Acr_13g0006900 [Actinidia rufa][more]
BLAST of Moc09g15880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g15880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6S7N7401.3e-2665.22Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS24445 PE=4 SV=1[more]
A0A5A7Q2I01.2e-0894.74RNA-dependent RNA polymerase OS=Striga asiatica OX=4170 GN=STAS_15577 PE=4 SV=1[more]
A0A7J0FM979.6e-0683.33NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g000... [more]
BLAST of Moc09g15880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g15880.1Moc09g15880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042773 ATP synthesis coupled electron transport
biological_process GO:0001172 transcription, RNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity