Moc09g15060 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g15060
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibulose bisphosphate carboxylase large chain
Locationchr9: 12925255 .. 12927070 (-)
RNA-Seq ExpressionMoc09g15060
SyntenyMoc09g15060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTCTCATTCGACATTCTCTCTTACCAAGCTCTCGTACTCGCCAGGGTTGAGGAGGCAGTCCGTGAGCTAATTGGCTTCGAGATTGCGTATACGCGAAAAGAGCTCGCTTTCTACTTTCTACCTCGGCGTTTTGTGCCCGGTTCTGGTTCAGGAAAGGGTCTTATCTCTTTCATTGGAGCACATTGATGCCGAAGGAGTCTTCGGAACCGGTGGAGAGGCTATGATGATTGAAGGCTATTCAAATAGCATGACTGATACCACAAAGAAAGGGGTATCTAAGTCACACCAGTGGAATAGCTTTTTAAGAATAATTCTCTCGATATATGATACCAAAAACCTGCCTTATGACTGATAAGGTAAGGGGTTTCAAAAGAAAAAATAAAATGACAATTCTACGTGTGATAGAAAAAAATGGAGATCTTCTTTTTTTTTCAGTGTGCGCGTTCGCCTGCCTTCCTGACCACGGATAGGCTACGGGGCTTTGCACTTCGGCCCCTGAGAATACCACATCAAGGTGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTGCACCTCGTCTCACCCCCCCGGAGCATATAGATCCACCCAATCGATGAACACTCAAACCAAACTCGCCCATCCTTTTGGGCACAGGGACGCGAGAACCAATCCGAGTAATCAGCAGCTTTTTTTATAAATCTACCTCGCCAAAAAGCCGTCTCGTGCAGGAGCGAAGCTGCTTTACCGAGTTTACGAGGTGAAGGAGCGCTCACATTGTTTTTTGCTTCCTCTTTCATTTTCATTTCCAAATCCGGCTCGCTCCCGGCTACGTGTCCTTTGGACCCTTTGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTTCAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGTCTGTTTTCTTCAAAGAATACGCCCTACCTTACCACTTGACTAGTAAGGGAAAAGCCCTTTACTCAAATAAATAGTTAGGGCTTTCTTTTTTCGCTTGTTCGTCAAGCTTTCGAGCAGCTCTTTCAACTGCGTCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAAGATAGGCCGGTCAAACAAAAACAAGGCGCAACGGGCTCTCCCTCCGCTCCTAGTCACTAAGTTGTGCTATTCTGTCCCGGGGGGGGACTCCACCAAGAGGTTCTTTCTCTCACGTAATTTCGCCCGTTCCACTTCTGTGCCGGAGGAAATGGGATTCGAACCCATGATACAATCTTCTTGTATGTCGATTTAGCAAACCAATGCCTTTAGCCACTCAGCCATACCTCCAACTTGTTGATCGGAATTTGAGCCCTTCGGGCTATCTGATCCGATCAACTGCGTAAGCCGTAGCGCGCTAGCGCTAGCGCGCGTACTCTTCCTCGAGATATATGAGCGAGACTCTATACAGATCTATGGATCTCCCCAGCATCAAAGCGAGACTCCATCCAAATCTGCCACTCGTTTGGCGACGCCTTCTTTTCTATGAACACCACCACTGAATGATGAACTTTGCCAGTCTTCGCCTCCGACCCGACCTGGAGAGAACACAGGGTAAGGGCTTTGCCCGCCTGAATAGAATTCATATCTCCTCGTCTGGTCGAGAAGGGAGAAAGCCCGGGGAACAGGACGTGACTCTTCTATTACATTACGGAGGAGTCAATTCTCGTCATGATCGATCCATGTCCTACCGTAGTGCCCGGAGAACCAGGCTTGCTTAG

mRNA sequence

ATGTATTTCTCATTCGACATTCTCTCTTACCAAGCTCTCGTACTCGCCAGGGTTGAGGAGGCAGAAAGGGTCTTATCTCTTTCATTGGAGCACATTGATGCCGAAGGAGTCTTCGGAACCGGTGGAGAGGCTATGATGATTGAAGGCTATTCAAATAGCATGACTGATACCACAAAGAAAGGGTGTGCGCGTTCGCCTGCCTTCCTGACCACGGATAGGCTACGGGGCTTTGCACTTCGGCCCCTGAGAATACCACATCAAGCTTTCGAGCAGCTCTTTCAACTGCGTCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAAGATAGGCCGGTCAAACAAAAACAAGGCGCAACGGGCTCTCCCTCCGCTCCTAGTCACTAAGTTGTGCTATTCTGTCCCGGGGGGGGACTCCACCAAGAGCAAACCAATGCCTTTAGCCACTCAGCCATACCTCCAACTTGTTGATCGGAATTTGAGCCCTTCGGGCTATCTGATCCGATCAACTGCTCTTCGCCTCCGACCCGACCTGGAGAGAACACAGGGTAAGGGCTTTGCCCGCCTGAATAGAATTCATATCTCCTCGTCTGGTCGAGAAGGGAGAAAGCCCGGGGAACAGGACGTGACTCTTCTATTACATTACGGAGGAGTCAATTCTCGTCATGATCGATCCATGTCCTACCGTAGTGCCCGGAGAACCAGGCTTGCTTAG

Coding sequence (CDS)

ATGTATTTCTCATTCGACATTCTCTCTTACCAAGCTCTCGTACTCGCCAGGGTTGAGGAGGCAGAAAGGGTCTTATCTCTTTCATTGGAGCACATTGATGCCGAAGGAGTCTTCGGAACCGGTGGAGAGGCTATGATGATTGAAGGCTATTCAAATAGCATGACTGATACCACAAAGAAAGGGTGTGCGCGTTCGCCTGCCTTCCTGACCACGGATAGGCTACGGGGCTTTGCACTTCGGCCCCTGAGAATACCACATCAAGCTTTCGAGCAGCTCTTTCAACTGCGTCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAAGATAGGCCGGTCAAACAAAAACAAGGCGCAACGGGCTCTCCCTCCGCTCCTAGTCACTAAGTTGTGCTATTCTGTCCCGGGGGGGGACTCCACCAAGAGCAAACCAATGCCTTTAGCCACTCAGCCATACCTCCAACTTGTTGATCGGAATTTGAGCCCTTCGGGCTATCTGATCCGATCAACTGCTCTTCGCCTCCGACCCGACCTGGAGAGAACACAGGGTAAGGGCTTTGCCCGCCTGAATAGAATTCATATCTCCTCGTCTGGTCGAGAAGGGAGAAAGCCCGGGGAACAGGACGTGACTCTTCTATTACATTACGGAGGAGTCAATTCTCGTCATGATCGATCCATGTCCTACCGTAGTGCCCGGAGAACCAGGCTTGCTTAG

Protein sequence

MYFSFDILSYQALVLARVEEAERVLSLSLEHIDAEGVFGTGGEAMMIEGYSNSMTDTTKKGCARSPAFLTTDRLRGFALRPLRIPHQAFEQLFQLRLISQHAQKPRAAQGLDNRRELASRKKIGRSNKNKAQRALPPLLVTKLCYSVPGGDSTKSKPMPLATQPYLQLVDRNLSPSGYLIRSTALRLRPDLERTQGKGFARLNRIHISSSGREGRKPGEQDVTLLLHYGGVNSRHDRSMSYRSARRTRLA
Homology
[Close]
BLAST of Moc09g15060 vs. NCBI nr
Match: GEW92419.1 (UBN2 domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 65.1 bits (157), Expect = 9.9e-07
Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 188 RPDLERTQGKGFARLNRIHISSSGREGRKPGEQDVTLLLHYGGVNSRHDRSMSYRSARRT 247
           RP       +   RLN IHIS    +G  P    VTLLLHYG V+SRH RSMSYRSARRT
Sbjct: 220 RPGENTWSSQALTRLNGIHISFV--KGESPWNWTVTLLLHYGEVHSRHGRSMSYRSARRT 279

Query: 248 RLA 251
           RLA
Sbjct: 280 RLA 280

[Close]
BLAST of Moc09g15060 vs. NCBI nr
Match: GEY82402.1 (hypothetical protein GlmaxMp02, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-06
Identity = 36/63 (57.14%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 188 RPDLERTQGKGFARLNRIHISSSGREGRKPGEQDVTLLLHYGGVNSRHDRSMSYRSARRT 247
           RP       +   RLN IHIS    +G  P    VTLLLHYG V+SRH RS SYRSARRT
Sbjct: 156 RPGENTRSSQALTRLNGIHISYV--KGESPWNWTVTLLLHYGEVHSRHGRSTSYRSARRT 215

Query: 248 RLA 251
           RLA
Sbjct: 216 RLA 216

[Close]
BLAST of Moc09g15060 vs. NCBI nr
Match: YP_009526579.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54338.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-05
Identity = 52/128 (40.62%), Postives = 58/128 (45.31%), Query Frame = 0 

Query: 153 TKSKPMPLAT------QPYLQLVDRNLSPSGYLIRST-ALRLRPDLERTQGKGFARLNRI 212
           T  +PM L T      Q  L LV     PS Y  RST ++  R +L    G   AR N I
Sbjct: 467 TGFEPMALCTQNRCADQTALHLVS---PPSAY--RSTRSMNTRTELAHPFGHRDARTNPI 526

Query: 213 HISSSGR-----------------------EGRKPGEQDVTLLLHYGGVNSRHDRSMSYR 251
             S   R                       +G  PG   VTLLLHYG V+ RHDRS SYR
Sbjct: 527 FASDPTRREHRVKPSPYPPELNSYLLRLVEKGESPGNWTVTLLLHYGEVHFRHDRSTSYR 586

[Close]
BLAST of Moc09g15060 vs. NCBI nr
Match: GEZ92139.1 (DNA-directed RNA polymerase subunit beta, chloroplastic [Tanacetum cinerariifolium])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-04
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 188 RPDLERTQGKGFARLNRIHISSSGREGRKPGEQDVTLLLHYGGVNSRHDRSMSYRSARRT 247
           RP       +   RLN IHIS    +G  P    VTLLLHY  V+SRH RS SYRSA+R 
Sbjct: 213 RPGKYTGSSQALTRLNGIHISF--MKGESPWNWTVTLLLHYREVHSRHGRSTSYRSAQRI 272

Query: 248 RLA 251
           RLA
Sbjct: 273 RLA 273

[Close]
BLAST of Moc09g15060 vs. ExPASy TrEMBL
Match: A0A4D8YGR2 (Ribulose bisphosphate carboxylase large chain OS=Salvia splendens OX=180675 GN=Saspl_047308 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.2e-07
Identity = 47/109 (43.12%), Postives = 53/109 (48.62%), Query Frame = 0 

Query: 93  FQLRLISQHAQKPRAAQGLDNRRELASRKKIGRSNKNKAQ-------------------- 152
           F  RLI QHAQ+PRA QGLD RRELA RKKIGRS KNKAQ                    
Sbjct: 603 FNCRLIPQHAQEPRAVQGLDGRRELAYRKKIGRSKKNKAQLLRILVSSAIQGTGLNQEQT 662

Query: 153 -----RALPPLLVTKLCYSVPGGDSTKSKPMPLATQPY-LQLVDRNLSP 176
                 A+PP        S P  D+ K  P P     Y L+LV++  SP
Sbjct: 663 NALSHSAIPPSFFA----SDPRKDTVKPSPYPPEWNSYLLRLVEKGESP 707

[Close]
BLAST of Moc09g15060 vs. ExPASy TrEMBL
Match: A0A385G2C0 (Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=orf110b PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 52/128 (40.62%), Postives = 58/128 (45.31%), Query Frame = 0 

Query: 153 TKSKPMPLAT------QPYLQLVDRNLSPSGYLIRST-ALRLRPDLERTQGKGFARLNRI 212
           T  +PM L T      Q  L LV     PS Y  RST ++  R +L    G   AR N I
Sbjct: 467 TGFEPMALCTQNRCADQTALHLVS---PPSAY--RSTRSMNTRTELAHPFGHRDARTNPI 526

Query: 213 HISSSGR-----------------------EGRKPGEQDVTLLLHYGGVNSRHDRSMSYR 251
             S   R                       +G  PG   VTLLLHYG V+ RHDRS SYR
Sbjct: 527 FASDPTRREHRVKPSPYPPELNSYLLRLVEKGESPGNWTVTLLLHYGEVHFRHDRSTSYR 586

[Close]
BLAST of Moc09g15060 vs. ExPASy TrEMBL
Match: A0A7J0DA55 (Elongation factor G, putative OS=Actinidia rufa OX=165716 GN=Acr_00g0013380 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-04
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 97  LISQHAQKPRAAQGLDNRRELASRKKIGRSNKNKAQRALPPLLVTKLCYSVPGGDSTK 155
           L S   Q+PRA Q L  RRELA RKKIGRSNKNKAQRAL  + ++    S   G STK
Sbjct: 479 LTSASHQEPRAVQSLPGRRELAYRKKIGRSNKNKAQRALRSVSLSSAILS--SGGSTK 534

The following BLAST results are available for this feature:
BLAST of Moc09g15060 vs. NCBI nr
Match NameE-valueIdentityDescription
GEW92419.19.9e-0758.73UBN2 domain-containing protein [Tanacetum cinerariifolium][more]
GEY82402.13.8e-0657.14hypothetical protein GlmaxMp02, mitochondrial [Tanacetum cinerariifolium][more]
YP_009526579.15.5e-0540.63hypothetical protein [Ammopiptanthus mongolicus] >AXV54338.1 hypothetical protei... [more]
GEZ92139.16.0e-0452.38DNA-directed RNA polymerase subunit beta, chloroplastic [Tanacetum cinerariifoli... [more]
BLAST of Moc09g15060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g15060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4D8YGR28.2e-0743.12Ribulose bisphosphate carboxylase large chain OS=Salvia splendens OX=180675 GN=S... [more]
A0A385G2C02.6e-0540.63Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=orf110b PE=4 S... [more]
A0A7J0DA555.0e-0458.62Elongation factor G, putative OS=Actinidia rufa OX=165716 GN=Acr_00g0013380 PE=4... [more]
BLAST of Moc09g15060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g15060.1Moc09g15060.1mRNA