Moc09g14640 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g14640
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag protease polyprotein
Locationchr9: 12589538 .. 12590447 (+)
RNA-Seq ExpressionMoc09g14640
SyntenyMoc09g14640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCACGTAAAAGAATGTCTGTGAGACGGGGTGGGCTAGATAGGGATGTTGACCCTGAGACAATAGAGTGGACAGTAAATAACCAAACTTCAGGTCAGATAGAGAATCCACCAATGGTTCAAACTACTGATCAGACGGGAATTCCACCAGTGGTTCAACTTACTGGTCAGACGGGGAATCCACCAATGGGTCAAACTCCTGGACAAACGGGGAATCCACCAATTGGGTCAAACTTTTGGACAAGCAGAGCCTACTATAGCGACTTTGATGATGGAGACTTTATAAACACTTGTTCAAACTGCTGTCTCTAATCAAATAGTACAATTGACTCAGGATCGAGAGAGCATGTCAATAGAAGTTAAATATCTGTGAGATTTTAAGAAGTACGATGCTCGCCCTTTTGACGGACTATATGTAGATCCAGCGTTGGCAGACGCTTGGTTGTCGTCAATGGAGACCATTTTTTATTATATGAGGTGTCCGGATGAACAAAAAGTGCAGTATGCTATCTTTATGCTAAAAGATGATGCCCTTTTATGGTGGGAGTCTGCAGAAAGGTCTATTGATGTGGGTGGAGGCCCAATCACATGGTTGCAGTTTAAGGATGCTTTCTTCCTACAGTATTACCCAGCGATCACCCAGTTCAGGAAACAAGCGGAGTTTTTAAACCTAAAGCAAGGTAACAAATCAGTGGAAGAATTTGAGAGGGAATTCACAAAATTGTCTCGTTTTGCCCCTAAGCTAGTAGACACAGAGTCCAAGAAGACCGAACGATTCATAATGGGCCTAAAGGATGAGATTCAAGGCTTCGTGGCAGCTCTCTCTCCACCAGATTATGCTATAGCACTTCGAGCAGCTGCATTGATTGATAATTTATTCCTCCTCTTACTAATGGAGAAAATATAG

mRNA sequence

ATGCCTCCACGTAAAAGAATGTCTGTGAGACGGGGTGGGCTAGATAGGGATGTTGACCCTGAGACAATAGAGTGGACAGTAAATAACCAAACTTCAGGTCAGATAGAGAATCCACCAATGGTTCAAACTACTGATCAGACGGGAATTCCACCAGTGGTTCAACTTACTGGTCAGACGGGGAATCCACCAATGGGTCAAACTCCTGGACAAACGGGGAATCCACCAATTGGGTCAAACTTTTGGACAAGCAGAGCCTACTATAGCGACTTTGATGATGGAGACTTTATAAACACTTATCCAGCGTTGGCAGACGCTTGGTTGTCGTCAATGGAGACCATTTTTTATTATATGAGGTGTCCGGATGAACAAAAAGTGCAGTATGCTATCTTTATGCTAAAAGATGATGCCCTTTTATGGTGGGAGTCTGCAGAAAGGTCTATTGATGTGGGTGGAGGCCCAATCACATGGTTGCAGTTTAAGGATGCTTTCTTCCTACAGTATTACCCAGCGATCACCCAGTTCAGGAAACAAGCGGAGTTTTTAAACCTAAAGCAAGGTAACAAATCAGTGGAAGAATTTGAGAGGGAATTCACAAAATTGTCTCGTTTTGCCCCTAAGCTAGTAGACACAGAGTCCAAGAAGACCGAACGATTCATAATGGGCCTAAAGGATGAGATTCAAGGCTTCGTGGCAGCTCTCTCTCCACCAGATTATGCTATAGCACTTCGAGCAGCTGCATTGATTGATAATTTATTCCTCCTCTTACTAATGGAGAAAATATAG

Coding sequence (CDS)

ATGCCTCCACGTAAAAGAATGTCTGTGAGACGGGGTGGGCTAGATAGGGATGTTGACCCTGAGACAATAGAGTGGACAGTAAATAACCAAACTTCAGGTCAGATAGAGAATCCACCAATGGTTCAAACTACTGATCAGACGGGAATTCCACCAGTGGTTCAACTTACTGGTCAGACGGGGAATCCACCAATGGGTCAAACTCCTGGACAAACGGGGAATCCACCAATTGGGTCAAACTTTTGGACAAGCAGAGCCTACTATAGCGACTTTGATGATGGAGACTTTATAAACACTTATCCAGCGTTGGCAGACGCTTGGTTGTCGTCAATGGAGACCATTTTTTATTATATGAGGTGTCCGGATGAACAAAAAGTGCAGTATGCTATCTTTATGCTAAAAGATGATGCCCTTTTATGGTGGGAGTCTGCAGAAAGGTCTATTGATGTGGGTGGAGGCCCAATCACATGGTTGCAGTTTAAGGATGCTTTCTTCCTACAGTATTACCCAGCGATCACCCAGTTCAGGAAACAAGCGGAGTTTTTAAACCTAAAGCAAGGTAACAAATCAGTGGAAGAATTTGAGAGGGAATTCACAAAATTGTCTCGTTTTGCCCCTAAGCTAGTAGACACAGAGTCCAAGAAGACCGAACGATTCATAATGGGCCTAAAGGATGAGATTCAAGGCTTCGTGGCAGCTCTCTCTCCACCAGATTATGCTATAGCACTTCGAGCAGCTGCATTGATTGATAATTTATTCCTCCTCTTACTAATGGAGAAAATATAG

Protein sequence

MPPRKRMSVRRGGLDRDVDPETIEWTVNNQTSGQIENPPMVQTTDQTGIPPVVQLTGQTGNPPMGQTPGQTGNPPIGSNFWTSRAYYSDFDDGDFINTYPALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGPITWLQFKDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESKKTERFIMGLKDEIQGFVAALSPPDYAIALRAAALIDNLFLLLLMEKI
Homology
BLAST of Moc09g14640 vs. NCBI nr
Match: XP_022156662.1 (uncharacterized protein LOC111023512 [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-60
Identity = 118/157 (75.16%), Postives = 133/157 (84.71%), Query Frame = 0

Query: 94  DFINTYPALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGP 153
           D ++  P LA+AWLS METIF YMRC +EQKVQ  +FMLKDDA LWWES ER IDV GGP
Sbjct: 45  DGLSVDPMLAEAWLSLMETIFRYMRCLEEQKVQCDVFMLKDDAFLWWESTERPIDVSGGP 104

Query: 154 ITWLQFKDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESK 213
           +TWLQFK+AFF QYYPAIT +RKQ EFLNLKQ N+SVEE++REFTKLSRFAP+LVDTE+ 
Sbjct: 105 VTWLQFKEAFFQQYYPAITWYRKQVEFLNLKQDNRSVEEYDREFTKLSRFAPELVDTEAT 164

Query: 214 KTERFIMGLKDEIQGFVAALSPPDYAIALRAAALIDN 251
           K ERFI+ LKDE +GFVA LSPPDYA ALR AALIDN
Sbjct: 165 KCERFIIDLKDENKGFVATLSPPDYATALRTAALIDN 201

BLAST of Moc09g14640 vs. NCBI nr
Match: XP_038891712.1 (uncharacterized protein LOC120081110 [Benincasa hispida])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-40
Identity = 81/150 (54.00%), Postives = 111/150 (74.00%), Query Frame = 0

Query: 100 PALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGPITWLQF 159
           P  A+ W+S +ETIF YM+CP++QKVQ A+FML D A +WW+ AER + VGG P+TW QF
Sbjct: 66  PTNAELWISFIETIFRYMKCPEDQKVQCAVFMLSDKAQIWWQLAERMLGVGGDPVTWEQF 125

Query: 160 KDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESKKTERFI 219
           K+ F+ +Y+ A  ++ KQ EFL L+QG++SVEE+++EF  LSRFAP+LV TE+ + ERFI
Sbjct: 126 KERFYAKYFSANLRYNKQREFLELRQGHRSVEEYDQEFDALSRFAPELVATEAMRAERFI 185

Query: 220 MGLKDEIQGFVAALSPPDYAIALRAAALID 250
            GLK+ I+G V A  P  +  ALR AA +D
Sbjct: 186 QGLKESIRGIVQAFKPTTHVEALRLAAEVD 215

BLAST of Moc09g14640 vs. NCBI nr
Match: XP_038882311.1 (uncharacterized protein LOC120073551 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 8.7e-38
Identity = 88/166 (53.01%), Postives = 110/166 (66.27%), Query Frame = 0

Query: 84  RAYYSDFDDGDFINTYPALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESA 143
           R YY    DG   N  P  A+ WLSS+E IF++MRC +E K+Q A+FML  +A +WW S 
Sbjct: 15  RKYYPLSFDGALGN--PTKAEMWLSSIEMIFHFMRCLEEHKLQCAVFMLTGNAKIWWRSV 74

Query: 144 ERSIDVGGGPITWLQFKDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRF 203
           E+ ID GG   TW QFK+ F+ +Y+ A T + KQAEFLN KQG  SVEE+E++F KLS F
Sbjct: 75  EKMIDTGGKLATWEQFKECFYEKYFSANTWYNKQAEFLNFKQGVMSVEEYEQDFDKLSHF 134

Query: 204 APKLVDTESKKTERFIMGLKDEIQGFVAALSPPDYAIALRAAALID 250
           APKLV TE+ +T  FI GLK  ++G V AL    YA AL AA  ID
Sbjct: 135 APKLVATETIRTNSFIQGLKSRLRGMVHALELKTYAAALWAAVRID 178

BLAST of Moc09g14640 vs. NCBI nr
Match: XP_038885815.1 (uncharacterized protein LOC120076109 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 8.7e-38
Identity = 83/150 (55.33%), Postives = 108/150 (72.00%), Query Frame = 0

Query: 100 PALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGPITWLQF 159
           P  A+ WLSS+ETIF++MRCP+E K+Q AIFML  +A +WW S E+ ID GG    W QF
Sbjct: 19  PTKAEMWLSSIETIFHFMRCPEEHKLQCAIFMLTSNAKIWWLSVEKMIDTGGELAIWEQF 78

Query: 160 KDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESKKTERFI 219
           K+ F+ +Y+ A T++ KQAEFLNLKQG  SVE++E+EF KLSRF P+LV T++ +TERFI
Sbjct: 79  KERFYEKYFLANTRYNKQAEFLNLKQGVISVEKYEQEFDKLSRFTPELVATKAARTERFI 138

Query: 220 MGLKDEIQGFVAALSPPDYAIALRAAALID 250
             L+  ++G V AL    Y  ALRAA  ID
Sbjct: 139 QDLRSGLRGIVHALDLKTYVAALRAAIRID 168

BLAST of Moc09g14640 vs. NCBI nr
Match: XP_038895970.1 (uncharacterized protein LOC120084143 [Benincasa hispida])

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-37
Identity = 82/150 (54.67%), Postives = 105/150 (70.00%), Query Frame = 0

Query: 100 PALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGPITWLQF 159
           P     WLSS+ETIF++MRCP+E  +Q A+FML  +  +WW SAE+ ID+GG   TW +F
Sbjct: 29  PTKVKMWLSSIETIFHFMRCPEEHNLQCAVFMLIGNMKIWWRSAEKMIDIGGELATWEEF 88

Query: 160 KDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESKKTERFI 219
           K+ F+ +Y+ A T++ KQAEFLNL QG  SVEE+E+EF KLS F PKLV TE+ + ERFI
Sbjct: 89  KERFYEKYFSANTRYNKQAEFLNLMQGLMSVEEYEQEFDKLSLFTPKLVATEAARIERFI 148

Query: 220 MGLKDEIQGFVAALSPPDYAIALRAAALID 250
            GL+  +QG V AL    YA  LRAA  ID
Sbjct: 149 PGLRSGLQGMVHALDLKTYAATLRAAVRID 178

BLAST of Moc09g14640 vs. ExPASy TrEMBL
Match: A0A6J1DSJ6 (uncharacterized protein LOC111023512 OS=Momordica charantia OX=3673 GN=LOC111023512 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 7.9e-61
Identity = 118/157 (75.16%), Postives = 133/157 (84.71%), Query Frame = 0

Query: 94  DFINTYPALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGP 153
           D ++  P LA+AWLS METIF YMRC +EQKVQ  +FMLKDDA LWWES ER IDV GGP
Sbjct: 45  DGLSVDPMLAEAWLSLMETIFRYMRCLEEQKVQCDVFMLKDDAFLWWESTERPIDVSGGP 104

Query: 154 ITWLQFKDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESK 213
           +TWLQFK+AFF QYYPAIT +RKQ EFLNLKQ N+SVEE++REFTKLSRFAP+LVDTE+ 
Sbjct: 105 VTWLQFKEAFFQQYYPAITWYRKQVEFLNLKQDNRSVEEYDREFTKLSRFAPELVDTEAT 164

Query: 214 KTERFIMGLKDEIQGFVAALSPPDYAIALRAAALIDN 251
           K ERFI+ LKDE +GFVA LSPPDYA ALR AALIDN
Sbjct: 165 KCERFIIDLKDENKGFVATLSPPDYATALRTAALIDN 201

BLAST of Moc09g14640 vs. ExPASy TrEMBL
Match: A0A6J1EKD9 (uncharacterized protein LOC111435460 OS=Cucurbita moschata OX=3662 GN=LOC111435460 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.7e-35
Identity = 74/153 (48.37%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 100 PALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSI---DVGGGPITW 159
           P L ++W+ S+ETIF +M CP++QKV+ A FMLK +A  WW++A++++   D    PI W
Sbjct: 105 PVLVESWVESIETIFEHMNCPEDQKVKCASFMLKGEAHFWWKTAQQTLRKEDEDEEPICW 164

Query: 160 LQFKDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESKKTE 219
            + K AF  +YYPA+  +  +  F++LKQGN +VEE+E EFT+LSRFA + +DTE K+T 
Sbjct: 165 HEMKRAFIHKYYPAVNWYNNREAFVHLKQGNMTVEEYELEFTRLSRFALEYIDTEEKRTY 224

Query: 220 RFIMGLKDEIQGFVAALSPPDYAIALRAAALID 250
           +FI+GL+ EIQG VAA++   Y  AL AA+++D
Sbjct: 225 KFILGLRSEIQGKVAAIAATSYERALHAASMLD 257

BLAST of Moc09g14640 vs. ExPASy TrEMBL
Match: A0A5A7T7E7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00920 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-34
Identity = 71/144 (49.31%), Postives = 102/144 (70.83%), Query Frame = 0

Query: 100 PALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGPITWLQF 159
           P  A  WLSS+ETIF YM+CP++QKVQ AIFML D    WWE+ ER +      ITW QF
Sbjct: 66  PTRAQLWLSSLETIFRYMKCPEDQKVQCAIFMLTDRGTAWWETTERMLGGDVSQITWQQF 125

Query: 160 KDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESKKTERFI 219
           K++F+ +++PA  +  K+ EFLNL+QG+ +VE+++ EF  LSRFAP+++ TE+ + ++F+
Sbjct: 126 KESFYAKFFPASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFV 185

Query: 220 MGLKDEIQGFVAALSPPDYAIALR 244
            GL+ +IQG V A  P  +A ALR
Sbjct: 186 RGLRLDIQGLVRAFRPATHADALR 209

BLAST of Moc09g14640 vs. ExPASy TrEMBL
Match: A0A5A7VJF1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001680 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.7e-34
Identity = 78/162 (48.15%), Postives = 107/162 (66.05%), Query Frame = 0

Query: 84  RAYYSDFDDGDFINTYPALADAWLSSMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESA 143
           R Y S   DG   N  P  A  WL+S+ETIF YM+CP++QKVQ A+F L+D    WWE+A
Sbjct: 175 RKYNSKTFDGSMDN--PTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTAWWETA 234

Query: 144 ERSIDVGGGPITWLQFKDAFFLQYYPAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRF 203
           ER +      ITW QFK+ F+ +++ A  +  K  EFLNL+QG+ +VE+++ EF  LSRF
Sbjct: 235 ERMLGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRF 294

Query: 204 APKLVDTESKKTERFIMGLKDEIQGFVAALSPPDYAIALRAA 246
           AP +V  ES +TE+F+ GL+ ++QG V AL P  +A ALR A
Sbjct: 295 APDMVRDESARTEKFVRGLRLDLQGIVRALRPATHADALRIA 334

BLAST of Moc09g14640 vs. ExPASy TrEMBL
Match: A0A5D3E4V0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001880 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.7e-34
Identity = 83/197 (42.13%), Postives = 117/197 (59.39%), Query Frame = 0

Query: 49  IPPVVQLTGQTGNPPMGQTPGQTGNPPIGSNFWTSRAYYSDFDDGDFINTYPALADAWLS 108
           + P VQ   Q  NP     P Q        +    R Y     DG   +  P  A  WLS
Sbjct: 40  VQPEVQPVAQATNPTAPVVPDQLSAE--AKHLRDFRKYNPTTFDGSLED--PTRAQLWLS 99

Query: 109 SMETIFYYMRCPDEQKVQYAIFMLKDDALLWWESAERSIDVGGGPITWLQFKDAFFLQYY 168
           S+ETIF YM+CP++QKVQ A+FML D    WWE+ ER +    G ITW QFK++FF +++
Sbjct: 100 SLETIFRYMKCPEDQKVQCAVFMLTDRGTTWWETIERMLGGDVGQITWQQFKESFFAKFF 159

Query: 169 PAITQFRKQAEFLNLKQGNKSVEEFEREFTKLSRFAPKLVDTESKKTERFIMGLKDEIQG 228
            A  +  K+ EFLNL+Q + +VE+++ EF  LSRFAP+++ TE+ + ++F+ GL+ +IQG
Sbjct: 160 SASLRDAKRQEFLNLEQDDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRQDIQG 219

Query: 229 FVAALSPPDYAIALRAA 246
            V A  P  +A ALR A
Sbjct: 220 LVRAFRPTTHADALRLA 232

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156662.11.6e-6075.16uncharacterized protein LOC111023512 [Momordica charantia][more]
XP_038891712.11.4e-4054.00uncharacterized protein LOC120081110 [Benincasa hispida][more]
XP_038882311.18.7e-3853.01uncharacterized protein LOC120073551 [Benincasa hispida][more]
XP_038885815.18.7e-3855.33uncharacterized protein LOC120076109 [Benincasa hispida][more]
XP_038895970.11.1e-3754.67uncharacterized protein LOC120084143 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSJ67.9e-6175.16uncharacterized protein LOC111023512 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1EKD95.7e-3548.37uncharacterized protein LOC111435460 OS=Cucurbita moschata OX=3662 GN=LOC1114354... [more]
A0A5A7T7E72.8e-3449.31Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VJF13.7e-3448.15Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40... [more]
A0A5D3E4V03.7e-3442.13Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 127..224
e-value: 1.2E-18
score: 67.2
NoneNo IPR availablePANTHERPTHR34482:SF4POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATEDcoord: 88..231
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 88..231

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g14640.1Moc09g14640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity