Moc09g14400 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g14400
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr9: 12390056 .. 12391650 (+)
RNA-Seq ExpressionMoc09g14400
SyntenyMoc09g14400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTAGAATCGTCGAAAAACACCTCTGAAATATCGATCACAAATCAGCATATTCAGGTTATTAATCCTGGTAACAAGATCTCTACAGTCAAATTGACTGATGATAATTTCTTGTTGTGGCGATTGCACGTTCTGACTGCTCAAGGCCATGGACTGGAGGACTTCATCGATCCTGAAGGTCCAATTCCATCGGAAAATATCACTGTTGAAGGAGAACGTTCATCTTCATCAACTTAGAATCAGGAATATCTAAATTGGAAGCGACAACATAAATTGATTACATTGTGGCTTCTTGGATCTATGTCTAAAGAAGTATTATCTCAAATGCTTGAGTGTGAAACCTCAAAAAGAGATTTGGTCTGTTCTGAATAGTCTCTTTTCATCGAGAAACCTAGCTCGTGTTATGGAGTTAAAATCGAAGCTTGAAAACCTAAAGAAAGGGAGCCTCAGTCTAAAGGAGTATTTTGCAAAGGCAAAGCAAATTGTTGATGCCCTAACTGCTGCTAGTAAACCAATTTCGAAGACTGATCATATAATGCATCTATTAGCCGGTCTAGGAACCGAATTCGATTCAACTGTGTCGGTAATTTCTGCGCGTGTTGATCCTCCAACAATTCAAGAAACGTATTCATTACTACTTGCTCAAGAAGGAAGGAACGAGAGGAATGCTATCAATACTGAGGTATCACTACCATCAGTGAATTTAACAACTCAAGAACAATCGAAGAAGGGACATCAAGCTAATTCTACAGATACTAGAGGAAATTGGAACAATAACAGAGGAAGAAGAGGCAATCGATCAAACCGTGGGCGAAATTGGAATAACAATTTCAGAATTCAGTGTCAACTTTGCGGTCGATTTGGCCATACTGCCTCGAGGTGTTATCAACGCTTTGATCGGAGTTTTCAGGGCCCTCATTCGTCGGCTTATTCGTTCGGATTTCATCCGACCCCTTCGTATGGTTCAGCATCAAATCCTAATCAACCTCAGATGAATGCTTTTACTCTTTCTCAGGAGCTCAATCGGGACACTAACTGGTATCCAGATTCTGGTGCTTCACATCACGTCACAAATGATCTTGGAAATTTGTCTATTGGAGCTGAAAGTCATGGCAATAACAGAGTTCTTGTAGGCAACGACTCAGGTTTGAACGTTTCACATATTGGATCTACCTTTCTTAAATCTTCTTCTGCCCCTTCTAATATCTTTTTGCTAAATAATCTGCTCCATGTTCCTCAAATTACCAAAAATCTCATTAGTGTTAGTAAATTTGCAAAAGATAATAATGTTTACTTTGAGTTTCATTCCTCTAATTGTTTTGTGAAGGACCTTCAAACTGGCCAAATTCTACTCCAGGGCACAGGGCAAAGTTTCTGATGGGCTGTACACATTCTCTTTGGACAAGGCTAAGTCTTCTACATCATTCCCTTCCACCATTCTTTCTCATGGCTCTTCTTCTTCAACCATCACTCTTCAGGTTCTTCATACATTAGCTTCTCCTGCTACTTCTTTTCCATGTGATACTGATTCTGCTGAACAATTTACACCTTTCACACAATGTAAGCCTTCTGTTTTAGATATATGGCACTGA

mRNA sequence

ATGACGTTAGAATCGTCGAAAAACACCTCTGAAATATCGATCACAAATCAGCATATTCAGGTTATTAATCCTGGTAACAAGATCTCTACAGTCAAATTGACTGATGATAATTTCTTGTTGTGGCGATTGCACGTTCTGACTGCTCAAGGCCATGGACTGGAGGACTTCATCGATCCTGAAGCTCGTGTTATGGAGTTAAAATCGAAGCTTGAAAACCTAAAGAAAGGGAGCCTCAGTCTAAAGGAGTATTTTGCAAAGGCAAAGCAAATTGTTGATGCCCTAACTGCTGCTAGTAAACCAATTTCGAAGACTGATCATATAATGCATCTATTAGCCGGTCTAGGAACCGAATTCGATTCAACTGTGTCGGTAATTTCTGCGCGTGTTGATCCTCCAACAATTCAAGAAACGTATTCATTACTACTTGCTCAAGAAGGAAGGAACGAGAGGAATGCTATCAATACTGAGGTATCACTACCATCAGTGAATTTAACAACTCAAGAACAATCGAAGAAGGGACATCAAGCTAATTCTACAGATACTAGAGGAAATTGGAACAATAACAGAGGAAGAAGAGGCAATCGATCAAACCGTGGGCGAAATTGGAATAACAATTTCAGAATTCAGTGTCAACTTTGCGGTCGATTTGGCCATACTGCCTCGAGGTGTTATCAACGCTTTGATCGGAGTTTTCAGGGCCCTCATTCGTCGGCTTATTCGTTCGGATTTCATCCGACCCCTTCGTATGGTTCAGCATCAAATCCTAATCAACCTCAGATGAATGCTTTTACTCTTTCTCAGGAGCTCAATCGGGACACTAACTGGTATCCAGATTCTGGTGCTTCACATCACGTCACAAATGATCTTGGAAATTTGTCTATTGGAGCTGAAAGTCATGGCAATAACAGAGTTCTTGTAGGCAACGACTCAGGTTTGAACGGCAAAGTTTCTGATGGGCTGTACACATTCTCTTTGGACAAGGCTAAGTCTTCTACATCATTCCCTTCCACCATTCTTTCTCATGGCTCTTCTTCTTCAACCATCACTCTTCAGGTTCTTCATACATTAGCTTCTCCTGCTACTTCTTTTCCATGTGATACTGATTCTGCTGAACAATTTACACCTTTCACACAATGTAAGCCTTCTGTTTTAGATATATGGCACTGA

Coding sequence (CDS)

ATGACGTTAGAATCGTCGAAAAACACCTCTGAAATATCGATCACAAATCAGCATATTCAGGTTATTAATCCTGGTAACAAGATCTCTACAGTCAAATTGACTGATGATAATTTCTTGTTGTGGCGATTGCACGTTCTGACTGCTCAAGGCCATGGACTGGAGGACTTCATCGATCCTGAAGCTCGTGTTATGGAGTTAAAATCGAAGCTTGAAAACCTAAAGAAAGGGAGCCTCAGTCTAAAGGAGTATTTTGCAAAGGCAAAGCAAATTGTTGATGCCCTAACTGCTGCTAGTAAACCAATTTCGAAGACTGATCATATAATGCATCTATTAGCCGGTCTAGGAACCGAATTCGATTCAACTGTGTCGGTAATTTCTGCGCGTGTTGATCCTCCAACAATTCAAGAAACGTATTCATTACTACTTGCTCAAGAAGGAAGGAACGAGAGGAATGCTATCAATACTGAGGTATCACTACCATCAGTGAATTTAACAACTCAAGAACAATCGAAGAAGGGACATCAAGCTAATTCTACAGATACTAGAGGAAATTGGAACAATAACAGAGGAAGAAGAGGCAATCGATCAAACCGTGGGCGAAATTGGAATAACAATTTCAGAATTCAGTGTCAACTTTGCGGTCGATTTGGCCATACTGCCTCGAGGTGTTATCAACGCTTTGATCGGAGTTTTCAGGGCCCTCATTCGTCGGCTTATTCGTTCGGATTTCATCCGACCCCTTCGTATGGTTCAGCATCAAATCCTAATCAACCTCAGATGAATGCTTTTACTCTTTCTCAGGAGCTCAATCGGGACACTAACTGGTATCCAGATTCTGGTGCTTCACATCACGTCACAAATGATCTTGGAAATTTGTCTATTGGAGCTGAAAGTCATGGCAATAACAGAGTTCTTGTAGGCAACGACTCAGGTTTGAACGGCAAAGTTTCTGATGGGCTGTACACATTCTCTTTGGACAAGGCTAAGTCTTCTACATCATTCCCTTCCACCATTCTTTCTCATGGCTCTTCTTCTTCAACCATCACTCTTCAGGTTCTTCATACATTAGCTTCTCCTGCTACTTCTTTTCCATGTGATACTGATTCTGCTGAACAATTTACACCTTTCACACAATGTAAGCCTTCTGTTTTAGATATATGGCACTGA

Protein sequence

MTLESSKNTSEISITNQHIQVINPGNKISTVKLTDDNFLLWRLHVLTAQGHGLEDFIDPEARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLLAGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSKKGHQANSTDTRGNWNNNRGRRGNRSNRGRNWNNNFRIQCQLCGRFGHTASRCYQRFDRSFQGPHSSAYSFGFHPTPSYGSASNPNQPQMNAFTLSQELNRDTNWYPDSGASHHVTNDLGNLSIGAESHGNNRVLVGNDSGLNGKVSDGLYTFSLDKAKSSTSFPSTILSHGSSSSTITLQVLHTLASPATSFPCDTDSAEQFTPFTQCKPSVLDIWH
Homology
BLAST of Moc09g14400 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-65
Identity = 169/405 (41.73%), Postives = 222/405 (54.81%), Query Frame = 0

Query: 5   SSKNTSEISITNQHIQVINPGNKISTVKLTDDNFLLWRLHVLTA-QGHGLEDFIDPE--- 64
           SS   S+ +   Q  + INPG+K+S V+L DDN LLW+  + TA QG+GLE +ID     
Sbjct: 5   SSIRNSDAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDT 64

Query: 65  ------------------------------------------------------------ 124
                                                                       
Sbjct: 65  PAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWT 124

Query: 125 -----------ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMH 184
                      ARVM+LK KLEN KKG+LSLK+YF K K +VD+L  A K +S  DHIMH
Sbjct: 125 VLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMH 184

Query: 185 LLAGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQ 244
           +LAGLG EFD+ +SVI+AR  P T+QE  SLLL QEGRNERN IN++ SLPSVNLT  + 
Sbjct: 185 ILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNERNLINSDGSLPSVNLTLNDS 244

Query: 245 SKKG--HQANSTDTRGNWNNNRGR-RGNRSNRGRNWNNNFRIQCQLCGRFGHTASRCYQR 304
           SKK   HQ+   +   +  + RGR   NRS+  RNW  N + QCQ+CGRFGHTA RCY R
Sbjct: 245 SKKNNLHQSKCFNPHQSNYSQRGRGTNNRSSNRRNWTGNNKPQCQICGRFGHTALRCYMR 304

Query: 305 FDRSFQGPHSSAYSF---GFHP-----TPSYGSASNP------------NQPQMNAFTLS 312
           F+R+F GP+ +  +F   GF       TPS+ + S+P            +  QM A  ++
Sbjct: 305 FERNFLGPNMNPNTFSPAGFSSGFPLNTPSHNAFSSPATQNGNFSMNSASPSQMQALMVA 364

BLAST of Moc09g14400 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 1.1e-57
Identity = 137/270 (50.74%), Postives = 180/270 (66.67%), Query Frame = 0

Query: 61  ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLLAGLGTEFDS 120
           ARVM+LKSKLEN+KKG+L LK+YF K K +VD+L AA K ++  DHIMH+L GL +EF+S
Sbjct: 46  ARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFES 105

Query: 121 TVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSKKGHQANSTD 180
           TVSVISAR    T+QE YSLLL+ EGRNERN+INT+ +LPSVNLT  +Q+K  + A S D
Sbjct: 106 TVSVISARTQTQTLQEVYSLLLSHEGRNERNSINTDGTLPSVNLT--QQTKNSNSAQSID 165

Query: 181 -TRGNWNNNRGRRGNRSNRGRNWNNNFRIQCQLCGRFGHTASRCYQRFDRSFQGPHSSA- 240
             R    NNR +     N  RNWN+N R QCQ+ G+FGHTA RCY RF+++F GP+  + 
Sbjct: 166 GQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSH 225

Query: 241 ----YSFGFHPTPSYGSASNPNQPQ-------------MNAFTLSQELNRDTNWYPDSGA 300
               +S G + + +    +  NQ Q             M AF   Q+ NRDTNWYPDSGA
Sbjct: 226 MQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSHMAAFLAQQDFNRDTNWYPDSGA 285

Query: 301 SHHVTNDLGNLSIGAESHGNNRVLVGNDSG 312
           ++HVT++  NL+   E  G+N+V +GN +G
Sbjct: 286 TNHVTSNFNNLATSTEYTGDNQVRIGNGTG 313

BLAST of Moc09g14400 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 233.0 bits (593), Expect = 4.3e-57
Identity = 136/267 (50.94%), Postives = 178/267 (66.67%), Query Frame = 0

Query: 61  ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLLAGLGTEFDS 120
           ARVM+LKSKLEN+KKG+L LK+YF K K +VD+L AA K ++  DHIMH+L GL +EF+S
Sbjct: 46  ARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFES 105

Query: 121 TVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSKKGHQANSTD 180
           TVSVISAR    T+QE YSLLL+ EGRNERN+INT+ +LPSVNLT  +Q+K  + A S D
Sbjct: 106 TVSVISARTQTQTLQEVYSLLLSHEGRNERNSINTDGTLPSVNLT--QQTKNSNSAQSID 165

Query: 181 -TRGNWNNNRGRRGNRSNRGRNWNNNFRIQCQLCGRFGHTASRCYQRFDRSFQGPHSSA- 240
             R    NNR +     N  RNWN+N R QCQ+ G+FGHTA RCY RF+++F GP+  + 
Sbjct: 166 GQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSH 225

Query: 241 ----YSFGFHPTPSYGSASNPNQPQ-------------MNAFTLSQELNRDTNWYPDSGA 300
               +S G + + +    +  NQ Q             M AF   Q+ NRDTNWYPDSGA
Sbjct: 226 MQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSHMAAFLAQQDFNRDTNWYPDSGA 285

Query: 301 SHHVTNDLGNLSIGAESHGNNRVLVGN 309
           ++HVT++  NL+   E  G+N+V +GN
Sbjct: 286 TNHVTSNFNNLATSTEYTGDNQVRIGN 310

BLAST of Moc09g14400 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-52
Identity = 152/387 (39.28%), Postives = 210/387 (54.26%), Query Frame = 0

Query: 7   KNTSEISITNQHIQVINPGNKISTVKLTDDNFLLWRLHVLTA-QGHGLEDFIDPE----- 66
           +NT   S  N   Q+   GNKIS VKL DD FLLW+  +LTA + + LE+F++ E     
Sbjct: 11  ENTEASSPIN---QIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPS 70

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 71  KYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETL 130

Query: 127 ---------ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLL 186
                    A+ M+ K+KL N+KKGS+ LKEYF K  Q VDAL + +KP+S  DHI+++L
Sbjct: 131 QGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYIL 190

Query: 187 AGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSK 246
           AGLG+++ S +SVISAR D P++QE  SLLL QE +NE   I +E +LPSVN+ TQ  ++
Sbjct: 191 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLI-SETALPSVNIVTQ-TTE 250

Query: 247 KGHQANSTDTRGNWNNN-----RGRRGN-RSNRGRNWNNNFRIQCQLCGRFGHTASRCYQ 306
           KG ++     + N++NN     RG RGN RSNRGR  N N + QCQ+C + G++A RC+ 
Sbjct: 251 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN-KPQCQICAKLGYSADRCFF 310

Query: 307 RFDRSFQGPHSSAYSFGFHPTPSYGSASNPNQPQMNAFTLSQELNRDTNWYPDSGASHHV 313
           R+       +SS YS   H T SY + +  N PQM+A   + +LN D+NWYPDSGA++H+
Sbjct: 311 RYT---PRSNSSGYSPNSHNT-SYTNMN--NHPQMSAMVAALDLNIDSNWYPDSGATNHL 370

BLAST of Moc09g14400 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-52
Identity = 152/387 (39.28%), Postives = 210/387 (54.26%), Query Frame = 0

Query: 7   KNTSEISITNQHIQVINPGNKISTVKLTDDNFLLWRLHVLTA-QGHGLEDFIDPE----- 66
           +NT   S  N   Q+   GNKIS VKL DD FLLW+  +LTA + + LE+F++ E     
Sbjct: 11  ENTEASSPIN---QIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPS 70

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 71  KYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETL 130

Query: 127 ---------ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLL 186
                    A+ M+ K+KL N+KKGS+ LKEYF K  Q VDAL + +KP+S  DHI+++L
Sbjct: 131 QGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYIL 190

Query: 187 AGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSK 246
           AGLG+++ S +SVISAR D P++QE  SLLL QE +NE   I +E +LPSVN+ TQ  ++
Sbjct: 191 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLI-SETALPSVNIVTQ-TTE 250

Query: 247 KGHQANSTDTRGNWNNN-----RGRRGN-RSNRGRNWNNNFRIQCQLCGRFGHTASRCYQ 306
           KG ++     + N++NN     RG RGN RSNRGR  N N + QCQ+C + G++A RC+ 
Sbjct: 251 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN-KPQCQICAKLGYSADRCFF 310

Query: 307 RFDRSFQGPHSSAYSFGFHPTPSYGSASNPNQPQMNAFTLSQELNRDTNWYPDSGASHHV 313
           R+       +SS YS   H T SY + +  N PQM+A   + +LN D+NWYPDSGA++H+
Sbjct: 311 RYT---PRSNSSGYSPNSHNT-SYTNMN--NHPQMSAMVAALDLNIDSNWYPDSGATNHL 370

BLAST of Moc09g14400 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-12
Identity = 73/257 (28.40%), Postives = 122/257 (47.47%), Query Frame = 0

Query: 63  VMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLLAGLGTEFDSTV 122
           V +L+++L+   KG+ ++ +Y        D L    KP+   + +  +L  L  E+   +
Sbjct: 125 VTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVI 184

Query: 123 SVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSV-------NLTTQEQSKKGHQ 182
             I+A+  PPT+ E +  LL  E  ++  A+++   +P         N TT   +  G++
Sbjct: 185 DQIAAKDTPPTLTEIHERLLNHE--SKILAVSSATVIPITANAVSHRNTTTTNNNNNGNR 244

Query: 183 ANSTDTRGNWNNNRGRRGNRSNRGRNWNNN--FRIQCQLCGRFGHTASRCYQRFDRSFQG 242
            N  D R N NN++  + + +N   N N +  +  +CQ+CG  GH+A RC Q   + F  
Sbjct: 245 NNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQL--QHFLS 304

Query: 243 PHSSAYSFGFHPTPSYGSASNPNQPQMNAFTLSQELNRDTNWYPDSGASHHVTNDLGNLS 302
             +S       P+P       P QP+ N    S       NW  DSGA+HH+T+D  NLS
Sbjct: 305 SVNSQQP----PSP-----FTPWQPRANLALGSP--YSSNNWLLDSGATHHITSDFNNLS 364

Query: 303 IGAESHGNNRVLVGNDS 311
           +     G + V+V + S
Sbjct: 365 LHQPYTGGDDVMVADGS 366

BLAST of Moc09g14400 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-08
Identity = 61/226 (26.99%), Postives = 104/226 (46.02%), Query Frame = 0

Query: 92  DALTAASKPISKTDHIMHLLAGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERN 151
           D L    KP+   + +  +L  L  ++   +  I+A+  PP++ E +  L+ +E  ++  
Sbjct: 135 DQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRE--SKLL 194

Query: 152 AINTEVSLP-SVNLTTQEQSKKGHQANSTDTRGNWNNNRGRRGN--RSNRGRNWNNN--- 211
           A+N+   +P + N+ T   +      N+     N+NNN  R  +   S+ G   +N    
Sbjct: 195 ALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPK 254

Query: 212 -FRIQCQLCGRFGHTASRCYQRFDRSFQGPHSSAYSFGFHPTPSYGSASNPNQPQMNAFT 271
            +  +CQ+C   GH+A RC Q     FQ   +   S          S   P QP+ N   
Sbjct: 255 PYLGRCQICSVQGHSAKRCPQL--HQFQSTTNQQQS---------TSPFTPWQPRAN-LA 314

Query: 272 LSQELNRDTNWYPDSGASHHVTNDLGNLSIGAESHGNNRVLVGNDS 311
           ++   N + NW  DSGA+HH+T+D  NLS      G + V++ + S
Sbjct: 315 VNSPYNAN-NWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGS 345

BLAST of Moc09g14400 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 169/405 (41.73%), Postives = 222/405 (54.81%), Query Frame = 0

Query: 5   SSKNTSEISITNQHIQVINPGNKISTVKLTDDNFLLWRLHVLTA-QGHGLEDFIDPE--- 64
           SS   S+ +   Q  + INPG+K+S V+L DDN LLW+  + TA QG+GLE +ID     
Sbjct: 5   SSIRNSDAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDT 64

Query: 65  ------------------------------------------------------------ 124
                                                                       
Sbjct: 65  PAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWT 124

Query: 125 -----------ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMH 184
                      ARVM+LK KLEN KKG+LSLK+YF K K +VD+L  A K +S  DHIMH
Sbjct: 125 VLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMH 184

Query: 185 LLAGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQ 244
           +LAGLG EFD+ +SVI+AR  P T+QE  SLLL QEGRNERN IN++ SLPSVNLT  + 
Sbjct: 185 ILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNERNLINSDGSLPSVNLTLNDS 244

Query: 245 SKKG--HQANSTDTRGNWNNNRGR-RGNRSNRGRNWNNNFRIQCQLCGRFGHTASRCYQR 304
           SKK   HQ+   +   +  + RGR   NRS+  RNW  N + QCQ+CGRFGHTA RCY R
Sbjct: 245 SKKNNLHQSKCFNPHQSNYSQRGRGTNNRSSNRRNWTGNNKPQCQICGRFGHTALRCYMR 304

Query: 305 FDRSFQGPHSSAYSF---GFHP-----TPSYGSASNP------------NQPQMNAFTLS 312
           F+R+F GP+ +  +F   GF       TPS+ + S+P            +  QM A  ++
Sbjct: 305 FERNFLGPNMNPNTFSPAGFSSGFPLNTPSHNAFSSPATQNGNFSMNSASPSQMQALMVA 364

BLAST of Moc09g14400 vs. ExPASy TrEMBL
Match: A0A6J1C6N9 (dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.4e-58
Identity = 137/270 (50.74%), Postives = 180/270 (66.67%), Query Frame = 0

Query: 61  ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLLAGLGTEFDS 120
           ARVM+LKSKLEN+KKG+L LK+YF K K +VD+L AA K ++  DHIMH+L GL +EF+S
Sbjct: 46  ARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFES 105

Query: 121 TVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSKKGHQANSTD 180
           TVSVISAR    T+QE YSLLL+ EGRNERN+INT+ +LPSVNLT  +Q+K  + A S D
Sbjct: 106 TVSVISARTQTQTLQEVYSLLLSHEGRNERNSINTDGTLPSVNLT--QQTKNSNSAQSID 165

Query: 181 -TRGNWNNNRGRRGNRSNRGRNWNNNFRIQCQLCGRFGHTASRCYQRFDRSFQGPHSSA- 240
             R    NNR +     N  RNWN+N R QCQ+ G+FGHTA RCY RF+++F GP+  + 
Sbjct: 166 GQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSH 225

Query: 241 ----YSFGFHPTPSYGSASNPNQPQ-------------MNAFTLSQELNRDTNWYPDSGA 300
               +S G + + +    +  NQ Q             M AF   Q+ NRDTNWYPDSGA
Sbjct: 226 MQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSHMAAFLAQQDFNRDTNWYPDSGA 285

Query: 301 SHHVTNDLGNLSIGAESHGNNRVLVGNDSG 312
           ++HVT++  NL+   E  G+N+V +GN +G
Sbjct: 286 TNHVTSNFNNLATSTEYTGDNQVRIGNGTG 313

BLAST of Moc09g14400 vs. ExPASy TrEMBL
Match: A0A6J1C8R2 (dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.1e-57
Identity = 136/267 (50.94%), Postives = 178/267 (66.67%), Query Frame = 0

Query: 61  ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLLAGLGTEFDS 120
           ARVM+LKSKLEN+KKG+L LK+YF K K +VD+L AA K ++  DHIMH+L GL +EF+S
Sbjct: 46  ARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFES 105

Query: 121 TVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSKKGHQANSTD 180
           TVSVISAR    T+QE YSLLL+ EGRNERN+INT+ +LPSVNLT  +Q+K  + A S D
Sbjct: 106 TVSVISARTQTQTLQEVYSLLLSHEGRNERNSINTDGTLPSVNLT--QQTKNSNSAQSID 165

Query: 181 -TRGNWNNNRGRRGNRSNRGRNWNNNFRIQCQLCGRFGHTASRCYQRFDRSFQGPHSSA- 240
             R    NNR +     N  RNWN+N R QCQ+ G+FGHTA RCY RF+++F GP+  + 
Sbjct: 166 GQRPYMQNNRSKNSGNPNFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSH 225

Query: 241 ----YSFGFHPTPSYGSASNPNQPQ-------------MNAFTLSQELNRDTNWYPDSGA 300
               +S G + + +    +  NQ Q             M AF   Q+ NRDTNWYPDSGA
Sbjct: 226 MQHKFSGGSNSSINSNMTAFGNQQQAFTNGFQPNSNSHMAAFLAQQDFNRDTNWYPDSGA 285

Query: 301 SHHVTNDLGNLSIGAESHGNNRVLVGN 309
           ++HVT++  NL+   E  G+N+V +GN
Sbjct: 286 TNHVTSNFNNLATSTEYTGDNQVRIGN 310

BLAST of Moc09g14400 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.9e-53
Identity = 152/387 (39.28%), Postives = 210/387 (54.26%), Query Frame = 0

Query: 7   KNTSEISITNQHIQVINPGNKISTVKLTDDNFLLWRLHVLTA-QGHGLEDFIDPE----- 66
           +NT   S  N   Q+   GNKIS VKL DD FLLW+  +LTA + + LE+F++ E     
Sbjct: 11  ENTEASSPIN---QIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPS 70

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 71  KYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETL 130

Query: 127 ---------ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLL 186
                    A+ M+ K+KL N+KKGS+ LKEYF K  Q VDAL + +KP+S  DHI+++L
Sbjct: 131 QGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYIL 190

Query: 187 AGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSK 246
           AGLG+++ S +SVISAR D P++QE  SLLL QE +NE   I +E +LPSVN+ TQ  ++
Sbjct: 191 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLI-SETALPSVNIVTQ-TTE 250

Query: 247 KGHQANSTDTRGNWNNN-----RGRRGN-RSNRGRNWNNNFRIQCQLCGRFGHTASRCYQ 306
           KG ++     + N++NN     RG RGN RSNRGR  N N + QCQ+C + G++A RC+ 
Sbjct: 251 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN-KPQCQICAKLGYSADRCFF 310

Query: 307 RFDRSFQGPHSSAYSFGFHPTPSYGSASNPNQPQMNAFTLSQELNRDTNWYPDSGASHHV 313
           R+       +SS YS   H T SY + +  N PQM+A   + +LN D+NWYPDSGA++H+
Sbjct: 311 RYT---PRSNSSGYSPNSHNT-SYTNMN--NHPQMSAMVAALDLNIDSNWYPDSGATNHL 370

BLAST of Moc09g14400 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.9e-53
Identity = 152/387 (39.28%), Postives = 210/387 (54.26%), Query Frame = 0

Query: 7   KNTSEISITNQHIQVINPGNKISTVKLTDDNFLLWRLHVLTA-QGHGLEDFIDPE----- 66
           +NT   S  N   Q+   GNKIS VKL DD FLLW+  +LTA + + LE+F++ E     
Sbjct: 11  ENTEASSPIN---QIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPS 70

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 71  KYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETL 130

Query: 127 ---------ARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLL 186
                    A+ M+ K+KL N+KKGS+ LKEYF K  Q VDAL + +KP+S  DHI+++L
Sbjct: 131 QGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYIL 190

Query: 187 AGLGTEFDSTVSVISARVDPPTIQETYSLLLAQEGRNERNAINTEVSLPSVNLTTQEQSK 246
           AGLG+++ S +SVISAR D P++QE  SLLL QE +NE   I +E +LPSVN+ TQ  ++
Sbjct: 191 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLI-SETALPSVNIVTQ-TTE 250

Query: 247 KGHQANSTDTRGNWNNN-----RGRRGN-RSNRGRNWNNNFRIQCQLCGRFGHTASRCYQ 306
           KG ++     + N++NN     RG RGN RSNRGR  N N + QCQ+C + G++A RC+ 
Sbjct: 251 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN-KPQCQICAKLGYSADRCFF 310

Query: 307 RFDRSFQGPHSSAYSFGFHPTPSYGSASNPNQPQMNAFTLSQELNRDTNWYPDSGASHHV 313
           R+       +SS YS   H T SY + +  N PQM+A   + +LN D+NWYPDSGA++H+
Sbjct: 311 RYT---PRSNSSGYSPNSHNT-SYTNMN--NHPQMSAMVAALDLNIDSNWYPDSGATNHL 370

BLAST of Moc09g14400 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-05
Identity = 43/146 (29.45%), Postives = 72/146 (49.32%), Query Frame = 0

Query: 60  EARVMELKSKLENLKKGSLSLKEYFAKAKQIVDALTAASKPISKTDHIMHLLAGLGTEFD 119
           +AR + L S+L     G + + +Y+ K K++ D+L     P++  + +M++L GL  +FD
Sbjct: 111 DARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFD 170

Query: 120 STVSVISARVDPPTIQETYSLLLAQEGRNER----NAINTEVSLPSVNLTTQEQSKKGHQ 179
           + ++VI  R   P+  +  ++L  +E R +R    N  + + S  S  L   E       
Sbjct: 171 NIINVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPP---V 230

Query: 180 ANSTDTRGNWNNNRGR-RGNRSNRGR 201
            N   + GN    RGR RGN   RGR
Sbjct: 231 TNFQRSGGNQMGYRGRGRGNNIFRGR 253

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154487.12.5e-6541.73uncharacterized protein LOC111021757 [Momordica charantia][more]
XP_022136882.11.1e-5750.74dr1-associated corepressor homolog isoform X1 [Momordica charantia][more]
XP_022136883.14.3e-5750.94dr1-associated corepressor homolog isoform X2 [Momordica charantia][more]
KAA0048297.11.4e-5239.28Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK10642.11.4e-5239.28Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Q94HW23.3e-1228.40Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT942.2e-0826.99Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DLT91.2e-6541.73uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1C6N95.4e-5850.74dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1C8R22.1e-5750.94dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=... [more]
A0A5A7U2336.9e-5339.28Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CH976.9e-5339.28Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
AT1G34070.11.4e-0529.45CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 63..149
e-value: 5.8E-9
score: 35.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..201
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 61..307
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 61..307

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g14400.1Moc09g14400.1mRNA