Moc09g13280 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g13280
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr9: 11262474 .. 11267576 (+)
RNA-Seq Expression	Moc09g13280
Synteny	Moc09g13280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAACAGTGTGTTCCAGATTGTAGCTCGAACTCGGCCTCCGGATCGACCTGAACACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCTACGATCAAGTCAGTATAGGTCGGATTCCAAGTTTAGTTCGAGGCCAGAAATCGTCGTACCTGATCGGGGAGTGAGGTCCTCTACTTATGGGTGGTAGTCCCGCTAATCTCGCGACGGTTACATTCGGTAATCTCGGGACCGTCGGTTACACCCGGTAATCTCGGGACCGACGGTTACGCCCGATAATCACGCCGCAGACAGTTGCTCACATCGGCCCCTACCGAGCTCCCCGGTAGGTCAGACCTGGGCCAGGTTCACCTCGGCCCTCATACTTAGCATTTGTCGGCGTTAGTGGCGGCCATCTCGACTATCCGAGCTGGGCATGACTCATGAGCCATCTTGGAGCACCAATAGGGGTCCTCCACGTGTCCAGGGTATTCCCTTCCCCAAATAAGTTAGATCGATCTTTTGCCATTTTTAGTGATGGAATGTATTAGTTGTTTTCTAATTAGTTGAGTAGTTTAGATTTTGTTGTAATGAGATTTGGTTGTTCAATGTATCTTTTAGTTTTGATTAGTTACGGAGTTTTCATCCTAAGTCTATATATAAGACTTCCCTATATTACAAAATCATCAAGTTTGACGAAAGGTTGTAGGTTTCTCCTGAATATTTTGAGTTTCTCAATTTTTTTTTTTGAGACAGGCACGGATGATGAAACCACTACTTGTCATATTTGAAATATGCTTATTTAGGACTTAATAGAAGTTACCTATAATTATTGCATCAACTTTCACTAAGTGAATCCTTATTATTGTAGGTATTAACAAAGTACAAGAAAGCCATCGTTACTTAAAAAAAAAAAGAAGAAAGCCATCGAATGGACCATCATTGACATCACGGGAATATGTTGTTTTAAATAATAATAATAATAATAATAATAATATATAGCCTCGCGTTTTGTATGCACAAGATTATCTTGAAGGATAGAGCCACAAATTCTATGGAATACCAGAGAAGCTCACTCCAAGATGAAGGAAGCAGTGGAAAAGGAAATCTTTAAAAGGTCGAACACGAGAGTCATCTACTATATTTTTTAATGCAGTTGGGTGAGTCCAGTACAATAGATTAATTAATTGATCGAAACTTGTACCGATCATTTTCCATTGTCGTTTATTGATAAAATGCTTGACTGTTTTGCAAAAGGAAATTTTATTATTTTTTGGATGGCAATTCGGGCTATGCTTATATTACCATCGGTCCAGAAGATATATTTAAAGAGATAATATCTTGGGAGGGCTATTTTAAAATCTTAATTACATGAATATCTTTAGGTTTCAAAATTTACACTTTTAGATATTTGCAGTTAGGATTTTATTTTAATACCGTTTCTACCCTTATTTATTGTTTTTTATTTTATTATAATTTTTAAATTTTAAAGATTTGAATCCTTAATTTGTAATTATATTCATTTAATTCTTGTGGGCTCCATTGAAAATTTCAACTTTAATTCCACAAATCTCTACTTCAAAAAAGATTTTTTTGTCTCACCAATTAACAACTTCCAATTTTGTTAAATGAATTAAATGTTGTCGATTCTCTTTCCTCGTTTGCTGTAGATTTTCTCCAGCCACCGTGCAAAGCCGATTTTCTTCATCGCTGTCTTCGTTTCGAAGGTGCAAAGACGTCGGCTGCCAGACCTTCATTTTCCATCTTCAGGGCTTTTATGAACAAGGTATTTATTTCTTTTGCACGTTTCCAACGCCGTTCATTCCCGTCTTTGCAAGTTTCCAACGTCGTTCATTGTACACCAAATCAACGAGGTATTGATTTCTTCTTCCCCAAACACGTCCAAACCTTCAATTTCCGTCGCTGAATAAACTTTCTGTCGACGTCTTTGGACGTTTCCGACGTCGTGCAGCGTGTTCCTCGTCTCCTGTCCCCGTCTTCCGTTGAGATTGGTATATATGGAGATATATTTTATGTATGTGTAGAGAAAATGGAAGTTCTAAACGTCTCACAGTGTTAGTATTCTTGATTATATTTGTATATATAAGTATATATTGTATATGTGAATATATCTTACATGTGTATACATATATCTTATTCTGTACAAATGGTCCTCCATACCATTTGTAATTATTAGTCTTCCGTTAAGATTGGTATATATGGGGATATATTTTGTTTATGTGTATAGAAAATTGTAGTTCTAAATGTCTTATATTCTTAGTATTCCTGATTATATTCGTATATATAGGTATATATTGTATGTGTCACATAGTAATGTAGAAATGGTCCTCCAAAATTGAAATTTTAAACGTCTCATGGATGAAGCGAAAAAAGTTCTTGATTTCGAATTTGGGAGATTTTTGGATGGGATTTAGAGATATTTTTGGAGGTTATGATTTCAATTTTGGGAATTTAGGGTTTTGTTTTTAATGTTTTGGTGTTTTAATTTGTTTTGGAAAGTATCATTCACCTAAAATTATGGGATCTAAATTATAACCTTCTAATTAATCAATTTTGCATATTAAAATGAATTTAAAATTAATTTGTAAATAGAAGAGGCTATTTAAGTAATTTATATGATGGGTACCCTCTTAAATAGGGGTTGATACAGGACAAATGTGTAAATTCTATACATTTCATCCTTTTATGTAATTAGGATCTTTAAATAGTCTATCAATGTACTAATCCCATATTTAAATGTCTGAATCGAACATTCAAATTAAGAAGGATGTCATTTGGTTTATGTAATGCCCCTGCCACTTTTCAATGTTGTATGATGGTGAATTTTTTTTGACATGGTTGAAAATATTTTAAAAATTTTCATGGACGATTTCTCTGCATTTTCTTTCAAATCATTTGAAAAAATTTTGGAAAAATCTTGAAAAGATTTTATAAACATGTGAGGAAACAAATTTTCTTTTGAATTGGTATAAGTGTTATTTCACTGTACAAGAGATAATTATTTTGGATCATAAAATTTCGGGCACGGGTATGGAAGTAGATAGAGCTAAATTACCTCACCCACATCTATAAAAGGAGTTCAAATTTTGTTAGGACACGTTGTCGTTTCATAAAAGATTTTTTTTTTTTACAAATAATGTTTTAAAGCTTTTACAACACTTGGAGAAGCTCCTACCATAGAACCTATAATAATTGAACCAAATTGGATTAGACCTTGCCAACAATATTCGTTAAAGTATTGCATTTCGTTACTATGCGAGTAAGAATCTAATAGAGGCACAACTTTACGCTATTATAGCGAAACAAACTTTTAGCTTTGGTAGATACTAAGGTACTGTTTTTACTGACTGCTCTCAAATATTTGGTTGCAAAGAAGGGTGCAAAATTGAAATAAGGGTTAAGAGATAGATTTTGTGCATACTTTTAAACTTAGTTTTTTTGGTTGAAAAGTTTTTAGGCTTAGTTGATTCAGTCTTGTTCATAACATGCATATATTTGAACATATTGTTTGGGGGTAAACATACCCAAGACACGTGGAGGACCCTTATTAGTGTTTGAAGAAACTGAATAAAAAGGATTGCCTAGATCCATCTCGGCCCTGCCGAGGAAACCGGGTTCGCCCGTTATAAAAGATTAAGTATGGGCACCAAGGTTCGACCTAACTGGGGTCCGACCTGCTCGGAACCCGACAGGTCAGATATGAGAAAAGACATATAATCGCCGGTCGTGTGTGCTGTCGGATCCATCCCCTATAAATAGAGGGTTTCATTTAACGCTCAGGTATCGAATCTCACCTCGAACTAAATACGAAGTCCGATCTATACTGACTTGAGCGTCGGAGTGCTTACCTTCTTGTGCAGGTCCACCCTAGTACTCAGGTCGGAACCGGAGATCGGGTTCGAGCTTGATTCGTGAAGAACCGTTGTGAAAACCCTTGCATAAACATTTGGCGCCGTCTGTGGGGAAGGACGATCTAAGTCATCCCGATCTAAGAAACATACGCAAAAATGGTGCAACCAGCAAACTCTGCCAACACGACAGAACGGAGGGGTTCGAACGCTGATAACGGCCCTTAGCGAGATCTTGACGCTAGAACGGTCGAGGACCAGGTTGAAGCAGGGCAAGAGGGAGATCTTCCATGGAGATCGGCCCGCCATGCGAATCAAGAGTTACCCCCTGCTCACCCTAAACCCTCAAAGGCCAATCGAGGCCGAGGAGGGACCTCCAGAAAGGTCACCCGAAGGGCCAACCCGACAGCGGACCCCGAGGCTTTGTCTACTCTCCAGCGCGAGTTGGATGATATGTGCCATCGGTTGCGCAGAATGGAAGAAATGTACGCCGAGGCGACGCGGGCTAACCGAACAACGTCTCCCTCCAGGGTCCCAGGCGCACCCGGAGAGAAGGAGGGCCAAGTTCCGTCTTTCCACCCTGGCGATCGCGAACCCATTCCCAACAATGAAGGAGTGGATTACAGCTTGTGGGATAACGATCTGAGAAAGCACCTCACTGAAAAGAAGAAGAGAGCATCTCGAGAGCCGAAAGAGTTTTTGTCCTACTCCCGAGAGTTCTCCAATTCTAACCTCAAGGCTCAGTCAAAATACAAGCCTCTGACACCAGAAGCTGTGATCACCAGGGAAGAATTCGACCTGATGAAGCACAGGTTCGACGGGCAAGTTGAGACGCTCAAAGCCAAATGCGAGAAGAAAGAGTGCTCGTTCGACGATGGCGACTTGGGAGAATCGCCATTCACTTCGGACATCTTGGAGGCTCCAATCCCCCCGAAGTTTAAAACTCCTACCATGAAGCCTTATGATGGGTCTAAGGATCCAAAGGACTATGTTGAGGTCTTCAAGTGCCTCATGGACTTTCAAGCGGCAACAGATGCAATAAAATGCCTCGCCTTCCACATCGCGCTTGCAGGCAGCCCGCGCCTGTGGTACCGGAGACTGCCGGCTAGGTCGATCTCAACCTACTCTCAGCTGAGAAAGGAGTTCATTAGTCAATTCTCTTCTCGGCATTACGATAGAAAGACAGCAACTCACCTCGCCACCATCAGACAAAAGGAAGGTGAGACGCTGAGAGAGTATGTCACAAGGTTCTAG

mRNA sequence

ATGCACAACAGTGTGTTCCAGATTGTAGCTCGAACTCGGCCTCCGGATCGACCTGAACACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCTACGATCAAGTCAGTATAGATTTTCTCCAGCCACCGTGCAAAGCCGATTTTCTTCATCGCTGTCTTCGTTTCGAAGGTGCAAAGACGTCGGCTGCCAGACCTTCATTTTCCATCTTCAGGGCTTTTATGAACAAGATCCATCTCGGCCCTGCCGAGGAAACCGGGTTCGCCCGTTATAAAAGATTAAGTATGGGCACCAAGGTTCGACCTAACTGGGGTCCGACCTGCTCGGAACCCGACAGGTCCACCCTAGTACTCAGAACGGTCGAGGACCAGGTTGAAGCAGGGCAAGAGGGAGATCTTCCATGGAGATCGGCCCGCCATGCGAATCAAGAGTTACCCCCTGCTCACCCTAAACCCTCAAAGGCCAATCGAGGCCGAGGAGGGACCTCCAGAAAGGTCACCCGAAGGGCCAACCCGACAGCGGACCCCGAGGCTTTGTCTACTCTCCAGCGCGAGTTGGATGATATGTGCCATCGGTTGCGCAGAATGGAAGAAATGTACGCCGAGGCGACGCGGGCTAACCGAACAACGTCTCCCTCCAGGGTCCCAGGCGCACCCGGAGAGAAGGAGGGCCAAGTTCCGTCTTTCCACCCTGGCGATCGCGAACCCATTCCCAACAATGAAGGAGTGGATTACAGCTTGTGGGATAACGATCTGAGAAAGCACCTCACTGAAAAGAAGAAGAGAGCATCTCGAGAGCCGAAAGAGTTTTTGTCCTACTCCCGAGAGTTCTCCAATTCTAACCTCAAGGCTCAGTCAAAATACAAGCCTCTGACACCAGAAGCTGTGATCACCAGGGAAGAATTCGACCTGATGAAGCACAGGTTCGACGGGCAAGTTGAGACGCTCAAAGCCAAATGCGAGAAGAAAGAGTGCTCGTTCGACGATGGCGACTTGGGAGAATCGCCATTCACTTCGGACATCTTGGAGGCTCCAATCCCCCCGAAGTTTAAAACTCCTACCATGAAGCCTTATGATGGGTCTAAGGATCCAAAGGACTATGTTGAGGTCTTCAAGTGCCTCATGGACTTTCAAGCGGCAACAGATGCAATAAAATGCCTCGCCTTCCACATCGCGCTTGCAGGCAGCCCGCGCCTGTGGTACCGGAGACTGCCGGCTAGGTCGATCTCAACCTACTCTCAGCTGAGAAAGGAGTTCATTAGTCAATTCTCTTCTCGGCATTACGATAGAAAGACAGCAACTCACCTCGCCACCATCAGACAAAAGGAAGGTGAGACGCTGAGAGAGTATGTCACAAGGTTCTAG

Coding sequence (CDS)

ATGCACAACAGTGTGTTCCAGATTGTAGCTCGAACTCGGCCTCCGGATCGACCTGAACACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCTACGATCAAGTCAGTATAGATTTTCTCCAGCCACCGTGCAAAGCCGATTTTCTTCATCGCTGTCTTCGTTTCGAAGGTGCAAAGACGTCGGCTGCCAGACCTTCATTTTCCATCTTCAGGGCTTTTATGAACAAGATCCATCTCGGCCCTGCCGAGGAAACCGGGTTCGCCCGTTATAAAAGATTAAGTATGGGCACCAAGGTTCGACCTAACTGGGGTCCGACCTGCTCGGAACCCGACAGGTCCACCCTAGTACTCAGAACGGTCGAGGACCAGGTTGAAGCAGGGCAAGAGGGAGATCTTCCATGGAGATCGGCCCGCCATGCGAATCAAGAGTTACCCCCTGCTCACCCTAAACCCTCAAAGGCCAATCGAGGCCGAGGAGGGACCTCCAGAAAGGTCACCCGAAGGGCCAACCCGACAGCGGACCCCGAGGCTTTGTCTACTCTCCAGCGCGAGTTGGATGATATGTGCCATCGGTTGCGCAGAATGGAAGAAATGTACGCCGAGGCGACGCGGGCTAACCGAACAACGTCTCCCTCCAGGGTCCCAGGCGCACCCGGAGAGAAGGAGGGCCAAGTTCCGTCTTTCCACCCTGGCGATCGCGAACCCATTCCCAACAATGAAGGAGTGGATTACAGCTTGTGGGATAACGATCTGAGAAAGCACCTCACTGAAAAGAAGAAGAGAGCATCTCGAGAGCCGAAAGAGTTTTTGTCCTACTCCCGAGAGTTCTCCAATTCTAACCTCAAGGCTCAGTCAAAATACAAGCCTCTGACACCAGAAGCTGTGATCACCAGGGAAGAATTCGACCTGATGAAGCACAGGTTCGACGGGCAAGTTGAGACGCTCAAAGCCAAATGCGAGAAGAAAGAGTGCTCGTTCGACGATGGCGACTTGGGAGAATCGCCATTCACTTCGGACATCTTGGAGGCTCCAATCCCCCCGAAGTTTAAAACTCCTACCATGAAGCCTTATGATGGGTCTAAGGATCCAAAGGACTATGTTGAGGTCTTCAAGTGCCTCATGGACTTTCAAGCGGCAACAGATGCAATAAAATGCCTCGCCTTCCACATCGCGCTTGCAGGCAGCCCGCGCCTGTGGTACCGGAGACTGCCGGCTAGGTCGATCTCAACCTACTCTCAGCTGAGAAAGGAGTTCATTAGTCAATTCTCTTCTCGGCATTACGATAGAAAGACAGCAACTCACCTCGCCACCATCAGACAAAAGGAAGGTGAGACGCTGAGAGAGTATGTCACAAGGTTCTAG

Protein sequence

MHNSVFQIVARTRPPDRPEHLGGPAQKGEHSYDQVSIDFLQPPCKADFLHRCLRFEGAKTSAARPSFSIFRAFMNKIHLGPAEETGFARYKRLSMGTKVRPNWGPTCSEPDRSTLVLRTVEDQVEAGQEGDLPWRSARHANQELPPAHPKPSKANRGRGGTSRKVTRRANPTADPEALSTLQRELDDMCHRLRRMEEMYAEATRANRTTSPSRVPGAPGEKEGQVPSFHPGDREPIPNNEGVDYSLWDNDLRKHLTEKKKRASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITREEFDLMKHRFDGQVETLKAKCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYVEVFKCLMDFQAATDAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRF

Homology

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BLAST of Moc09g13280 vs. NCBI nr
Match: XP_022155139.1 (uncharacterized protein LOC111022280 [Momordica charantia])

HSP 1 Score: 391.0 bits (1003), Expect = 1.4e-104
Identity = 199/233 (85.41%), Postives = 209/233 (89.70%), Query Frame = 0


Query: 214 VPGAPGEKEGQVPSFHPGDREPIPNNEGVDYSLWDNDLRKHLTEKKKRASREPKEFLSYS 273
           +PGAPGEK    PS  PG+REPIPN+EGVDYSL DNDLRKHLT+KKK+AS EP++ LSYS
Sbjct: 4   IPGAPGEK--GAPSIQPGNREPIPNDEGVDYSLRDNDLRKHLTDKKKKASWEPEDSLSYS 63

Query: 274 REFSNSNLKAQSKYKPLTPEAVITREEFDLMKHRFDGQVETLKAKCEKKECSFDDGDLGE 333
           REFSNSNLKAQSKYKPL PEAVI REEFDLMKHRFD QVE LKA+CEKKE  FDD DLGE
Sbjct: 64  REFSNSNLKAQSKYKPLIPEAVINREEFDLMKHRFDEQVEALKARCEKKESPFDDDDLGE 123

Query: 334 SPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYVEVFKCLMDFQAATDAIKCLAFHIALA 393
           SPFTSDI+EAPIPPKFKTPTMKPYDGSKDPKDYVEVF+ LMDFQAATDAIKCLAF IAL 
Sbjct: 124 SPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCLAFQIALT 183

Query: 394 GSPRLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETL 447
           GS RLW RRLPARSISTYSQLRKEFI QFS RHYDRKTATHLATIRQKE ETL
Sbjct: 184 GSARLWCRRLPARSISTYSQLRKEFIGQFSFRHYDRKTATHLATIRQKEDETL 234

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BLAST of Moc09g13280 vs. NCBI nr
Match: XP_022157897.1 (uncharacterized protein LOC111024503 [Momordica charantia])

HSP 1 Score: 342.4 bits (877), Expect = 5.8e-90
Identity = 174/193 (90.16%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 261 RASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITREEFDLMKHRFDGQVETLKAKCE 320
           RASRE ++  SYSREFSNS+ KAQSKYKPLTPEAVITREEFDLMKHRFD QVE LKAKCE
Sbjct: 468 RASRESEDSPSYSREFSNSDFKAQSKYKPLTPEAVITREEFDLMKHRFDEQVEALKAKCE 527

Query: 321 KKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYVEVFKCLMDFQAAT 380
           KKECSFDDGDLGESPFTSDILE PIPPKFKTPTMK YD SKDPKDYVEVF+ LMDFQAAT
Sbjct: 528 KKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDPKDYVEVFEGLMDFQAAT 587

Query: 381 DAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQ 440
           DAIKC AF IAL GS RLWYRRLPARSISTYSQLRKEFISQF SRHYDRKTATHLATIRQ
Sbjct: 588 DAIKCSAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRKTATHLATIRQ 647

Query: 441 KEGETLREYVTRF 454
           KEGETLREYVTRF
Sbjct: 648 KEGETLREYVTRF 660

[Close]

BLAST of Moc09g13280 vs. NCBI nr
Match: XP_022159327.1 (uncharacterized protein LOC111025738 [Momordica charantia])

HSP 1 Score: 333.6 bits (854), Expect = 2.7e-87
Identity = 196/334 (58.68%), Postives = 221/334 (66.17%), Query Frame = 0


Query: 120 VEDQVEAGQEGDLPWRSARHANQELPPAHPKPSKANRGRGGTSRKVTRRANPTADPEALS 179
           VE Q+  G   +   RSAR    +L PAHPKP KANRGRGG SR+ T  A P    E   
Sbjct: 31  VEGQIHEGLGTEPFCRSARITTPDLSPAHPKPFKANRGRGGASRRTTLGAAPAPSRENFD 90

Query: 180 TLQRELDDMCHRLRRMEEMYAEATRANRTTSPSRVPGAPGEKEGQVPSFHPGDREPIPNN 239
            LQ+E++ M  ++  MEEMY E  +A    S S    A  E+                  
Sbjct: 91  ALQKEMEAMRTQMLTMEEMYNEMVQAVGAGSRSEDRAARDER------------------ 150

Query: 240 EGVDYSLWDNDLRKHLTEKKKRASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITRE 299
                     DLR HL+ K+  + R+ +   S S    NSN +A+S Y P+ PE VITRE
Sbjct: 151 ---------GDLRDHLSRKRSSSLRKGR---SPSCSHKNSNQQAESSYNPVVPEGVITRE 210

Query: 300 EFDLMKHRFDGQVETLKAKCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDG 359
           EFD +K +FD QVETLKA+CE K  +FDDGDLGESPFTSDILEA IP KFKTPTMKPYDG
Sbjct: 211 EFDQLKSKFDAQVETLKARCEVKGSTFDDGDLGESPFTSDILEALIPSKFKTPTMKPYDG 270

Query: 360 SKDPKDYVEVFKCLMDFQAATDAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFI 419
           SKDPKDYVEVF+ LM FQAATDAIK  AF IAL  S RLWYRRLPARSISTYSQLRKEF 
Sbjct: 271 SKDPKDYVEVFEGLMGFQAATDAIKYRAFQIALTSSARLWYRRLPARSISTYSQLRKEFN 330

Query: 420 SQFSSRHYDRKTATHLATIRQKEGETLREYVTRF 454
           SQFSSRHY+RKTATHLATIRQKE ETLREYVT F
Sbjct: 331 SQFSSRHYERKTATHLATIRQKERETLREYVTWF 334

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BLAST of Moc09g13280 vs. NCBI nr
Match: XP_022151719.1 (uncharacterized protein LOC111019634 [Momordica charantia])

HSP 1 Score: 313.2 bits (801), Expect = 3.8e-81
Identity = 177/266 (66.54%), Postives = 195/266 (73.31%), Query Frame = 0


Query: 195 MEEMYAEATRA--NRTTSPSRVP-----GAPGEKEGQVPSFHPGDREPIPNNEGVDYSLW 254
           ME+MY+E  +A   R+ S +RV         G   G V   HP         E  +Y+  
Sbjct: 8   MEKMYSEMVQAAGARSRSENRVARNDMHEQRGHHLGPVKKGHP------EGGEDEEYTHQ 67

Query: 255 DNDLRKHLTEKKKRASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITREEFDLMKHR 314
             DLR+HL  K+  + R+ +   S S    NSN +A+S Y P+TPE VITREEFD +K +
Sbjct: 68  RGDLREHLNRKRSSSLRKGQ---SPSCSHRNSNQQAESSYNPITPEGVITREEFDQLKSK 127

Query: 315 FDGQVETLKAKCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYV 374
           FD QVE LKAKCEKKE SFDDGDLGESPFTSDILEA IP KFKTPTMKPYDGSKDPKDYV
Sbjct: 128 FDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDPKDYV 187

Query: 375 EVFKCLMDFQAATDAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFISQFSSRHY 434
           EVF+ LMDFQAATDAIKC  F IAL GS RLWYRRLPARSISTYSQLRKEFI QFSSRHY
Sbjct: 188 EVFEGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEFIIQFSSRHY 247

Query: 435 DRKTATHLATIRQKEGETLREYVTRF 454
           DRKTATHL TIRQKEGETLREYVTRF
Sbjct: 248 DRKTATHLTTIRQKEGETLREYVTRF 264

[Close]

BLAST of Moc09g13280 vs. NCBI nr
Match: XP_022155128.1 (uncharacterized protein LOC111022267 [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 1.5e-77
Identity = 156/214 (72.90%), Postives = 175/214 (81.78%), Query Frame = 0


Query: 240 EGVDYSLWDNDLRKHLTEKKKRASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITRE 299
           E  +Y+    DLR+HL  K+  + R+ +   S S    NSN +A+S Y P+TP+ VITRE
Sbjct: 33  EDEEYTHQRGDLREHLNRKRSSSLRKGQ---SPSSSHRNSNQQAESSYNPITPKRVITRE 92

Query: 300 EFDLMKHRFDGQVETLKAKCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDG 359
           EFD +K +FD QVE LKA CEKKE SFDDGDLGE PFT DILEAPI PKFKTPTMKPYDG
Sbjct: 93  EFDQLKSKFDAQVEALKANCEKKESSFDDGDLGELPFTLDILEAPIHPKFKTPTMKPYDG 152

Query: 360 SKDPKDYVEVFKCLMDFQAATDAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFI 419
           SK+PKDYV+VF+ LM+FQAATDAIKC AF IA  GS RLWYRRLPARSISTYSQLRKEFI
Sbjct: 153 SKNPKDYVKVFEGLMNFQAATDAIKCRAFQIAFTGSARLWYRRLPARSISTYSQLRKEFI 212

Query: 420 SQFSSRHYDRKTATHLATIRQKEGETLREYVTRF 454
           SQFSSR+YDRKTATHLATIRQK+GETLREYVTRF
Sbjct: 213 SQFSSRYYDRKTATHLATIRQKKGETLREYVTRF 243

[Close]

BLAST of Moc09g13280 vs. ExPASy TrEMBL
Match: A0A6J1DPC9 (uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022280 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 6.9e-105
Identity = 199/233 (85.41%), Postives = 209/233 (89.70%), Query Frame = 0


Query: 214 VPGAPGEKEGQVPSFHPGDREPIPNNEGVDYSLWDNDLRKHLTEKKKRASREPKEFLSYS 273
           +PGAPGEK    PS  PG+REPIPN+EGVDYSL DNDLRKHLT+KKK+AS EP++ LSYS
Sbjct: 4   IPGAPGEK--GAPSIQPGNREPIPNDEGVDYSLRDNDLRKHLTDKKKKASWEPEDSLSYS 63

Query: 274 REFSNSNLKAQSKYKPLTPEAVITREEFDLMKHRFDGQVETLKAKCEKKECSFDDGDLGE 333
           REFSNSNLKAQSKYKPL PEAVI REEFDLMKHRFD QVE LKA+CEKKE  FDD DLGE
Sbjct: 64  REFSNSNLKAQSKYKPLIPEAVINREEFDLMKHRFDEQVEALKARCEKKESPFDDDDLGE 123

Query: 334 SPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYVEVFKCLMDFQAATDAIKCLAFHIALA 393
           SPFTSDI+EAPIPPKFKTPTMKPYDGSKDPKDYVEVF+ LMDFQAATDAIKCLAF IAL 
Sbjct: 124 SPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCLAFQIALT 183

Query: 394 GSPRLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETL 447
           GS RLW RRLPARSISTYSQLRKEFI QFS RHYDRKTATHLATIRQKE ETL
Sbjct: 184 GSARLWCRRLPARSISTYSQLRKEFIGQFSFRHYDRKTATHLATIRQKEDETL 234

[Close]

BLAST of Moc09g13280 vs. ExPASy TrEMBL
Match: A0A6J1DVR0 (uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024503 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 2.8e-90
Identity = 174/193 (90.16%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 261 RASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITREEFDLMKHRFDGQVETLKAKCE 320
           RASRE ++  SYSREFSNS+ KAQSKYKPLTPEAVITREEFDLMKHRFD QVE LKAKCE
Sbjct: 468 RASRESEDSPSYSREFSNSDFKAQSKYKPLTPEAVITREEFDLMKHRFDEQVEALKAKCE 527

Query: 321 KKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYVEVFKCLMDFQAAT 380
           KKECSFDDGDLGESPFTSDILE PIPPKFKTPTMK YD SKDPKDYVEVF+ LMDFQAAT
Sbjct: 528 KKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDPKDYVEVFEGLMDFQAAT 587

Query: 381 DAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQ 440
           DAIKC AF IAL GS RLWYRRLPARSISTYSQLRKEFISQF SRHYDRKTATHLATIRQ
Sbjct: 588 DAIKCSAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRKTATHLATIRQ 647

Query: 441 KEGETLREYVTRF 454
           KEGETLREYVTRF
Sbjct: 648 KEGETLREYVTRF 660

[Close]

BLAST of Moc09g13280 vs. ExPASy TrEMBL
Match: A0A6J1DZJ1 (uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025738 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.3e-87
Identity = 196/334 (58.68%), Postives = 221/334 (66.17%), Query Frame = 0


Query: 120 VEDQVEAGQEGDLPWRSARHANQELPPAHPKPSKANRGRGGTSRKVTRRANPTADPEALS 179
           VE Q+  G   +   RSAR    +L PAHPKP KANRGRGG SR+ T  A P    E   
Sbjct: 31  VEGQIHEGLGTEPFCRSARITTPDLSPAHPKPFKANRGRGGASRRTTLGAAPAPSRENFD 90

Query: 180 TLQRELDDMCHRLRRMEEMYAEATRANRTTSPSRVPGAPGEKEGQVPSFHPGDREPIPNN 239
            LQ+E++ M  ++  MEEMY E  +A    S S    A  E+                  
Sbjct: 91  ALQKEMEAMRTQMLTMEEMYNEMVQAVGAGSRSEDRAARDER------------------ 150

Query: 240 EGVDYSLWDNDLRKHLTEKKKRASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITRE 299
                     DLR HL+ K+  + R+ +   S S    NSN +A+S Y P+ PE VITRE
Sbjct: 151 ---------GDLRDHLSRKRSSSLRKGR---SPSCSHKNSNQQAESSYNPVVPEGVITRE 210

Query: 300 EFDLMKHRFDGQVETLKAKCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDG 359
           EFD +K +FD QVETLKA+CE K  +FDDGDLGESPFTSDILEA IP KFKTPTMKPYDG
Sbjct: 211 EFDQLKSKFDAQVETLKARCEVKGSTFDDGDLGESPFTSDILEALIPSKFKTPTMKPYDG 270

Query: 360 SKDPKDYVEVFKCLMDFQAATDAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFI 419
           SKDPKDYVEVF+ LM FQAATDAIK  AF IAL  S RLWYRRLPARSISTYSQLRKEF 
Sbjct: 271 SKDPKDYVEVFEGLMGFQAATDAIKYRAFQIALTSSARLWYRRLPARSISTYSQLRKEFN 330

Query: 420 SQFSSRHYDRKTATHLATIRQKEGETLREYVTRF 454
           SQFSSRHY+RKTATHLATIRQKE ETLREYVT F
Sbjct: 331 SQFSSRHYERKTATHLATIRQKERETLREYVTWF 334

[Close]

BLAST of Moc09g13280 vs. ExPASy TrEMBL
Match: A0A6J1DDW5 (uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019634 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.8e-81
Identity = 177/266 (66.54%), Postives = 195/266 (73.31%), Query Frame = 0


Query: 195 MEEMYAEATRA--NRTTSPSRVP-----GAPGEKEGQVPSFHPGDREPIPNNEGVDYSLW 254
           ME+MY+E  +A   R+ S +RV         G   G V   HP         E  +Y+  
Sbjct: 8   MEKMYSEMVQAAGARSRSENRVARNDMHEQRGHHLGPVKKGHP------EGGEDEEYTHQ 67

Query: 255 DNDLRKHLTEKKKRASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITREEFDLMKHR 314
             DLR+HL  K+  + R+ +   S S    NSN +A+S Y P+TPE VITREEFD +K +
Sbjct: 68  RGDLREHLNRKRSSSLRKGQ---SPSCSHRNSNQQAESSYNPITPEGVITREEFDQLKSK 127

Query: 315 FDGQVETLKAKCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYV 374
           FD QVE LKAKCEKKE SFDDGDLGESPFTSDILEA IP KFKTPTMKPYDGSKDPKDYV
Sbjct: 128 FDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDPKDYV 187

Query: 375 EVFKCLMDFQAATDAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFISQFSSRHY 434
           EVF+ LMDFQAATDAIKC  F IAL GS RLWYRRLPARSISTYSQLRKEFI QFSSRHY
Sbjct: 188 EVFEGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEFIIQFSSRHY 247

Query: 435 DRKTATHLATIRQKEGETLREYVTRF 454
           DRKTATHL TIRQKEGETLREYVTRF
Sbjct: 248 DRKTATHLTTIRQKEGETLREYVTRF 264

[Close]

BLAST of Moc09g13280 vs. ExPASy TrEMBL
Match: A0A6J1DM55 (uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022267 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 7.2e-78
Identity = 156/214 (72.90%), Postives = 175/214 (81.78%), Query Frame = 0


Query: 240 EGVDYSLWDNDLRKHLTEKKKRASREPKEFLSYSREFSNSNLKAQSKYKPLTPEAVITRE 299
           E  +Y+    DLR+HL  K+  + R+ +   S S    NSN +A+S Y P+TP+ VITRE
Sbjct: 33  EDEEYTHQRGDLREHLNRKRSSSLRKGQ---SPSSSHRNSNQQAESSYNPITPKRVITRE 92

Query: 300 EFDLMKHRFDGQVETLKAKCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDG 359
           EFD +K +FD QVE LKA CEKKE SFDDGDLGE PFT DILEAPI PKFKTPTMKPYDG
Sbjct: 93  EFDQLKSKFDAQVEALKANCEKKESSFDDGDLGELPFTLDILEAPIHPKFKTPTMKPYDG 152

Query: 360 SKDPKDYVEVFKCLMDFQAATDAIKCLAFHIALAGSPRLWYRRLPARSISTYSQLRKEFI 419
           SK+PKDYV+VF+ LM+FQAATDAIKC AF IA  GS RLWYRRLPARSISTYSQLRKEFI
Sbjct: 153 SKNPKDYVKVFEGLMNFQAATDAIKCRAFQIAFTGSARLWYRRLPARSISTYSQLRKEFI 212

Query: 420 SQFSSRHYDRKTATHLATIRQKEGETLREYVTRF 454
           SQFSSR+YDRKTATHLATIRQK+GETLREYVTRF
Sbjct: 213 SQFSSRYYDRKTATHLATIRQKKGETLREYVTRF 243

The following BLAST results are available for this feature:

BLAST of Moc09g13280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155139.1	1.4e-104	85.41	uncharacterized protein LOC111022280 [Momordica charantia]	[more]
XP_022157897.1	5.8e-90	90.16	uncharacterized protein LOC111024503 [Momordica charantia]	[more]
XP_022159327.1	2.7e-87	58.68	uncharacterized protein LOC111025738 [Momordica charantia]	[more]
XP_022151719.1	3.8e-81	66.54	uncharacterized protein LOC111019634 [Momordica charantia]	[more]
XP_022155128.1	1.5e-77	72.90	uncharacterized protein LOC111022267 [Momordica charantia]	[more]

BLAST of Moc09g13280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g13280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPC9	6.9e-105	85.41	uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DVR0	2.8e-90	90.16	uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DZJ1	1.3e-87	58.68	uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DDW5	1.8e-81	66.54	uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DM55	7.2e-78	72.90	uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc09g13280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 178..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 388..453 e-value: 1.6E-11 score: 44.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g13280.1	Moc09g13280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity