Moc09g13150 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g13150
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag-Pol polyprotein
Location	chr9: 11159834 .. 11160905 (-)
RNA-Seq Expression	Moc09g13150
Synteny	Moc09g13150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTATCTTGAGAAAAGATAATTGCCTTGCAGCCATCAGTGCAAGGTCGGCGGATGTCACAGATGATAAGTGGAATAAGATGGAGGGGAATGCTGTTGCAAATCTTCATCTGGCTCTAGCAGATAAAGTGTTGTCAAGCATAGAGGGGAAGAAAACTACGAATGAGATTTGGGATCATCTCGAAAAGTTGTACGAGACCAGATCACTTCACAACAAGATTTTCCTTAAGAGGATATTGTATACTCTTCGGATGTCAGAATCTACTCCAATGACGGAGCACATCAACACGTTGAATACTCTATTTTCTCAACTCACATCATTGGGTTGTAAAATAGAGCCAAATGAATGTGCTGAACTTCTACTTCAAAGTCTTCCTGATTCGTATGATCAACTCGTCATCAACTTGACAAATAATGTTCTCACCGACTATTTAAACTTTGAAGATATTGGAGCTACTGTCCTGGAAGAGGAAAATCGGCGTAGAAACAAAGTAGATAAGTTGGCGAGTTCGCAACAAGCAGAGGCTCTAGTGGTGACAAGAGGTAGATCAACGGAACTTGGCTCAAATGGGAGCCAAAATCAAGGAAAGGGCAAAATTAAGAAGTAAGAAGAACATAAAGTGCTACCATTGTGGCAAAAAGGAACATCTGAAGAAGGATTGTTGGAGTCTAAATAAGAAAGATTTCAATCCTCAAAGAAATGTAGCAAGCACTTCAAATGAAGGTGATATCTTGTGTTGTGATGCAGCGACAACGGTTGGAGGCAGAAATAGTTTAGCTGACGTGTGGTTCATCGACTTATGAGCCATTTATCACATGACCTCTCAACGAGAATGGTTCCATCATTATGAACCTGTCTTTGGACAATTTGTGTTTAGCTGTGACGATCACGCCTTGAAGATTGTCAGTATTGGAACTATCAAGTTGAAGTTCCATGACAATACAGTTCGCACAATTCAAAAAGTGCAACATGTAGAAGGTCTGACAAAGAACTTCCTCTCGGTAGGTCAACTAGATAACCTTGATTGCAAGGTGATTGGGGAGAAAAGTATTATAAAGGTGATGTGA

mRNA sequence

ATGAAGGTTATCTTGAGAAAAGATAATTGCCTTGCAGCCATCAGTGCAAGGTCGGCGGATGTCACAGATGATAAGTGGAATAAGATGGAGGGGAATGCTGTTGCAAATCTTCATCTGGCTCTAGCAGATAAAGTGTTGTCAAGCATAGAGGGGAAGAAAACTACGAATGAGATTTGGGATCATCTCGAAAAGTTGTACGAGACCAGATCACTTCACAACAAGATTTTCCTTAAGAGGATATTGTATACTCTTCGGATGTCAGAATCTACTCCAATGACGGAGCACATCAACACGTTGAATACTCTATTTTCTCAACTCACATCATTGGGTTGTAAAATAGAGCCAAATGAATGTGCTGAACTTCTACTTCAAAGTCTTCCTGATTCGTATGATCAACTCGTCATCAACTTGACAAATAATGTTCTCACCGACTATTTAAACTTTGAAGATATTGGAGCTACTGTCCTGGAAGAGGAAAATCGGCGTAGAAACAAAGTAGATAAGTTGGCGAGTTCGCAACAAGCAGAGGCTCTAGTGGTGACAAGAGGTAGATCAACGGAACTTGGCTCAAATGGGAGCCAAAATCAAGGAAAGGGCAAAATTAAGAACTGTGACGATCACGCCTTGAAGATTGTCAGTATTGGAACTATCAAGTTGAAGTTCCATGACAATACAGTTCGCACAATTCAAAAAGTGCAACATGTAGAAGGTCTGACAAAGAACTTCCTCTCGGTAGGTCAACTAGATAACCTTGATTGCAAGGTGATTGGGGAGAAAAGTATTATAAAGGTGATGTGA

Coding sequence (CDS)

ATGAAGGTTATCTTGAGAAAAGATAATTGCCTTGCAGCCATCAGTGCAAGGTCGGCGGATGTCACAGATGATAAGTGGAATAAGATGGAGGGGAATGCTGTTGCAAATCTTCATCTGGCTCTAGCAGATAAAGTGTTGTCAAGCATAGAGGGGAAGAAAACTACGAATGAGATTTGGGATCATCTCGAAAAGTTGTACGAGACCAGATCACTTCACAACAAGATTTTCCTTAAGAGGATATTGTATACTCTTCGGATGTCAGAATCTACTCCAATGACGGAGCACATCAACACGTTGAATACTCTATTTTCTCAACTCACATCATTGGGTTGTAAAATAGAGCCAAATGAATGTGCTGAACTTCTACTTCAAAGTCTTCCTGATTCGTATGATCAACTCGTCATCAACTTGACAAATAATGTTCTCACCGACTATTTAAACTTTGAAGATATTGGAGCTACTGTCCTGGAAGAGGAAAATCGGCGTAGAAACAAAGTAGATAAGTTGGCGAGTTCGCAACAAGCAGAGGCTCTAGTGGTGACAAGAGGTAGATCAACGGAACTTGGCTCAAATGGGAGCCAAAATCAAGGAAAGGGCAAAATTAAGAACTGTGACGATCACGCCTTGAAGATTGTCAGTATTGGAACTATCAAGTTGAAGTTCCATGACAATACAGTTCGCACAATTCAAAAAGTGCAACATGTAGAAGGTCTGACAAAGAACTTCCTCTCGGTAGGTCAACTAGATAACCTTGATTGCAAGGTGATTGGGGAGAAAAGTATTATAAAGGTGATGTGA

Protein sequence

MKVILRKDNCLAAISARSADVTDDKWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIWDHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECAELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALVVTRGRSTELGSNGSQNQGKGKIKNCDDHALKIVSIGTIKLKFHDNTVRTIQKVQHVEGLTKNFLSVGQLDNLDCKVIGEKSIIKVM

Homology

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BLAST of Moc09g13150 vs. NCBI nr
Match: KAA0026163.1 (Gag-Pol [Cucumis melo var. makuwa] >TYK11620.1 Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 6.7e-86
Identity = 187/329 (56.84%), Postives = 217/329 (65.96%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MKV+LR DNCL AI    A++TDD KWN+M+GNA+ N+HLALAD VLSSI+ KK   EIW
Sbjct: 22  MKVVLRNDNCLEAIDKGPAEITDDNKWNEMDGNAMENIHLALADNVLSSIKEKKIAKEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL KLYET+SLHNKIFLKR LYTLRMSEST MTEH+NTLNTLFSQL  LG KIEPNE A
Sbjct: 82  DHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNTLNTLFSQLALLGYKIEPNERA 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSL DSYDQLVINL NN+L DYL+F+D+ + VLEEENRR+NK DKL + QQAEAL 
Sbjct: 142 ELLLQSLLDSYDQLVINLKNNILIDYLSFDDVVSAVLEEENRRKNKEDKLITLQQAEALT 201

Query: 181 VTRGRSTELGSNGSQNQ-------------------------------GK---------- 240
           VTRGR  EL +   + Q                               GK          
Sbjct: 202 VTRGRPLELAAKIKEGQSHEKDSNPQGNVASTINEGGALSCEAVTTTEGKKRMADGWFFD 261

Query: 241 ----------------------GKIKNCDDHALKIVSIGTIKLKFHDNTVRTIQKVQHVE 266
                                 G + +C+DHALKIV IGTIKLK HDN V TIQ+V+HVE
Sbjct: 262 SGATYHMTSRREWFHNYKPISGGSLFSCNDHALKIVDIGTIKLKLHDNIVCTIQQVRHVE 321

[Close]

BLAST of Moc09g13150 vs. NCBI nr
Match: GEW42722.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerariifolium])

HSP 1 Score: 325.5 bits (833), Expect = 4.3e-85
Identity = 177/297 (59.60%), Postives = 213/297 (71.72%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDDKWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIWD 60
           MK ILRKD CLAAI  R ADVTDDKW +M+GNA++NLHLALAD VLSSIE K+T  EI D
Sbjct: 22  MKAILRKDKCLAAIGERPADVTDDKWEEMDGNAISNLHLALADGVLSSIEEKRTAKEICD 81

Query: 61  HLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECAE 120
           HL +LYETRSLHNKIFLKR LY LRM+EST +T+H+N LNTLFSQL SL C IEP E A+
Sbjct: 82  HLARLYETRSLHNKIFLKRKLYALRMTESTSVTKHVNNLNTLFSQLASLRCIIEPQERAK 141

Query: 121 LLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALVV 180
           +LLQSLPDSYDQL+I+LT NVLTD+L F+D+ A VLEE NRR N+ D+ ASS+Q EAL V
Sbjct: 142 ILLQSLPDSYDQLIISLTGNVLTDFLVFDDVAAAVLEEGNRRNNREDRQASSRQVEALAV 201

Query: 181 TRGRSTELGSNG-----SQNQGKGKIKN---------------------------CDDHA 240
           TR RS E GS+G     +  Q + +I N                           C+DH 
Sbjct: 202 TRERSIEPGSSGVITVVNLKQERRRILNASNVASKVILRKIVERLQMKAGRDLQICNDHE 261

Query: 241 LKIVSIGTIKLKFHDNTVRTIQKVQHVEGLTKNFLSVGQLDNLDCKVIGEKSIIKVM 266
           LKI+ IG++ +K HD TVRTIQ V+HVEGL KN LS+GQLD+L CKV  +  I+K++
Sbjct: 262 LKIIGIGSVMVKMHDGTVRTIQDVRHVEGLKKNLLSLGQLDDLGCKVKIQNKIMKII 318

[Close]

BLAST of Moc09g13150 vs. NCBI nr
Match: KAA0061179.1 (Gag-Pol [Cucumis melo var. makuwa] >TYK06231.1 Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 1.2e-82
Identity = 176/291 (60.48%), Postives = 199/291 (68.38%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MKV+LRKDNCL  +  R A++ DD KWN+M+GNA AN+HLALAD VLSSIE KKT  EIW
Sbjct: 22  MKVVLRKDNCLEVVDKRPAEIIDDSKWNEMDGNATANIHLALADNVLSSIEEKKTAKEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL KLY+ +SLHNKIFLKR LYTLRMSEST MTEH+N LNTLFSQLT L  KIEPNE A
Sbjct: 82  DHLTKLYKAKSLHNKIFLKRKLYTLRMSESTSMTEHMNILNTLFSQLTLLAYKIEPNERA 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSLPDSYDQLVINLTNN+LTDYL+F+D+ + VLEEENRR+NK DKL SSQQAEALV
Sbjct: 142 ELLLQSLPDSYDQLVINLTNNILTDYLSFDDVTSAVLEEENRRKNKEDKLVSSQQAEALV 201

Query: 181 VTRGRSTELGSNGSQNQGK----------------------------------------- 231
           VTRGRS+E  S+GS+NQG+                                         
Sbjct: 202 VTRGRSSECNSSGSKNQGRSKSRRNVASTINEGGALSCEAVTTMEGKKRMADGWFFDLGA 261

[Close]

BLAST of Moc09g13150 vs. NCBI nr
Match: KAE8713996.1 (hypothetical protein F3Y22_tig00110202pilonHSYRG00134 [Hibiscus syriacus])

HSP 1 Score: 316.6 bits (810), Expect = 2.0e-82
Identity = 168/265 (63.40%), Postives = 201/265 (75.85%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MK ILRKD CLA I+    D  DD KWN+M+GNA+AN +LALAD+VLSSIE KKT  EIW
Sbjct: 22  MKAILRKDGCLAVINEMPMDFADDNKWNEMDGNAMANFNLALADEVLSSIEEKKTAKEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL KL+E  SLHNKIFLKR LYTLRMSEST +T+H+NTLNTLFSQLTSL CKI   E A
Sbjct: 82  DHLTKLHEATSLHNKIFLKRKLYTLRMSESTSVTDHLNTLNTLFSQLTSLSCKIVEQERA 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSLPDSYDQL+INLTNN +T  L F+D+   VL+EENR +NK D+  + QQAEAL 
Sbjct: 142 ELLLQSLPDSYDQLIINLTNNNVTS-LVFDDVAVVVLQEENRHKNKEDRQVNLQQAEALT 201

Query: 181 VTRGRSTELGSNGSQNQGKGKIKNCDDHALKIVSIGTIKLKFHDNTVRTIQKVQHVEGLT 240
             RGRSTE G + S   G G + +C+DHAL+IV +GTIKLK +D T++ ++ V+H++GL 
Sbjct: 202 TMRGRSTERGQSSSHKHG-GSVYSCNDHALEIVGVGTIKLKMYDGTIKVVRDVRHLKGLK 261

Query: 241 KNFLSVGQLDNLDCKVIGEKSIIKV 265
           KN LS G LDN   K+   K IIKV
Sbjct: 262 KNLLSYGLLDNNASKIETRKGIIKV 284

[Close]

BLAST of Moc09g13150 vs. NCBI nr
Match: GEX02811.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 314.3 bits (804), Expect = 1.0e-81
Identity = 174/321 (54.21%), Postives = 208/321 (64.80%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MK ILRKD CLAAI  R A+V DD KW++M+ NA ANLHLA+AD VLSSIE KK+  EIW
Sbjct: 59  MKAILRKDKCLAAIGERPAEVMDDSKWDEMDRNAFANLHLAVADGVLSSIEEKKSAKEIW 118

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL +LYE RSLHNK FLKR +Y LRM+EST +TEH+N LNTL+SQLTSL CKI+  E A
Sbjct: 119 DHLARLYEARSLHNKFFLKRKIYALRMTESTSVTEHVNNLNTLYSQLTSLSCKIDSQERA 178

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           E+LLQSLPDSYDQ++INLTNNVL+DYL F+D+ A +LEEENRR N+ D+  SS+Q EALV
Sbjct: 179 EILLQSLPDSYDQVIINLTNNVLSDYLVFDDVAAAILEEENRRNNREDRQTSSRQVEALV 238

Query: 181 VTRGRSTELGSNGSQNQGK----------------------------------------- 240
           VTRGR    G N    QG                                          
Sbjct: 239 VTRGRKDCQGLNTYNTQGNIASTSEDGNALCCEAAIANENMKKFADVWLFDTGATFYMSA 298

Query: 241 --------------GKIKNCDDHALKIVSIGTIKLKFHDNTVRTIQKVQHVEGLTKNFLS 266
                         G I +C+DH LKI+ IG+I +K HD TV TIQ V+HVEGL KN LS
Sbjct: 299 RKEWFHQYKPISGGGSIYSCNDHELKIIGIGSIMVKMHDGTVHTIQDVRHVEGLKKNLLS 358

[Close]

BLAST of Moc09g13150 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 67/191 (35.08%), Postives = 103/191 (53.93%), Query Frame = 0


Query: 24  DKWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIWDHLEKLYETRSLHNKIFLKRILYT 83
           + W  ++  A + + L L+D V+++I  + T   IW  LE LY +++L NK++LK+ LY 
Sbjct: 50  EDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYA 109

Query: 84  LRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECAELLLQSLPDSYDQLVINLTNNVLT 143
           L MSE T    H+N  N L +QL +LG KIE  + A LLL SLP SYD L   + +   T
Sbjct: 110 LHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTT 169

Query: 144 DYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALVVT-RGRSTELGSNG---------S 203
             +  +D+ + +L  E  R+          Q +AL+   RGRS +  SN          S
Sbjct: 170 --IELKDVTSALLLNEKMRKK------PENQGQALITEGRGRSYQRSSNNYGRSGARGKS 229

Query: 204 QNQGKGKIKNC 205
           +N+ K +++NC
Sbjct: 230 KNRSKSRVRNC 232

[Close]

BLAST of Moc09g13150 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 41/164 (25.00%), Postives = 82/164 (50.00%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDDKWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIWD 60
           ++ +L + + L  +     +  DD W K E  A + +   L+D  L+      T  +I +
Sbjct: 23  IRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQILE 82

Query: 61  HLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECAE 120
           +L+ +YE +SL +++ L++ L +L++S    +  H +  + L S+L + G KIE  +   
Sbjct: 83  NLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKIS 142

Query: 121 LLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRN 165
            LL +LP  YD  +I     +  + L    +   +L++E + +N
Sbjct: 143 HLLITLPSCYDG-IITAIETLSEENLTLAFVKNRLLDQEIKIKN 185

[Close]

BLAST of Moc09g13150 vs. ExPASy TrEMBL
Match: A0A5A7SNG9 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00680 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.2e-86
Identity = 187/329 (56.84%), Postives = 217/329 (65.96%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MKV+LR DNCL AI    A++TDD KWN+M+GNA+ N+HLALAD VLSSI+ KK   EIW
Sbjct: 22  MKVVLRNDNCLEAIDKGPAEITDDNKWNEMDGNAMENIHLALADNVLSSIKEKKIAKEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL KLYET+SLHNKIFLKR LYTLRMSEST MTEH+NTLNTLFSQL  LG KIEPNE A
Sbjct: 82  DHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNTLNTLFSQLALLGYKIEPNERA 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSL DSYDQLVINL NN+L DYL+F+D+ + VLEEENRR+NK DKL + QQAEAL 
Sbjct: 142 ELLLQSLLDSYDQLVINLKNNILIDYLSFDDVVSAVLEEENRRKNKEDKLITLQQAEALT 201

Query: 181 VTRGRSTELGSNGSQNQ-------------------------------GK---------- 240
           VTRGR  EL +   + Q                               GK          
Sbjct: 202 VTRGRPLELAAKIKEGQSHEKDSNPQGNVASTINEGGALSCEAVTTTEGKKRMADGWFFD 261

Query: 241 ----------------------GKIKNCDDHALKIVSIGTIKLKFHDNTVRTIQKVQHVE 266
                                 G + +C+DHALKIV IGTIKLK HDN V TIQ+V+HVE
Sbjct: 262 SGATYHMTSRREWFHNYKPISGGSLFSCNDHALKIVDIGTIKLKLHDNIVCTIQQVRHVE 321

[Close]

BLAST of Moc09g13150 vs. ExPASy TrEMBL
Match: A0A5A7V644 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00020 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 5.7e-83
Identity = 176/291 (60.48%), Postives = 199/291 (68.38%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MKV+LRKDNCL  +  R A++ DD KWN+M+GNA AN+HLALAD VLSSIE KKT  EIW
Sbjct: 22  MKVVLRKDNCLEVVDKRPAEIIDDSKWNEMDGNATANIHLALADNVLSSIEEKKTAKEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL KLY+ +SLHNKIFLKR LYTLRMSEST MTEH+N LNTLFSQLT L  KIEPNE A
Sbjct: 82  DHLTKLYKAKSLHNKIFLKRKLYTLRMSESTSMTEHMNILNTLFSQLTLLAYKIEPNERA 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSLPDSYDQLVINLTNN+LTDYL+F+D+ + VLEEENRR+NK DKL SSQQAEALV
Sbjct: 142 ELLLQSLPDSYDQLVINLTNNILTDYLSFDDVTSAVLEEENRRKNKEDKLVSSQQAEALV 201

Query: 181 VTRGRSTELGSNGSQNQGK----------------------------------------- 231
           VTRGRS+E  S+GS+NQG+                                         
Sbjct: 202 VTRGRSSECNSSGSKNQGRSKSRRNVASTINEGGALSCEAVTTMEGKKRMADGWFFDLGA 261

[Close]

BLAST of Moc09g13150 vs. ExPASy TrEMBL
Match: A0A6A3BAP3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110202pilonHSYRG00134 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 9.7e-83
Identity = 168/265 (63.40%), Postives = 201/265 (75.85%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MK ILRKD CLA I+    D  DD KWN+M+GNA+AN +LALAD+VLSSIE KKT  EIW
Sbjct: 22  MKAILRKDGCLAVINEMPMDFADDNKWNEMDGNAMANFNLALADEVLSSIEEKKTAKEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL KL+E  SLHNKIFLKR LYTLRMSEST +T+H+NTLNTLFSQLTSL CKI   E A
Sbjct: 82  DHLTKLHEATSLHNKIFLKRKLYTLRMSESTSVTDHLNTLNTLFSQLTSLSCKIVEQERA 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSLPDSYDQL+INLTNN +T  L F+D+   VL+EENR +NK D+  + QQAEAL 
Sbjct: 142 ELLLQSLPDSYDQLIINLTNNNVTS-LVFDDVAVVVLQEENRHKNKEDRQVNLQQAEALT 201

Query: 181 VTRGRSTELGSNGSQNQGKGKIKNCDDHALKIVSIGTIKLKFHDNTVRTIQKVQHVEGLT 240
             RGRSTE G + S   G G + +C+DHAL+IV +GTIKLK +D T++ ++ V+H++GL 
Sbjct: 202 TMRGRSTERGQSSSHKHG-GSVYSCNDHALEIVGVGTIKLKMYDGTIKVVRDVRHLKGLK 261

Query: 241 KNFLSVGQLDNLDCKVIGEKSIIKV 265
           KN LS G LDN   K+   K IIKV
Sbjct: 262 KNLLSYGLLDNNASKIETRKGIIKV 284

[Close]

BLAST of Moc09g13150 vs. ExPASy TrEMBL
Match: A0A6A3AGK4 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110480pilonHSYRG00021 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.4e-81
Identity = 169/286 (59.09%), Postives = 202/286 (70.63%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           MK ILRKD CLAAIS R  D  DD KWN+M+GNA++N HLALAD+VLSSIE KKT  EIW
Sbjct: 22  MKAILRKDGCLAAISERPVDFIDDNKWNEMDGNAMSNFHLALADEVLSSIEEKKTAKEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL KLYE  SLHNKIFLKR LYTLRMSEST +TEH+NTLNTLFSQLTSL C I   E  
Sbjct: 82  DHLTKLYEVTSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSLRCTIGEQERV 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSLPDSYDQL+INLTN+ +T  + F+D+ A VL+EENRR+NK D+  + QQAEAL 
Sbjct: 142 ELLLQSLPDSYDQLIINLTNSNVTSIV-FDDVAAAVLQEENRRKNKEDRQVNLQQAEALT 201

Query: 181 VTRGRSTELGSNGSQNQGK---------------------GKIKNCDDHALKIVSIGTIK 240
             RGRS E G + S   G                      G + +C+DHAL+I+ +GTIK
Sbjct: 202 TMRGRSAERGQSSSHKHGNTANSSDDGDTLLCEASTTVEGGSVYSCNDHALEIIGVGTIK 261

Query: 241 LKFHDNTVRTIQKVQHVEGLTKNFLSVGQLDNLDCKVIGEKSIIKV 265
           LK +D T++ ++ V+HV+GL KN LS G LDN   K+   K I+KV
Sbjct: 262 LKMYDGTIKVVRDVRHVKGLKKNLLSYGLLDNNASKIETRKGIMKV 306

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BLAST of Moc09g13150 vs. ExPASy TrEMBL
Match: Q6BCY1 (Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.8e-81
Identity = 177/352 (50.28%), Postives = 216/352 (61.36%), Query Frame = 0


Query: 1   MKVILRKDNCLAAISARSADVTDD-KWNKMEGNAVANLHLALADKVLSSIEGKKTTNEIW 60
           +K ILRKDNCLAAIS R  D TDD KW++M  +A+A+L+L++AD VLSSIE KKT NEIW
Sbjct: 22  VKAILRKDNCLAAISERPVDFTDDKKWSEMNEDAMADLYLSIADGVLSSIEEKKTANEIW 81

Query: 61  DHLEKLYETRSLHNKIFLKRILYTLRMSESTPMTEHINTLNTLFSQLTSLGCKIEPNECA 120
           DHL +LYE +SLHNKIFLKR LYTLRMSEST +TEH+NTLNTLFSQLTSL CKIEP E A
Sbjct: 82  DHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSLSCKIEPQERA 141

Query: 121 ELLLQSLPDSYDQLVINLTNNVLTDYLNFEDIGATVLEEENRRRNKVDKLASSQQAEALV 180
           ELLLQSLPDSYDQL+INLTNN+LTDYL F+D+ A VLEEE+RR+NK D+  + QQAEAL 
Sbjct: 142 ELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKEDRQVNLQQAEALT 201

Query: 181 VTRGRSTELGSNGSQNQGK----------------------------------------- 240
           V RGRSTE G +  + + K                                         
Sbjct: 202 VMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKKGHLKKDCWNLAQNSNPQGNVASTSDDG 261

Query: 241 ----------------------------------------------GKIKNCDDHALKIV 265
                                                         G + +CDDHAL+I+
Sbjct: 262 SALCCEASIAREGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEII 321

The following BLAST results are available for this feature:

BLAST of Moc09g13150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026163.1	6.7e-86	56.84	Gag-Pol [Cucumis melo var. makuwa] >TYK11620.1 Gag-Pol [Cucumis melo var. makuwa...	[more]
GEW42722.1	4.3e-85	59.60	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerarii...	[more]
KAA0061179.1	1.2e-82	60.48	Gag-Pol [Cucumis melo var. makuwa] >TYK06231.1 Gag-Pol [Cucumis melo var. makuwa...	[more]
KAE8713996.1	2.0e-82	63.40	hypothetical protein F3Y22_tig00110202pilonHSYRG00134 [Hibiscus syriacus]	[more]
GEX02811.1	1.0e-81	54.21	hypothetical protein [Tanacetum cinerariifolium]	[more]

BLAST of Moc09g13150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-22	35.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.1e-09	25.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc09g13150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNG9	3.2e-86	56.84	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00680 PE=4 S...	[more]
A0A5A7V644	5.7e-83	60.48	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00020 PE=4 S...	[more]
A0A6A3BAP3	9.7e-83	63.40	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110202pilon...	[more]
A0A6A3AGK4	1.4e-81	59.09	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]
Q6BCY1	1.8e-81	50.28	Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1	[more]

BLAST of Moc09g13150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 26..164 e-value: 2.4E-33 score: 114.8
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..196
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g13150.1	Moc09g13150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0046914	transition metal ion binding