Moc08g34970 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g34970
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U1 small nuclear ribonucleoprotein A
Location	chr8: 25563039 .. 25569964 (+)
RNA-Seq Expression	Moc08g34970
Synteny	Moc08g34970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTTCTGGGCTTGAGGAGCAAAGCCCGGAGGTCGGCGGCATCTATCTCGTCGGAGCAGTTCTCCGGCCGGTAGAAGCCGGTGACCGGGTCAGGGACCCACGCCACCTTCTCTCTACTACTTCTTACTGCTTCTTCCTTCTTCATCACGCCGCCGCCTCTTGCCGGAAATCTTCCCGCCGCCGCGCTGGACGCCACTCCTTGTGACGCCGCCGCCGCCGCTGAATATTCACGCCTGCCAATCCCCACACGGCGTTAGAAACTCGGAATTAATAAGCTGATTCACAAAAATCCTTCTAGAATAATTATATTTTACAATTTTTAAAAATAAAATATAAATTTGGCTTAATTTAGTTCCTATTTTCGGGGTATAGTTTCAATTTTGTAGAATTATAAAAAGATTCACAAATCTTTTTATTAATACAAATTAAAATTTTAAAATCATAGAGTAGTCCAAATCTATAATTTGGAATCCGCATGATATGGTATTTATTGGAAAGAGAAAATTTTAATTCCTTTCACAAACTCAATAATTTTGGTAAATTCCTCCTCCAAATGTAAGGAAACGTTTTTAATTTTTTGCAAAATAATTTGAATAAAACTATTTTAATGGAAAGGAAGAGTCTATGTAACTTAAACGCATATTTGGTTAAAAAGATTACTCCAAACGGAGATATTGTATTATAGGGTAGAAATCTTAAATCTTGATAAGTGAGAACCTATATATCTTTTCTTGATTATCACTGGAAAAAATAATATAAAATTAAAATATACTATCAATTTTTCAATATGACAATTCTAAAGACTCTATTGAAATATAGAAAAAAAAAGGAGTTTTTATAATTTTGAAATACCTGAAGAGAGCGTTGGAGAGGAGAGCGGACATGTTCTTGAGGATGGAGAAAGAGGGAGCCATAGAATACCAATTTCTTATTTTCCGTTTGTTTCTCGGGAAAATTTTCGAAAGAGAAAGAGAAGGAAAATGGAAAGTGCTGTGTTGTGGAAGGGAAGAAACCGTGGGGATTTTATTTATATAGAGAGGAAGAATTAAGAAACCAGAGAGAAGTAGGAAATAGGAAGTGACGTGGAAAGTGGAAGCAGTCAAAGCGGACTGGAGGCGGGTTCGAACGTACACGTGTACGCCCCTGATTGTATATAATCTTGTAACAACAATAAAATGATGAATAAATAGATTCTAGAATTTGGAGTTCAATTTTGATTTAAATAAAAAAAAGTTAAATAACAAATTTAGTCTTTTAATTTAGATATAATTTTAATTTGGTATTTATAATTTTAAAAATTTTAATTGAATCCATCTAATTTAGTCAGTTTTAATAAGGGTGAAAAAAAATTATATATATTAAATTGAGTAAGTAAATTTACAATTTAACACAAATGAAATTATTAAATAGAGGTCTAATCAAAGCGGGCCACGTGTTGAAGAAATTGACGGCGGAGGTTTCCTTATAATTGGGAGGCGGCGAACGGGTCGTAGGTGGCGGAAAACAGTGGAGACAAGTCAAACGGGTCAAACTTTTCCTTCTAGAGGGGAGTGTGATTTTCAACTTTATAATTAATAGGTTAATAATAAATTTTATAAAATATTTAAATCTTATGTTAAATAAATTTTTTAACTTCCAATTTTGTATTTAGTAATTTATCGACCTATTTATAATTTTTAAAATTCATAAACGTGTTAGACACAAAATTAAAAAATTTATGATTTTATTAATGTGATCGACAAAATTGAAAGTTTATAATCTTATTAAACACGAACTTACAAATTTATGAATCAAATTTATAAATTAAAAATTATCTTCAATTTTATGACTAATAGATTCATGAACTTTAGAAAATGTTTAATAAATTCCTGAACTTTTAATTTTGTGTTAAATAGGTCTCTCCTTAGCAACAACCCATTCCAAATTTTTAAAATTTACGTACACATTTTTTATCTAATTTGATTTAATGTCGTATTATTTTAAAAATAAATTTAAATAAAAATATTATTTAAAAAAATCCGTCTATTTAGTCCCTAAAATTTGAGTTATCGAAAAGGAGGTGCCTCGACAAAATTGAATGTCATTTTTCAAACAATATTATTCCCGTAGTTACCCCTATTACTTATTAGCAGATATCTTGAAATCGGGTGGGCAGATTTACTGTAGAGCCCAAGAAGGGCAAGCTTGAAGGGACCAAGCCCACAATCATTGGCAGCCCATTGCTTCTTCTTCTTCCGCAGTTAGGGCTTCCGTTTCCAGTCACTGCCGGACCGACCAGACCTCTGCGAGCGGAGTGGCGTTGCATGTACCGGACCGAGCCGTCGTTATCCGAAATCGACCGCCGTTCCTTCGTTTCTGCCTTCGTTTCCTTGCCATTGGAGCCATTCTTTTCGGCCGACGGAGGTAAAAGAAATGGCGGAGGTCAACAACACTGTCAATGAAATTCCTCCGAACATGACCATCTACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGGTATTCTTAGGGGAGTAGCTTCTTTAATGGTTTGAAATGTGATGTGATTTTTTATTGTTTTACTCCTTGGTGAGAGCAGAATTGAAGAAGTCGCTGAACGCGGTTTTCTCACAGTTCGGGAAGATTCTGGAAGTATTGGCTTTCAAGACCTTGAAGCACAAAGGACAGGCTTGGGTTGTGTTCGACGAAGTCTCTTCCGCCACTAATGCGCTTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTACTAGCCTTTCCGATCGCGAGAATTTAATTTTGTTCGTTGAATTGCAGGTTAAGCACTTGAGATGAAGATTAGAGTTATTAGGTCTCGCTGTAAAAAGATGGTTATCGCTTCGTTCGTATGAGCACTAATTCGAGTCATGGTTGTGAATAATAGAGTACTGATACATTCTTCTGAGAAACGAAATGGGAATTGTGTTTGGATCATATTGCGTCTTAGACAGTTGAGACGTACTCAAACATGGCTGGTAAATAATGTGGTTTTGTTGATAATTCTTTGCTGATTTCATGTCGGTAAGGTTAAAGGACAATTCATTGCTTGGATGATCAAGCATGAAACACAATATGCCCTTACCAGGCAATCCTGAAGTGCTTACTTCCTAAATATATCACATTGCAGACGTTTATATTTTCTTCACCTGAGCTTTATGACATTGATAATATTTTGACACAAATCAGATAGTTGTCAAACTTGTCTTCTGCATATCTATTGAAAGCTCTGTATGTCTTGTTTGTCTACCTAGGTTTTATATCTTTTACAGTTAGTATTAAGTGCCAGCAATTTTTCATATCATTTGTTGCTCTGGTCAACTATTCGTCTTTTGTTACCTTGACAAAGTTTTTGGGGGTATAGTGCAATACTAAGCTAAATGTTGTTGCTTTGCAATCATGTAGAGGATACAATATGCAAAGACGAAGTCAGATGTAGTAGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGACATGAAGAGAAGGGTACTATTTTCTTTATTTTATATTTTACAAATTTAAATTCAAACAGGTTTGAATAGCTTGGTGTATGAAGATTTACTTGAGCATCTGATACTATATTTGAGTGTCGTTGCAACTTTTATACTTATTTCATTTTGTGTTATCTTTGTCAATGCGAAATGCTCTGCTATATTATTCTCTTATTTCTATTTGTACTTTGGATACCGCATATGACTAATGTTCAATTACAGTAAAGGAAAACGTTAAAAAACAGCATACTTGCGCAAGAAATCTACTAGTTATGTGGAATAATAAGCAGTTGTAATGTAATGCATGTATTTTATTCAAAGCTATTTGAGCAAGATCCAGGTCTTGGGGAAAGTAACTTTTTCAGAAAATGGAGGAAAATGTTGCCCTATTATTTTATGTAGCAGTGTTTTGATCAAGATCTTTACTTTATCTTAGGGAGGAAGAAAAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTCTCAATCCTGCCTTTTCTGGAGCATATGGTGCAACTGCGGTTAGTATCTCTATTTAATCTCTAAACTTTAGTTTTATATAAATTCATTTATTTTTTATTTTTCATTGCATAATGGTTTTTCACAATATATCCCTTTCTAACTTCAGTCTTGAGCCTTAGATACAATCTAAAAAGCACAGACACAGACATGAGACATGGATAAGACACAACACAGACATGTTAACATGATAATTTCTTAAAAAATATGAAACAGACACGTTGAGGACACATTCTGTATATTTTAAAATGTATGTATACTGTTATATTTAATAATTAAAAATAAATAGAAGGGTCAATTAAGAACCATCATGGGTGGCCCATTAGTCCAAAGGGCTAGGGTTAATTAAGAGGGAATGGGTTCAAACTCTATGATGGCTACCTACCTTTGGAATTAGTAATTTCTACGTATTTTCTGGTACCAAATGTTGTAAGGTCAGACAGTTGTCCTGGGAGATTAGTCCGAGGTGTGCGTAAACTGGCCCGGACTGTCAAGGATATAAAAAAAAATAGAAGGGTCAATTAAGACTCAAAAAGTTAGGTAAAATGTACTTCACTTAGAACACAAGTTAAGTAAATATCAAATAATCAGGAATAAAAGAATTCTGCTGAAGGAAAAGAAAAAATATCTGTTAGTTGTAACTTGTAGCTTGTTTTGTTATGCCTTTGTTTAGAAAAATATTAAAAAAAACAAAAACAAAAACCTGAAGGTGCTTTCTGTAGTGCGATTTGGCGACCTGCCACTTTCTCAATATGGATGCAATCCCGTTTAAAAGGAGGGCTTCTCTATTATAAACCTAATTGATTTCAAACAATTTGGACAAGAGAACTCCTTCAACCGAAGAAGACAAGTACCTTCTTTCTTCCTTAATTGGTTATTTCTTAGTAAGTTTGGGTCTCTCTCTCTGGAAGTTCAAGTTTTTGCTTTGTCTAATAGAAAGCTAGAAAGTACTTTTTTGTTTTAAGACAAAAACGCATTTTCTACCAACATGAGCTTAACTCAGCGGTAATCAAGAGGTCGTGAGGTCATGAGTTTGAATCTCCACATCTCCAATTGTTGTATTAAAAGGGGGAAAAAAAAAAGAAAGAAAAAAACGCAGTTTAGGAAAGCAAAGCTCCGACTCCCTAAAAAGCATCTGATACATTAGACATGTCTGAGGCATTGTAATATAACTCCTACTAAATACTGATATTCAGAGAAAGAGTGGCTTAACGGAAGTCTCCTCCAGCCGCTTAGAGAGTGTTGGTTCTCTCTCTATCCAGGACTTCCCAAAACAAACAAAACATAAACTTACACAACAAGATCTTAAAGTATATAAGGACCAGCTAACTAACTTTAAGGGGGTGAATTTTCTTCTTTACCCTACCTAACATAACATAAGTATTAATTATTGGAGGCCTCGCAGGTGTATTCGAAATTCGAAATTTGTTTGGCGTATCATACACGTGTCTGAATGAATCTGTGTTTGATGCGTGTCCACAAAACAGAGTGTTCATGCTTCTTTGGGATACCATATTTAGATTCTCCAACGTGGTCAATTAAGTATCATATTTTTCATCTGCCACTAATAAATGTATTCTAAGGGCTTGGTTGGCATGATGGCAAAATATAAGATCATAAAGAAATAAGAGGTAGAATTTCACTTTTAGAGTCAGAATTTTACTTTTTAAAAATAGTGCTTTCTCATCCTATTTCATTTCCCACTCTTTTCATTGCAAGAAGAACGATACATAATTTGTTTGTTATACCATGAAAATAGGAAGCATTTCATTCTTTTACTCCCTGCTGAGTTGGGAGAGTCGATTTTCAGTTTTCGTTATTGTTTTGAACTTTATCCACCTTTTATTTCCTTATACCCAGAGTGCGATAGAAATGAAGGAATATATATTGGGTGTTTATTTCCATTTATTGCTTTGGCATTTCATACATCGTGATTGTTAACAAACCCTTTGCCAATTGATTCAATGCTCTAATTGGTCGGACTTAGTGGGTAGCTTTTTGTCGAGTGTATGTACTCTTGTATGCTGTTACCAATTGAATATAGGATTTTAAGGCATCAAAACTTGGTCGGCTGTTATCATATTAGTAACTTTTGTACTGAATTCTTAAAATTATATGTTACCTAAAGAACACTCTTTCCTTTCCCTCTTCTGAAAATGGTGCAGCACTCTCAAGTATCTTATACAGGCGGAGTTATGGTGCCAGAGGCTCCTGCCCCACCAAATAGCATTTTGTTTGTACAGAATCTTCCTCACGAGACGACTCCGATGATGCTACAGATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGCATCGCATTTGTCGAGTACAGCGATGAGGTACAATCAACAGTTGCCATGCAAGCACTACAAGGTTTTAAGATGAACCCGCAAAATTCGATGTTGATAACCTATGCGAAGAAATAGAAAAACAGATCTTGGAATGCCACCTGCTGTCATTCGATGCTCAGTACAGGAGATTGTTTGTAAAATACTGTCATCTCATACTAGACAGAAATTTTACCCTGCGTATCCTAATTGTTATAATCATATCACTGATCTCAGATCCACGCAGCGGTTGCTATGATTTGCCTCGAACTCTCATAGTCGTAGTAAAGTTTGATTTTCATCGTTACATTTTGTTCTCATTTTCATAGAAGTATTTCCTACTAGTTATACTATAAAAATAGACTAAAAGCTTTTATAAGATATTTAAGAGCTTATGATGTTGAAATCTAATTTGCTTGAAACTCTATTTCACTGGACAGCAAGTTCTACAGGATACAACAATTCCACAGCAAAAGGAGCTGCAGCTGAAGTGTCTCATGGAGATATCCAGTAA

mRNA sequence

ATGTTTCTTCTGGGCTTGAGGAGCAAAGCCCGGAGGTCGGCGGCATCTATCTCGTCGGAGCAGTTCTCCGGCCGATTTACTGTAGAGCCCAAGAAGGGCAAGCTTGAAGGGACCAAGCCCACAATCATTGGCAGCCCATTGCTTCTTCTTCTTCCGCAGTTAGGGCTTCCGTTTCCAGTCACTGCCGGACCGACCAGACCTCTGCGAGCGGAGTGGCGTTGCATGTACCGGACCGAGCCGTCGTTATCCGAAATCGACCGCCGTTCCTTCGTTTCTGCCTTCGTTTCCTTGCCATTGGAGCCATTCTTTTCGGCCGACGGAGAATTGAAGAAGTCGCTGAACGCGGTTTTCTCACAGTTCGGGAAGATTCTGGAAGTATTGGCTTTCAAGACCTTGAAGCACAAAGGACAGGCTTGGGTTGTGTTCGACGAAGTCTCTTCCGCCACTAATGCGCTTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATACAATATGCAAAGACGAAGTCAGATGTAGTAGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGACATGAAGAGAAGGGGAGGAAGAAAAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTCTCAATCCTGCCTTTTCTGGAGCATATGGTGCAACTGCGCACTCTCAAGTATCTTATACAGGCGGAGTTATGGTGCCAGAGGCTCCTGCCCCACCAAATAGCATTTTGTTTGTACAGAATCTTCCTCACGAGACGACTCCGATGATGCTACAGATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGCATCGCATTTGTCGAGTACAGCGATGAGGTACAATCAACAGTTGCCATGCAAGCACTACAAGCAAGTTCTACAGGATACAACAATTCCACAGCAAAAGGAGCTGCAGCTGAAGTGTCTCATGGAGATATCCAGTAA

Coding sequence (CDS)

ATGTTTCTTCTGGGCTTGAGGAGCAAAGCCCGGAGGTCGGCGGCATCTATCTCGTCGGAGCAGTTCTCCGGCCGATTTACTGTAGAGCCCAAGAAGGGCAAGCTTGAAGGGACCAAGCCCACAATCATTGGCAGCCCATTGCTTCTTCTTCTTCCGCAGTTAGGGCTTCCGTTTCCAGTCACTGCCGGACCGACCAGACCTCTGCGAGCGGAGTGGCGTTGCATGTACCGGACCGAGCCGTCGTTATCCGAAATCGACCGCCGTTCCTTCGTTTCTGCCTTCGTTTCCTTGCCATTGGAGCCATTCTTTTCGGCCGACGGAGAATTGAAGAAGTCGCTGAACGCGGTTTTCTCACAGTTCGGGAAGATTCTGGAAGTATTGGCTTTCAAGACCTTGAAGCACAAAGGACAGGCTTGGGTTGTGTTCGACGAAGTCTCTTCCGCCACTAATGCGCTTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATACAATATGCAAAGACGAAGTCAGATGTAGTAGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGACATGAAGAGAAGGGGAGGAAGAAAAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTCTCAATCCTGCCTTTTCTGGAGCATATGGTGCAACTGCGCACTCTCAAGTATCTTATACAGGCGGAGTTATGGTGCCAGAGGCTCCTGCCCCACCAAATAGCATTTTGTTTGTACAGAATCTTCCTCACGAGACGACTCCGATGATGCTACAGATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGCATCGCATTTGTCGAGTACAGCGATGAGGTACAATCAACAGTTGCCATGCAAGCACTACAAGCAAGTTCTACAGGATACAACAATTCCACAGCAAAAGGAGCTGCAGCTGAAGTGTCTCATGGAGATATCCAGTAA

Protein sequence

MFLLGLRSKARRSAASISSEQFSGRFTVEPKKGKLEGTKPTIIGSPLLLLLPQLGLPFPVTAGPTRPLRAEWRCMYRTEPSLSEIDRRSFVSAFVSLPLEPFFSADGELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHSQVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQASSTGYNNSTAKGAAAEVSHGDIQ

Homology

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BLAST of Moc08g34970 vs. NCBI nr
Match: KAG6606957.1 (U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391.7 bits (1005), Expect = 6.1e-105
Identity = 201/217 (92.63%), Postives = 208/217 (95.85%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSDV++KSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMG+NPAF GAYGATAHS
Sbjct: 90  QYAKTKSDVISKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGMNPAFGGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRM+EAKPGIAFV
Sbjct: 150 QVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNSTA---KGAAAEV 322
           EY+DEVQSTVAMQALQASSTG N ST    K AAAEV
Sbjct: 210 EYADEVQSTVAMQALQASSTGCNKSTVQREKEAAAEV 246

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BLAST of Moc08g34970 vs. NCBI nr
Match: XP_022155307.1 (U1 small nuclear ribonucleoprotein A [Momordica charantia])

HSP 1 Score: 387.5 bits (994), Expect = 1.1e-103
Identity = 198/205 (96.59%), Postives = 198/205 (96.59%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS
Sbjct: 90  QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV
Sbjct: 150 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNS 313
           EYSDEVQSTVAMQALQ       NS
Sbjct: 210 EYSDEVQSTVAMQALQGFKMNPQNS 234

[Close]

BLAST of Moc08g34970 vs. NCBI nr
Match: KAA0044384.1 (U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 379.8 bits (974), Expect = 2.4e-101
Identity = 191/207 (92.27%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 106 DGELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPM 165
           + ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPM
Sbjct: 29  EAELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPM 88

Query: 166 RIQYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATA 225
           RIQYAKTKSD++AKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAF+GAYGATA
Sbjct: 89  RIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATA 148

Query: 226 HSQVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIA 285
           HSQV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIA
Sbjct: 149 HSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIA 208

Query: 286 FVEYSDEVQSTVAMQALQASSTGYNNS 313
           FVEY DEVQSTVAMQALQ       NS
Sbjct: 209 FVEYGDEVQSTVAMQALQGFKMNPQNS 235

[Close]

BLAST of Moc08g34970 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 4.1e-101
Identity = 191/205 (93.17%), Postives = 196/205 (95.61%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSD++AKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAF+GAYGATAHS
Sbjct: 90  QYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV
Sbjct: 150 QVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNS 313
           EY DEVQSTVAMQALQ       NS
Sbjct: 210 EYGDEVQSTVAMQALQGFKMNPQNS 234

[Close]

BLAST of Moc08g34970 vs. NCBI nr
Match: XP_011652939.1 (U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical protein Csa_014424 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 4.1e-101
Identity = 191/205 (93.17%), Postives = 197/205 (96.10%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSD++AKSDG+FVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAF+GAYGATAHS
Sbjct: 90  QYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV
Sbjct: 150 QVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNS 313
           EYSDEVQSTVAMQALQ       NS
Sbjct: 210 EYSDEVQSTVAMQALQGFKMNPQNS 234

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BLAST of Moc08g34970 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.5e-79
Identity = 153/202 (75.74%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILE+LAFKT KHKGQAWVVFD   SA+ A+ +M  FPFYDK MRI
Sbjct: 33  ELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEMRI 92

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKG---RKKKEQHDANQAGMGLNPAFSGAYGAT 227
           QYAKTKSDVVAK+DGTFVPREKRKRHEEKG   +KK + HD+ Q GM +N A+ G YGA 
Sbjct: 93  QYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAA 152

Query: 228 AH-SQVSYTGGVM--VPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAK 287
              SQV Y GG+   +PEAPAPPN+ILFVQNLPHETTPM+LQMLFCQY GFKEVRM+EAK
Sbjct: 153 PPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK 212

Query: 288 PGIAFVEYSDEVQSTVAMQALQ 304
           PGIAFVE++DE+QSTVAMQ LQ
Sbjct: 213 PGIAFVEFADEMQSTVAMQGLQ 234

[Close]

BLAST of Moc08g34970 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.7e-73
Identity = 145/201 (72.14%), Postives = 169/201 (84.08%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVF++V+SAT AL+ MQ FPF++KPMRI
Sbjct: 38  ELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRI 97

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKK---KEQHDANQAGMGLNPAFSGAYGAT 227
           QYAKTKSD++AK+DGTFVPRE+RKR++EK  KK   ++ HD +Q G+G+N A+ G YGA 
Sbjct: 98  QYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVN-AYPGVYGAP 157

Query: 228 AHSQVSYTGG--VMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP 287
             SQ+ + G   VM+PE    PN+ILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP
Sbjct: 158 PLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP 217

Query: 288 GIAFVEYSDEVQSTVAMQALQ 304
           GIAFVEY DE Q+T AM  LQ
Sbjct: 218 GIAFVEYGDEGQATAAMNHLQ 236

[Close]

BLAST of Moc08g34970 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.7e-73
Identity = 145/201 (72.14%), Postives = 169/201 (84.08%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVF++V+SAT AL+ MQ FPF++KPMRI
Sbjct: 38  ELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRI 97

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKK---KEQHDANQAGMGLNPAFSGAYGAT 227
           QYAKTKSD++AK+DGTFVPRE+RKR++EK  KK   ++ HD +Q G+G+N A+ G YGA 
Sbjct: 98  QYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVN-AYPGVYGAP 157

Query: 228 AHSQVSYTGG--VMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP 287
             SQ+ + G   VM+PE    PN+ILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP
Sbjct: 158 PLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP 217

Query: 288 GIAFVEYSDEVQSTVAMQALQ 304
           GIAFVEY DE Q+T AM  LQ
Sbjct: 218 GIAFVEYGDEGQATAAMNHLQ 236

[Close]

BLAST of Moc08g34970 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.1e-56
Identity = 113/196 (57.65%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++A +A+RQMQ FPFYDKPMR+
Sbjct: 25  ELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRL 84

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAK KSD +AK++GTFVP++K+++ EEK  +K+E  D+ +      P+   A G +A++
Sbjct: 85  QYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQRPNTANGPS---ANGPSANN 144

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
            V         +   PPN+ILF+QNLPHETT MMLQ+LF QYPGFKE+RM++AKPGIAFV
Sbjct: 145 GVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFV 204

Query: 288 EYSDEVQSTVAMQALQ 304
           EY D+VQ+++AMQ LQ
Sbjct: 205 EYEDDVQASIAMQPLQ 215

[Close]

BLAST of Moc08g34970 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 6.0e-55
Identity = 113/196 (57.65%), Postives = 145/196 (73.98%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRI
Sbjct: 25  ELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAK+KSD V K++G+FVP+EK+ + EEK  +K+   +  Q  M          GAT  +
Sbjct: 85  QYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQN 144

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
            +         +   PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RM+EAKPGIAFV
Sbjct: 145 GMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFV 204

Query: 288 EYSDEVQSTVAMQALQ 304
           EY D+VQS++AMQALQ
Sbjct: 205 EYEDDVQSSMAMQALQ 212

[Close]

BLAST of Moc08g34970 vs. ExPASy TrEMBL
Match: A0A6J1DP02 (U1 small nuclear ribonucleoprotein A OS=Momordica charantia OX=3673 GN=LOC111022440 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 5.5e-104
Identity = 198/205 (96.59%), Postives = 198/205 (96.59%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS
Sbjct: 90  QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV
Sbjct: 150 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNS 313
           EYSDEVQSTVAMQALQ       NS
Sbjct: 210 EYSDEVQSTVAMQALQGFKMNPQNS 234

[Close]

BLAST of Moc08g34970 vs. ExPASy TrEMBL
Match: A0A5A7TMM0 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001120 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 1.2e-101
Identity = 191/207 (92.27%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 106 DGELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPM 165
           + ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPM
Sbjct: 29  EAELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPM 88

Query: 166 RIQYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATA 225
           RIQYAKTKSD++AKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAF+GAYGATA
Sbjct: 89  RIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATA 148

Query: 226 HSQVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIA 285
           HSQV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIA
Sbjct: 149 HSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIA 208

Query: 286 FVEYSDEVQSTVAMQALQASSTGYNNS 313
           FVEY DEVQSTVAMQALQ       NS
Sbjct: 209 FVEYGDEVQSTVAMQALQGFKMNPQNS 235

[Close]

BLAST of Moc08g34970 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 2.0e-101
Identity = 191/205 (93.17%), Postives = 196/205 (95.61%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSD++AKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAF+GAYGATAHS
Sbjct: 90  QYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV
Sbjct: 150 QVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNS 313
           EY DEVQSTVAMQALQ       NS
Sbjct: 210 EYGDEVQSTVAMQALQGFKMNPQNS 234

[Close]

BLAST of Moc08g34970 vs. ExPASy TrEMBL
Match: A0A0A0KWK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 2.0e-101
Identity = 191/205 (93.17%), Postives = 197/205 (96.10%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSD++AKSDG+FVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAF+GAYGATAHS
Sbjct: 90  QYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV
Sbjct: 150 QVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNS 313
           EYSDEVQSTVAMQALQ       NS
Sbjct: 210 EYSDEVQSTVAMQALQGFKMNPQNS 234

[Close]

BLAST of Moc08g34970 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 2.0e-101
Identity = 191/205 (93.17%), Postives = 196/205 (95.61%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF+EVSSATNALRQMQGFPFYDKPMRI
Sbjct: 30  ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRI 89

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAKTKSD++AKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAF+GAYGATAHS
Sbjct: 90  QYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHS 149

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
           QV Y+GGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV
Sbjct: 150 QVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 209

Query: 288 EYSDEVQSTVAMQALQASSTGYNNS 313
           EY DEVQSTVAMQALQ       NS
Sbjct: 210 EYGDEVQSTVAMQALQGFKMNPQNS 234

[Close]

BLAST of Moc08g34970 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-80
Identity = 153/202 (75.74%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELKKSLNAVFSQFGKILE+LAFKT KHKGQAWVVFD   SA+ A+ +M  FPFYDK MRI
Sbjct: 33  ELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEMRI 92

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKG---RKKKEQHDANQAGMGLNPAFSGAYGAT 227
           QYAKTKSDVVAK+DGTFVPREKRKRHEEKG   +KK + HD+ Q GM +N A+ G YGA 
Sbjct: 93  QYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAA 152

Query: 228 AH-SQVSYTGGVM--VPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAK 287
              SQV Y GG+   +PEAPAPPN+ILFVQNLPHETTPM+LQMLFCQY GFKEVRM+EAK
Sbjct: 153 PPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK 212

Query: 288 PGIAFVEYSDEVQSTVAMQALQ 304
           PGIAFVE++DE+QSTVAMQ LQ
Sbjct: 213 PGIAFVEFADEMQSTVAMQGLQ 234

[Close]

BLAST of Moc08g34970 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 219.9 bits (559), Expect = 2.9e-57
Identity = 113/196 (57.65%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++A +A+RQMQ FPFYDKPMR+
Sbjct: 25  ELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRL 84

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAK KSD +AK++GTFVP++K+++ EEK  +K+E  D+ +      P+   A G +A++
Sbjct: 85  QYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQRPNTANGPS---ANGPSANN 144

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
            V         +   PPN+ILF+QNLPHETT MMLQ+LF QYPGFKE+RM++AKPGIAFV
Sbjct: 145 GVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFV 204

Query: 288 EYSDEVQSTVAMQALQ 304
           EY D+VQ+++AMQ LQ
Sbjct: 205 EYEDDVQASIAMQPLQ 215

[Close]

BLAST of Moc08g34970 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 216.1 bits (549), Expect = 4.2e-56
Identity = 113/196 (57.65%), Postives = 145/196 (73.98%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRI
Sbjct: 25  ELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAK+KSD V K++G+FVP+EK+ + EEK  +K+   +  Q  M          GAT  +
Sbjct: 85  QYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQN 144

Query: 228 QVSYTGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFV 287
            +         +   PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RM+EAKPGIAFV
Sbjct: 145 GMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFV 204

Query: 288 EYSDEVQSTVAMQALQ 304
           EY D+VQS++AMQALQ
Sbjct: 205 EYEDDVQSSMAMQALQ 212

[Close]

BLAST of Moc08g34970 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 216.1 bits (549), Expect = 4.2e-56
Identity = 116/201 (57.71%), Postives = 148/201 (73.63%), Query Frame = 0


Query: 108 ELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRI 167
           ELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRI
Sbjct: 25  ELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDVVAKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHS 227
           QYAK+KSD V K++G+FVP+EK+ + EEK  +K+   +  Q  M          GAT  +
Sbjct: 85  QYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQN 144

Query: 228 QVSYTGGVMVPEAPA-----PPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP 287
                 G+  P  P+     PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RM+EAKP
Sbjct: 145 ------GMPPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKP 204

Query: 288 GIAFVEYSDEVQSTVAMQALQ 304
           GIAFVEY D+VQS++AMQALQ
Sbjct: 205 GIAFVEYEDDVQSSMAMQALQ 211

[Close]

BLAST of Moc08g34970 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-51
Identity = 105/185 (56.76%), Postives = 136/185 (73.51%), Query Frame = 0


Query: 119 QFGKILEVLAFKTLKHKGQAWVVFDEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVVA 178
           +FG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRIQYAK+KSD V 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 179 KSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFSGAYGATAHSQVSYTGGVMVP 238
           K++G+FVP+EK+ + EEK  +K+   +  Q  M          GAT  + +         
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQNGMPVPPFQPSG 126

Query: 239 EAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVA 298
           +   PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++A
Sbjct: 127 QDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMA 183

Query: 299 MQALQ 304
           MQALQ
Sbjct: 187 MQALQ 183

The following BLAST results are available for this feature:

BLAST of Moc08g34970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606957.1	6.1e-105	92.63	U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022155307.1	1.1e-103	96.59	U1 small nuclear ribonucleoprotein A [Momordica charantia]	[more]
KAA0044384.1	2.4e-101	92.27	U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa]	[more]
XP_008454331.1	4.1e-101	93.17	PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm...	[more]
XP_011652939.1	4.1e-101	93.17	U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical ...	[more]

BLAST of Moc08g34970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39244	3.5e-79	75.74	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]
A2Y0J7	3.7e-73	72.14	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
Q0DKM4	3.7e-73	72.14	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
O22922	4.1e-56	57.65	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
Q8H1S6	6.0e-55	57.65	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]

BLAST of Moc08g34970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DP02	5.5e-104	96.59	U1 small nuclear ribonucleoprotein A OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7TMM0	1.2e-101	92.27	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3E0R3	2.0e-101	93.17	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KWK4	2.0e-101	93.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1	[more]
A0A1S3BYG3	2.0e-101	93.17	U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=...	[more]

BLAST of Moc08g34970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47580.1	2.5e-80	75.74	spliceosomal protein U1A	[more]
AT2G30260.1	2.9e-57	57.65	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.1	4.2e-56	57.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	4.2e-56	57.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.3	1.1e-51	56.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 247..315 e-value: 6.0E-7 score: 39.1 coord: 92..168 e-value: 1.9E-7 score: 40.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 248..304 e-value: 2.5E-11 score: 43.2 coord: 111..165 e-value: 2.6E-8 score: 33.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..172 score: 11.792842
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 246..326 score: 10.513687
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 235..314 e-value: 5.6E-16 score: 60.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 101..192 e-value: 6.9E-23 score: 82.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..209
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 108..305
None	No IPR available	PANTHER	PTHR10501:SF46	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 108..305
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 108..171 e-value: 9.71758E-40 score: 132.652
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 244..303 e-value: 2.26249E-33 score: 116.129
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 112..303

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g34970.1	Moc08g34970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0003676	nucleic acid binding