Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTTTTTAGTGCAAGCGAGCTCGGAAGATTTGGCATACTCTTTTTCCACTCTCTACCTAAGTACCCTGCACATTCAAATCCAAGCTTCTTTGATTTTTGGGATGATCTGATCAATAAAATTAACCCAGATAAGAAGGAGTTAGCGGCGATTACCTGTTGGCCAATTTGGTGTGATCGAAATTCAACGGTTCATGGGAAGCAAATTTCTGTACCTGAATCAAAATGTGAGTGGATTCGATCTTATATTAAAAGCTTTTCACAGGCTAAAAATGCCATTTCCCCGCCCGTGCCAGAGACTAGAAGAACTCACCATAGCCAGATTTGGAATCCTCCGTGTGACGGCCATTTGAAGCTCAATACAGATGCTGCATGTAGACCTTCTTCATCAGGTCTGGGATTTCTCTTGCACAAGTCCGATGGCACTTTGGTAGCGGCCAAATCGGTTTTCCTTCCTCAATCCCTTCCACCACTTATTGCTGAAATTAAAGGAATTCTATAA
mRNA sequence
ATGCGATTTTTTAGTGCAAGCGAGCTCGGAAGATTTGGCATACTCTTTTTCCACTCTCTACCTAAGTACCCTGCACATTCAAATCCAAGCTTCTTTGATTTTTGGGATGATCTGATCAATAAAATTAACCCAGATAAGAAGGAGTTAGCGGCGATTACCTGTTGGCCAATTTGGTGTGATCGAAATTCAACGGTTCATGGGAAGCAAATTTCTGTACCTGAATCAAAATGTGAGTGGATTCGATCTTATATTAAAAGCTTTTCACAGGCTAAAAATGCCATTTCCCCGCCCGTGCCAGAGACTAGAAGAACTCACCATAGCCAGATTTGGAATCCTCCGTGTGACGGCCATTTGAAGCTCAATACAGATGCTGCATGTAGACCTTCTTCATCAGGTCTGGGATTTCTCTTGCACAAGTCCGATGGCACTTTGGTAGCGGCCAAATCGGTTTTCCTTCCTCAATCCCTTCCACCACTTATTGCTGAAATTAAAGGAATTCTATAA
Coding sequence (CDS)
ATGCGATTTTTTAGTGCAAGCGAGCTCGGAAGATTTGGCATACTCTTTTTCCACTCTCTACCTAAGTACCCTGCACATTCAAATCCAAGCTTCTTTGATTTTTGGGATGATCTGATCAATAAAATTAACCCAGATAAGAAGGAGTTAGCGGCGATTACCTGTTGGCCAATTTGGTGTGATCGAAATTCAACGGTTCATGGGAAGCAAATTTCTGTACCTGAATCAAAATGTGAGTGGATTCGATCTTATATTAAAAGCTTTTCACAGGCTAAAAATGCCATTTCCCCGCCCGTGCCAGAGACTAGAAGAACTCACCATAGCCAGATTTGGAATCCTCCGTGTGACGGCCATTTGAAGCTCAATACAGATGCTGCATGTAGACCTTCTTCATCAGGTCTGGGATTTCTCTTGCACAAGTCCGATGGCACTTTGGTAGCGGCCAAATCGGTTTTCCTTCCTCAATCCCTTCCACCACTTATTGCTGAAATTAAAGGAATTCTATAA
Protein sequence
MRFFSASELGRFGILFFHSLPKYPAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRNSTVHGKQISVPESKCEWIRSYIKSFSQAKNAISPPVPETRRTHHSQIWNPPCDGHLKLNTDAACRPSSSGLGFLLHKSDGTLVAAKSVFLPQSLPPLIAEIKGIL
Homology
BLAST of Moc08g21840 vs. NCBI nr
Match:
XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])
HSP 1 Score: 149.1 bits (375), Expect = 3.5e-32
Identity = 76/160 (47.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query: 15 LFFHSLPKYPAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRNSTVHGKQISVPE 74
L F SL P + N SF D W L +K+NP +++LAA T W IWCDRNS HG +S P
Sbjct: 20 LMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPA 79
Query: 75 SKCEWIRSYIKSFSQAK--NAISP-----PVPETRRTHHSQIWNPPCDGHLKLNTDAACR 134
+C WI SY +++SQA+ ISP P P R W PP D +K+N+DAACR
Sbjct: 80 LRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCR-------WLPPRDSAMKVNSDAACR 139
Query: 135 PSSSGLGFLLHKSDGTLVAAKSVFLPQSLPPLIAEIKGIL 168
+S+GLG ++ G L+ AKS+FLP L PL AEI+GIL
Sbjct: 140 STSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGIL 172
BLAST of Moc08g21840 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 128.6 bits (322), Expect = 4.9e-26
Identity = 68/165 (41.21%), Postives = 90/165 (54.55%), Query Frame = 0
Query: 3 FFSASELGRFGILFFHSLPKYPAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRN 62
FF + F L A N SF + W L ++ P LAAIT W IW DRN
Sbjct: 1187 FFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRN 1246
Query: 63 STVHGKQISVPESKCEWIRSYIKSFSQAKNAISPPVPETRRTHHSQIWNPPCDGHLKLNT 122
S +HGKQ+S E KCEW+ ++ S SQA+ + P ++ Q W P LKLNT
Sbjct: 1247 SLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLNT 1306
Query: 123 DAACRPSSSGLGFLLHKSDGTLVAAKSVFLPQSLPPLIAEIKGIL 168
DAACR +S+ G ++ S +LVAA S+ +P L PL+AEI+ IL
Sbjct: 1307 DAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCIL 1351
BLAST of Moc08g21840 vs. NCBI nr
Match:
XP_020249520.1 (uncharacterized protein LOC109826918 [Asparagus officinalis])
HSP 1 Score: 79.0 bits (193), Expect = 4.4e-11
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 0
Query: 24 PAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRNSTVHGKQISVPESKCEWIRSY 83
P + P+F D+++ ++ L A+TCW IW +RN V + +S SK WI
Sbjct: 16 PLPTAPNFKDWFNAMLQN-QQQNLALIAMTCWAIWNNRNEIV-WQALSFTVSKALWIACN 75
Query: 84 IKSFSQAKNAISPPVPETRRTHHSQIWNPPCDGHLKLNTDAA--CRPSSSGLGFLLHKSD 143
+ + +N + P +T ++ W+PP G KLN DAA GLGF++
Sbjct: 76 LLEQWRKENVVPPLATSETKTANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQ 135
Query: 144 GTLVAAKSVFLPQSLPPLIAEIKGI 167
G+ VAA++ + + P +AE G+
Sbjct: 136 GSFVAARATQVHGIIDPALAEALGV 158
BLAST of Moc08g21840 vs. NCBI nr
Match:
XP_023897447.1 (uncharacterized protein LOC112009345 [Quercus suber])
HSP 1 Score: 78.2 bits (191), Expect = 7.6e-11
Identity = 50/169 (29.59%), Postives = 74/169 (43.79%), Query Frame = 0
Query: 4 FSASELGRFGILFFHSLPKYPAHSNPSFFDFWDDLIN------KINPDKKELAAITCWPI 63
FS R + + + A SN FW L + + +K L W
Sbjct: 873 FSVRSAYRVAMGLYQAENAVSASSNSQLQSFWKKLWHLPVPHKSFDEEKIILVVTVAWAF 932
Query: 64 WCDRNSTVHGKQISVPESKCEWIRSYIKSFSQAKNAISPPVPETRRTHHSQIWNPPCDGH 123
WC+RN HG + PE+ +W+ Y+ +S A ++ P V R S WNPP
Sbjct: 933 WCNRNEIRHGAEKKSPEAIVQWVNRYLLEYSAATESV-PAV----REEVSVTWNPPPPSI 992
Query: 124 LKLNTDAACRPSSS--GLGFLLHKSDGTLVAAKSVFLPQSLPPLIAEIK 165
LK+N D A + + G+G ++ G +VAA S +P L PL E+K
Sbjct: 993 LKVNVDGATTKNLNFVGVGAVVRDEQGRVVAAMSRKIPAPLGPLEVEVK 1036
BLAST of Moc08g21840 vs. NCBI nr
Match:
XP_012852581.1 (PREDICTED: uncharacterized protein LOC105972189 [Erythranthe guttata])
HSP 1 Score: 77.8 bits (190), Expect = 9.9e-11
Identity = 41/124 (33.06%), Postives = 62/124 (50.00%), Query Frame = 0
Query: 24 PAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRNSTVHGKQISVPESKCEWIRSY 83
P N SF+++ D L +++PDK LA + CW +W RN +H + E W +Y
Sbjct: 16 PIAENLSFWNWLDILKRELDPDKLHLAIVVCWKLWERRNKIIHQEDFINLEDMVGWCAAY 75
Query: 84 IKSFSQAKNAISPPVPETRRTHHSQIWNPPCDGHLKLNTDAACRPSSS--GLGFLLHKSD 143
++++ A+ + RR SQ W PP G LKLN DAA P+S + + +
Sbjct: 76 LRTYDDAQLQHN----NVRRPEFSQTWTPPPIGVLKLNVDAAFPPNSEFHRVSLIARNAT 135
Query: 144 GTLV 146
GT V
Sbjct: 136 GTCV 135
BLAST of Moc08g21840 vs. ExPASy TrEMBL
Match:
A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 76/160 (47.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query: 15 LFFHSLPKYPAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRNSTVHGKQISVPE 74
L F SL P + N SF D W L +K+NP +++LAA T W IWCDRNS HG +S P
Sbjct: 20 LMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPA 79
Query: 75 SKCEWIRSYIKSFSQAK--NAISP-----PVPETRRTHHSQIWNPPCDGHLKLNTDAACR 134
+C WI SY +++SQA+ ISP P P R W PP D +K+N+DAACR
Sbjct: 80 LRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCR-------WLPPRDSAMKVNSDAACR 139
Query: 135 PSSSGLGFLLHKSDGTLVAAKSVFLPQSLPPLIAEIKGIL 168
+S+GLG ++ G L+ AKS+FLP L PL AEI+GIL
Sbjct: 140 STSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGIL 172
BLAST of Moc08g21840 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 2.4e-26
Identity = 68/165 (41.21%), Postives = 90/165 (54.55%), Query Frame = 0
Query: 3 FFSASELGRFGILFFHSLPKYPAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRN 62
FF + F L A N SF + W L ++ P LAAIT W IW DRN
Sbjct: 1187 FFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRN 1246
Query: 63 STVHGKQISVPESKCEWIRSYIKSFSQAKNAISPPVPETRRTHHSQIWNPPCDGHLKLNT 122
S +HGKQ+S E KCEW+ ++ S SQA+ + P ++ Q W P LKLNT
Sbjct: 1247 SLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLNT 1306
Query: 123 DAACRPSSSGLGFLLHKSDGTLVAAKSVFLPQSLPPLIAEIKGIL 168
DAACR +S+ G ++ S +LVAA S+ +P L PL+AEI+ IL
Sbjct: 1307 DAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCIL 1351
BLAST of Moc08g21840 vs. ExPASy TrEMBL
Match:
A0A5P1EPS3 (RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F5270 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 0
Query: 24 PAHSNPSFFDFWDDLINKINPDKKELAAITCWPIWCDRNSTVHGKQISVPESKCEWIRSY 83
P + P+F D+++ ++ L A+TCW IW +RN V + S SK WI
Sbjct: 22 PLPTAPNFKDWFNAMLQN-QQQNLALIAMTCWAIWNNRNEIVWQAR-SFTVSKALWIACN 81
Query: 84 IKSFSQAKNAISPPVPETRRTHHSQIWNPPCDGHLKLNTDAA--CRPSSSGLGFLLHKSD 143
+ + +N + P T ++ W+PP G KLN DAA GLGF++
Sbjct: 82 LLEQWRKENVVPPLATGETETANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQ 141
Query: 144 GTLVAAKSVFLPQSLPPLIAEIKGI 167
G+ VAA++ + + P +AE G+
Sbjct: 142 GSFVAARATQVHGIIDPALAEALGV 164
BLAST of Moc08g21840 vs. ExPASy TrEMBL
Match:
A0A5P1E8M9 (RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F18610 PE=4 SV=1)
HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 40/120 (33.33%), Postives = 61/120 (50.83%), Query Frame = 0
Query: 49 LAAITCWPIWCDRNSTVHGKQISVPESKCEWIRSYIKSFSQAKNAISPPVPETRRTHHSQ 108
L A+TCW IW +RN V + +S SK WI + + +N + P +T ++
Sbjct: 11 LIAMTCWAIWNNRNEIV-WQALSFTVSKALWIACNLLEQWRKENVVPPLATSETKTANNS 70
Query: 109 IWNPPCDGHLKLNTDAA--CRPSSSGLGFLLHKSDGTLVAAKSVFLPQSLPPLIAEIKGI 167
W+PP G KLN DAA GLGF++ G+ VAA++ + + P +AE G+
Sbjct: 71 KWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFVAARATQVHGIIDPALAEALGV 129
BLAST of Moc08g21840 vs. ExPASy TrEMBL
Match:
A0A5P1FW40 (RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F28990 PE=4 SV=1)
HSP 1 Score: 73.9 bits (180), Expect = 6.9e-10
Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 0
Query: 32 FDFWDDLINKINPDKKELAAITCWPIWCDRNSTVHGKQISVPESKCEWIRSYIKSFSQAK 91
F W + + + L A+TCW IW +RN V + S SK WI + + +
Sbjct: 29 FKGWFNAMLQNQQQNLALIAMTCWAIWNNRNEIVWQAR-SFTVSKALWIACNLLEQWRKE 88
Query: 92 NAISPPVPETRRTHHSQIWNPPCDGHLKLNTDAA--CRPSSSGLGFLLHKSDGTLVAAKS 151
N + P T ++ W+PP G KLN DAA GLGF++ G+ VAA++
Sbjct: 89 NVVPPLATSETETANNSKWSPPAAGKFKLNVDAAVFTNQRKCGLGFIIRDDQGSFVAARA 148
Query: 152 VFLPQSLPPLIAEIKGI 167
+ + P +AE G+
Sbjct: 149 TQVHGIIDPALAEALGV 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1BQ49 | 1.7e-32 | 47.50 | uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004... | [more] |
A0A6J1DX30 | 2.4e-26 | 41.21 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A5P1EPS3 | 1.8e-10 | 30.34 | RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F... | [more] |
A0A5P1E8M9 | 4.1e-10 | 33.33 | RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F... | [more] |
A0A5P1FW40 | 6.9e-10 | 30.66 | RNase H domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F... | [more] |
Match Name | E-value | Identity | Description | |