Moc08g16730 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g16730
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag-pro-like protein
Locationchr8: 12851965 .. 12852489 (-)
RNA-Seq ExpressionMoc08g16730
SyntenyMoc08g16730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCCCCTATAGTCCTTAATCTTGGTGGTCTCCCAGTCAAGACAGACCCAGTCGGACAAAGTGCCCCCAGTAATGAGAAGTTTGAAGTTCTAGAGGAAAGGTTAAGAGCAGTAGAGGGGACATATGTTTTTGGCAATATTGATGCCTCTCAATTGTGTTTGGTCTCTGGATTAGTCCTCCCTCCAAAATTTAACGTACCAGAATTCGAGAAATATGATGGTTCTTTTTGTCCTAAGAACCACCTTATAATGCACTGCAGGAATAAGACACCGTACGTCCAAAATGACAAACTGTTGATACACTACTTTTAAGATAGTCTATCTGGTCCAGCTTCTCGTTGATACATGCCGTTAGATAACTCGCATGTCGATTCATGGAAGAATCTAGCTGATTCTTTCCTAAAGCAATATAAGCATAACATAGATATGGCTCCAGACTGTTTAGATTTACAAATAATGGAGAAGAAGAGTACAGAAAGCTTTAAGGAATACGCCCAAAGATGGAGGGACACGGCAGCTTAG

mRNA sequence

ATGTCACCCCCTATAGTCCTTAATCTTGGTGGTCTCCCAGTCAAGACAGACCCAGTCGGACAAAGTGCCCCCAGTAATGAGAAGTTTGAAGTTCTAGAGGAAAGGTTAAGAGCAGTAGAGGGGACATATGTTTTTGGCAATATTGATGCCTCTCAATTGTGTTTGGTCTCTGGATTAGTCCTCCCTCCAAAATTTAACGTACCAGAATTCGAGAAATATGATGATAACTCGCATGTCGATTCATGGAAGAATCTAGCTGATTCTTTCCTAAAGCAATATAAGCATAACATAGATATGGCTCCAGACTGTTTAGATTTACAAATAATGGAGAAGAAGAGTACAGAAAGCTTTAAGGAATACGCCCAAAGATGGAGGGACACGGCAGCTTAG

Coding sequence (CDS)

ATGTCACCCCCTATAGTCCTTAATCTTGGTGGTCTCCCAGTCAAGACAGACCCAGTCGGACAAAGTGCCCCCAGTAATGAGAAGTTTGAAGTTCTAGAGGAAAGGTTAAGAGCAGTAGAGGGGACATATGTTTTTGGCAATATTGATGCCTCTCAATTGTGTTTGGTCTCTGGATTAGTCCTCCCTCCAAAATTTAACGTACCAGAATTCGAGAAATATGATGATAACTCGCATGTCGATTCATGGAAGAATCTAGCTGATTCTTTCCTAAAGCAATATAAGCATAACATAGATATGGCTCCAGACTGTTTAGATTTACAAATAATGGAGAAGAAGAGTACAGAAAGCTTTAAGGAATACGCCCAAAGATGGAGGGACACGGCAGCTTAG

Protein sequence

MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLVLPPKFNVPEFEKYDDNSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA
Homology
[Close]
BLAST of Moc08g16730 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 117/174 (67.24%), Postives = 122/174 (70.11%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           MSPP VLNLGGLP KTD VGQ+APSNEKFEVLEERLRA+EGTYVFGNIDASQLCLVSGLV
Sbjct: 2   MSPPTVLNLGGLPAKTDLVGQNAPSNEKFEVLEERLRAIEGTYVFGNIDASQLCLVSGLV 61

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPKF VPEFEKYD                                             D
Sbjct: 62  IPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQLD 121

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           +S+V SWKNLADSFLKQYKHNIDMAPD LDLQ MEKKSTESFKEYAQRWRDTAA
Sbjct: 122 SSNVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAA 175

[Close]
BLAST of Moc08g16730 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.4e-49
Identity = 111/174 (63.79%), Postives = 115/174 (66.09%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           MSPP V NLGG P KTDPV Q+A S EK EVLEERLRA+EGT VFGNIDASQLCLVSGLV
Sbjct: 111 MSPPTVXNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLV 170

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPKF VPEFEKYD                                             D
Sbjct: 171 IPPKFKVPEFEKYDGSSCPKNHLIMYCRKMXAYVQNXKLLIHCFQDSLXGXASRWYMQLD 230

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           +SHV SWKNLADSFLKQYKHNIDMAPD LDLQ MEK STESFKEYAQRWRDTAA
Sbjct: 231 SSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKNSTESFKEYAQRWRDTAA 284

[Close]
BLAST of Moc08g16730 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-48
Identity = 110/174 (63.22%), Postives = 117/174 (67.24%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           MSPP VLNLG L  KTDPVGQ+APSNEKFEVL+ERLRA+E T VFGNIDASQLC VSGLV
Sbjct: 42  MSPPTVLNLGDLLAKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGLV 101

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPK  VPEFEKY+                                             D
Sbjct: 102 IPPKLKVPEFEKYNGSSCPKNHLXMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQLD 161

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           +SHV SWKNLADSFLKQYKHNIDMAPD LDLQ MEKKST+SFKEYAQRWRDTAA
Sbjct: 162 SSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAA 215

[Close]
BLAST of Moc08g16730 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 108/165 (65.45%), Postives = 113/165 (68.48%), Query Frame = 0 

Query: 10  GGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLVLPPKFNVPE 69
           GGLP KTDPVGQ+APSNEKFEVL+ERLRA+EGT VFGNIDASQLCLVS LV+PPKF VPE
Sbjct: 62  GGLPAKTDPVGQNAPSNEKFEVLKERLRAIEGTDVFGNIDASQLCLVSRLVIPPKFKVPE 121

Query: 70  FEKYD---------------------------------------------DNSHVDSWKN 129
           FEKYD                                             D+SHV SWKN
Sbjct: 122 FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSSPASRWYMQLDSSHVGSWKN 181

[Close]
BLAST of Moc08g16730 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-43
Identity = 100/174 (57.47%), Postives = 108/174 (62.07%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           ++PP VLNLGG     DP  Q APS+EK EVLEERLRAVEGT VFGNIDASQLCL SGLV
Sbjct: 115 IAPPTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLV 174

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPKF +PEFEKY+                                             D
Sbjct: 175 IPPKFKIPEFEKYBGSSCPKNHLIMYCRKMAAYIQNDKLLIHCFQDSLSGPXSXWYMHLD 234

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           + HV SWKNLADSFLKQYKHNIDM  D LDLQ MEKK+ ESFKEY QRWRDTAA
Sbjct: 235 SXHVXSWKNLADSFLKQYKHNIDMXXDRLDLQXMEKKTXESFKEYXQRWRDTAA 288

[Close]
BLAST of Moc08g16730 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.0e-54
Identity = 117/174 (67.24%), Postives = 122/174 (70.11%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           MSPP VLNLGGLP KTD VGQ+APSNEKFEVLEERLRA+EGTYVFGNIDASQLCLVSGLV
Sbjct: 2   MSPPTVLNLGGLPAKTDLVGQNAPSNEKFEVLEERLRAIEGTYVFGNIDASQLCLVSGLV 61

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPKF VPEFEKYD                                             D
Sbjct: 62  IPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQLD 121

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           +S+V SWKNLADSFLKQYKHNIDMAPD LDLQ MEKKSTESFKEYAQRWRDTAA
Sbjct: 122 SSNVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAA 175

[Close]
BLAST of Moc08g16730 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 111/174 (63.79%), Postives = 115/174 (66.09%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           MSPP V NLGG P KTDPV Q+A S EK EVLEERLRA+EGT VFGNIDASQLCLVSGLV
Sbjct: 111 MSPPTVXNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLV 170

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPKF VPEFEKYD                                             D
Sbjct: 171 IPPKFKVPEFEKYDGSSCPKNHLIMYCRKMXAYVQNXKLLIHCFQDSLXGXASRWYMQLD 230

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           +SHV SWKNLADSFLKQYKHNIDMAPD LDLQ MEK STESFKEYAQRWRDTAA
Sbjct: 231 SSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKNSTESFKEYAQRWRDTAA 284

[Close]
BLAST of Moc08g16730 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.8e-49
Identity = 110/174 (63.22%), Postives = 117/174 (67.24%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           MSPP VLNLG L  KTDPVGQ+APSNEKFEVL+ERLRA+E T VFGNIDASQLC VSGLV
Sbjct: 42  MSPPTVLNLGDLLAKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGLV 101

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPK  VPEFEKY+                                             D
Sbjct: 102 IPPKLKVPEFEKYNGSSCPKNHLXMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQLD 161

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           +SHV SWKNLADSFLKQYKHNIDMAPD LDLQ MEKKST+SFKEYAQRWRDTAA
Sbjct: 162 SSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAA 215

[Close]
BLAST of Moc08g16730 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.6e-49
Identity = 108/165 (65.45%), Postives = 113/165 (68.48%), Query Frame = 0 

Query: 10  GGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLVLPPKFNVPE 69
           GGLP KTDPVGQ+APSNEKFEVL+ERLRA+EGT VFGNIDASQLCLVS LV+PPKF VPE
Sbjct: 62  GGLPAKTDPVGQNAPSNEKFEVLKERLRAIEGTDVFGNIDASQLCLVSRLVIPPKFKVPE 121

Query: 70  FEKYD---------------------------------------------DNSHVDSWKN 129
           FEKYD                                             D+SHV SWKN
Sbjct: 122 FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSSPASRWYMQLDSSHVGSWKN 181

[Close]
BLAST of Moc08g16730 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.4e-44
Identity = 101/174 (58.05%), Postives = 108/174 (62.07%), Query Frame = 0 

Query: 1   MSPPIVLNLGGLPVKTDPVGQSAPSNEKFEVLEERLRAVEGTYVFGNIDASQLCLVSGLV 60
           ++PP VLNLGG     DP  Q APS+EK EVLEERLRAVEGT VFGNIDASQLCL SGLV
Sbjct: 115 IAPPTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLV 174

Query: 61  LPPKFNVPEFEKYD---------------------------------------------D 120
           +PPKF +PEFEKYD                                             D
Sbjct: 175 IPPKFKIPEFEKYDGSSCPKNHLIMYCRKMAAYIQNDKLLIHCFQDSLSGPXSXWYMHLD 234

Query: 121 NSHVDSWKNLADSFLKQYKHNIDMAPDCLDLQIMEKKSTESFKEYAQRWRDTAA 130
           + HV SWKNLADSFLKQYKHNIDM  D LDLQ MEKK+ ESFKEY QRWRDTAA
Sbjct: 235 SXHVXSWKNLADSFLKQYKHNIDMXXDRLDLQXMEKKTXESFKEYXQRWRDTAA 288

The following BLAST results are available for this feature:
BLAST of Moc08g16730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158986.11.2e-5367.24LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_022157796.12.4e-4963.79LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia][more]
XP_022147189.11.2e-4863.22LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022143495.11.6e-4865.45LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
XP_022155098.12.6e-4357.47LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
BLAST of Moc08g16730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g16730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2J76.0e-5467.24Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1[more]
A0A6J1DZ901.2e-4963.79Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1[more]
A0A6J1D0995.8e-4963.22Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1[more]
A0A6J1CNY77.6e-4965.45Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1[more]
A0A6J1DM297.4e-4458.05LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia... [more]
BLAST of Moc08g16730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g16730.1Moc08g16730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid