Moc08g15850 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g15850
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr8: 12189222 .. 12189500 (+)
RNA-Seq Expression	Moc08g15850
Synteny	Moc08g15850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGCACATCAACACATTGAATACTCTGTTTTCTCAACTCACATCATTGGGTTGTAAAATAGAACCAAAAGAACGTGCTGAACTTCTACTTCAAAGTCTTCCCGATTCGTATGATCAACTTGTCATCAACCTGATAAATAATGTTCTCACCGACTATCTAAACTTGGAAGATATTGGATCTGATGTCCTACAAGAGGAAAATCGGCGCAAGAACAAAGTAGATAAGTTGGGCGAGATCACAACAAGTAGAGGCTCTAGCAGTGACAAGAGATAG

mRNA sequence

ATGACTGAGCACATCAACACATTGAATACTCTGTTTTCTCAACTCACATCATTGGGTTGTAAAATAGAACCAAAAGAACGTGCTGAACTTCTACTTCAAAGTCTTCCCGATTCGTATGATCAACTTGTCATCAACCTGATAAATAATGTTCTCACCGACTATCTAAACTTGGAAGATATTGGATCTGATGTCCTACAAGAGGAAAATCGGCGCAAGAACAAAGTAGATAAGTTGGGCGAGATCACAACAAGTAGAGGCTCTAGCAGTGACAAGAGATAG

Coding sequence (CDS)

ATGACTGAGCACATCAACACATTGAATACTCTGTTTTCTCAACTCACATCATTGGGTTGTAAAATAGAACCAAAAGAACGTGCTGAACTTCTACTTCAAAGTCTTCCCGATTCGTATGATCAACTTGTCATCAACCTGATAAATAATGTTCTCACCGACTATCTAAACTTGGAAGATATTGGATCTGATGTCCTACAAGAGGAAAATCGGCGCAAGAACAAAGTAGATAAGTTGGGCGAGATCACAACAAGTAGAGGCTCTAGCAGTGACAAGAGATAG

Protein sequence

MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDIGSDVLQEENRRKNKVDKLGEITTSRGSSSDKR

Homology

[Close]

BLAST of Moc08g15850 vs. NCBI nr
Match: BAD34493.1 (Gag-Pol [Ipomoea batatas])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           +TEH+NTLNTLFSQLTSL CKIEP+ERAELLLQSLPDSYDQL+INL NN+LTDYL  +D+
Sbjct: 114 VTEHLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDV 173

Query: 61  GSDVLQEENRRKNKVDK------LGEITTSRGSSSDK 92
            + VL+EE+RRKNK D+         +T  RG S+++
Sbjct: 174 AAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTER 210

[Close]

BLAST of Moc08g15850 vs. NCBI nr
Match: KAA0061179.1 (Gag-Pol [Cucumis melo var. makuwa] >TYK06231.1 Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 66/96 (68.75%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+N LNTLFSQLT L  KIEP ERAELLLQSLPDSYDQLVINL NN+LTDYL+ +D+
Sbjct: 114 MTEHMNILNTLFSQLTLLAYKIEPNERAELLLQSLPDSYDQLVINLTNNILTDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL------GEITTSRGSSSD 91
            S VL+EENRRKNK DKL        +  +RG SS+
Sbjct: 174 TSAVLEEENRRKNKEDKLVSSQQAEALVVTRGRSSE 209

[Close]

BLAST of Moc08g15850 vs. NCBI nr
Match: KAA0044949.1 (hypothetical protein E6C27_scaffold74G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+NTLNTLFSQLT LG KIEP + AELLLQSLPDSYDQLVINL NN+LTDYL+ +D+
Sbjct: 114 MTEHMNTLNTLFSQLTLLGYKIEPNKHAELLLQSLPDSYDQLVINLTNNILTDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL 79
            + VL+EENR KNK DKL
Sbjct: 174 AATVLEEENRCKNKEDKL 191

[Close]

BLAST of Moc08g15850 vs. NCBI nr
Match: TYK16527.1 (hypothetical protein E5676_scaffold21G003420 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.2e-23
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+NTLNTLFSQLT LG KIEP + AELLLQSLPDSYDQLVINL NN+LTDYL+ +D+
Sbjct: 114 MTEHMNTLNTLFSQLTLLGYKIEPNKCAELLLQSLPDSYDQLVINLTNNILTDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL 79
            + VL+EENR KNK DKL
Sbjct: 174 VATVLEEENRCKNKEDKL 191

[Close]

BLAST of Moc08g15850 vs. NCBI nr
Match: KAA0026163.1 (Gag-Pol [Cucumis melo var. makuwa] >TYK11620.1 Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 8.1e-23
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+NTLNTLFSQL  LG KIEP ERAELLLQSL DSYDQLVINL NN+L DYL+ +D+
Sbjct: 114 MTEHMNTLNTLFSQLALLGYKIEPNERAELLLQSLLDSYDQLVINLKNNILIDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL 79
            S VL+EENRRKNK DKL
Sbjct: 174 VSAVLEEENRRKNKEDKL 191

[Close]

BLAST of Moc08g15850 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 4   HINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDIGSD 63
           H+N  N L +QL +LG KIE +++A LLL SLP SYD L   +++   T  + L+D+ S 
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTT--IELKDVTSA 180

Query: 64  VLQEENRRKNKVDKLGE--ITTSRGSS 89
           +L  E  RK K +  G+  IT  RG S
Sbjct: 181 LLLNEKMRK-KPENQGQALITEGRGRS 204

[Close]

BLAST of Moc08g15850 vs. ExPASy TrEMBL
Match: Q6BCY1 (Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.2e-25
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           +TEH+NTLNTLFSQLTSL CKIEP+ERAELLLQSLPDSYDQL+INL NN+LTDYL  +D+
Sbjct: 114 VTEHLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDV 173

Query: 61  GSDVLQEENRRKNKVDK------LGEITTSRGSSSDK 92
            + VL+EE+RRKNK D+         +T  RG S+++
Sbjct: 174 AAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTER 210

[Close]

BLAST of Moc08g15850 vs. ExPASy TrEMBL
Match: A0A5A7V644 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00020 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 66/96 (68.75%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+N LNTLFSQLT L  KIEP ERAELLLQSLPDSYDQLVINL NN+LTDYL+ +D+
Sbjct: 114 MTEHMNILNTLFSQLTLLAYKIEPNERAELLLQSLPDSYDQLVINLTNNILTDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL------GEITTSRGSSSD 91
            S VL+EENRRKNK DKL        +  +RG SS+
Sbjct: 174 TSAVLEEENRRKNKEDKLVSSQQAEALVVTRGRSSE 209

[Close]

BLAST of Moc08g15850 vs. ExPASy TrEMBL
Match: A0A5A7TUN0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002510 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+NTLNTLFSQLT LG KIEP + AELLLQSLPDSYDQLVINL NN+LTDYL+ +D+
Sbjct: 114 MTEHMNTLNTLFSQLTLLGYKIEPNKHAELLLQSLPDSYDQLVINLTNNILTDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL 79
            + VL+EENR KNK DKL
Sbjct: 174 AATVLEEENRCKNKEDKL 191

[Close]

BLAST of Moc08g15850 vs. ExPASy TrEMBL
Match: A0A5D3CXA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003420 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+NTLNTLFSQLT LG KIEP + AELLLQSLPDSYDQLVINL NN+LTDYL+ +D+
Sbjct: 114 MTEHMNTLNTLFSQLTLLGYKIEPNKCAELLLQSLPDSYDQLVINLTNNILTDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL 79
            + VL+EENR KNK DKL
Sbjct: 174 VATVLEEENRCKNKEDKL 191

[Close]

BLAST of Moc08g15850 vs. ExPASy TrEMBL
Match: A0A5A7SNG9 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00680 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.9e-23
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1   MTEHINTLNTLFSQLTSLGCKIEPKERAELLLQSLPDSYDQLVINLINNVLTDYLNLEDI 60
           MTEH+NTLNTLFSQL  LG KIEP ERAELLLQSL DSYDQLVINL NN+L DYL+ +D+
Sbjct: 114 MTEHMNTLNTLFSQLALLGYKIEPNERAELLLQSLLDSYDQLVINLKNNILIDYLSFDDV 173

Query: 61  GSDVLQEENRRKNKVDKL 79
            S VL+EENRRKNK DKL
Sbjct: 174 VSAVLEEENRRKNKEDKL 191

The following BLAST results are available for this feature:

BLAST of Moc08g15850 vs. NCBI nr


Match Name	E-value	Identity	Description
BAD34493.1	1.5e-24	64.95	Gag-Pol [Ipomoea batatas]	[more]
KAA0061179.1	3.3e-24	68.75	Gag-Pol [Cucumis melo var. makuwa] >TYK06231.1 Gag-Pol [Cucumis melo var. makuwa...	[more]
KAA0044949.1	1.3e-23	76.92	hypothetical protein E6C27_scaffold74G002510 [Cucumis melo var. makuwa]	[more]
TYK16527.1	6.2e-23	76.92	hypothetical protein E5676_scaffold21G003420 [Cucumis melo var. makuwa]	[more]
KAA0026163.1	8.1e-23	78.21	Gag-Pol [Cucumis melo var. makuwa] >TYK11620.1 Gag-Pol [Cucumis melo var. makuwa...	[more]

BLAST of Moc08g15850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-07	42.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc08g15850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q6BCY1	7.2e-25	64.95	Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1	[more]
A0A5A7V644	1.6e-24	68.75	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00020 PE=4 S...	[more]
A0A5A7TUN0	6.1e-24	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXA6	3.0e-23	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNG9	3.9e-23	78.21	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00680 PE=4 S...	[more]

BLAST of Moc08g15850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..74 e-value: 3.6E-15 score: 56.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g15850.1	Moc08g15850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding