Moc08g15840 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g15840
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr8: 12188888 .. 12189154 (+)
RNA-Seq Expression	Moc08g15840
Synteny	Moc08g15840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAAAGTACGAGATTGAGAATTTCAACGGGACTAATTTCTCGTTGTGGAAGATGAAGATGAAGGCTATCTTGAGAAAAGATAACTGCCTTGCAGCCATCAATGCGAGACCGACGAATGTCACATATGATAAGTGGAACGAGATGGATGGGAATGCTGTTGCAAATCTTCATCTAGCTCTAGTAGATAAATTGTTGTCAAGCCTAGGAGAAGAAAACTGCGAAAGAGATTTGGGAACATCTCGGAAAGTTGTACGAAGCTAG

mRNA sequence

ATGGCGGCAAAGTACGAGATTGAGAATTTCAACGGGACTAATTTCTCGTTGTGGAAGATGAAGATGAAGGCTATCTTGAGAAAAGATAACTGCCTTGCAGCCATCAATGCGAGACCGACGAATGTCACATATGATAAGTGGAACGAGATGGATGGGAATGCTGTTGCAAATCTTCATCTAGCTCTAGTAGATAAATTGTTGTCAAGCCTAGGAGAAGAAAACTGCGAAAGAGATTTGGGAACATCTCGGAAAGTTGTACGAAGCTAG

Coding sequence (CDS)

ATGGCGGCAAAGTACGAGATTGAGAATTTCAACGGGACTAATTTCTCGTTGTGGAAGATGAAGATGAAGGCTATCTTGAGAAAAGATAACTGCCTTGCAGCCATCAATGCGAGACCGACGAATGTCACATATGATAAGTGGAACGAGATGGATGGGAATGCTGTTGCAAATCTTCATCTAGCTCTAGTAGATAAATTGTTGTCAAGCCTAGGAGAAGAAAACTGCGAAAGAGATTTGGGAACATCTCGGAAAGTTGTACGAAGCTAG

Protein sequence

MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHLALVDKLLSSLGEENCERDLGTSRKVVRS

Homology

[Close]

BLAST of Moc08g15840 vs. NCBI nr
Match: KAF2291302.1 (hypothetical protein GH714_022364 [Hevea brasiliensis])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
          MAAKYEIE FNG+NFSLWK+KM+AILRKDNCLAAI  RPT +T D+W EMD NA+ANLHL
Sbjct: 1  MAAKYEIEKFNGSNFSLWKLKMRAILRKDNCLAAIEDRPTGITDDRWKEMDDNAIANLHL 60

Query: 61 ALVDKLLSSLGEENCERDLGT 82
          A+ D +LSS+ E   ++  GT
Sbjct: 61 AMADTVLSSVAERRQQKKFGT 81

[Close]

BLAST of Moc08g15840 vs. NCBI nr
Match: AFB73911.1 (polyprotein [Citrus sinensis])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
          MAAKYEIE FNG NFSLWKMKMKA+LRK+NCLAAI  RP  +T DKWNE+DGNA+++LHL
Sbjct: 1  MAAKYEIEKFNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDGNAISDLHL 60

Query: 61 ALVDKLLSSLGEENCERDL 80
          AL D +LSS+ E+N  +++
Sbjct: 61 ALADGVLSSVAEKNTAKEI 79

[Close]

BLAST of Moc08g15840 vs. NCBI nr
Match: AFB73912.1 (polyprotein [Citrus sinensis])

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
          MAAKYEIE FNG NFSLWKMKMKA+LRK+NCLAAI  RP  +T DKWNE+D NA+++LHL
Sbjct: 1  MAAKYEIEKFNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDSNAISDLHL 60

Query: 61 ALVDKLLSSLGEENCERDL 80
          AL D +LSS+ E+N  +++
Sbjct: 61 ALADGVLSSVAEKNTAKEI 79

[Close]

BLAST of Moc08g15840 vs. NCBI nr
Match: KAF2314531.1 (hypothetical protein GH714_027382 [Hevea brasiliensis])

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1   MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
           MAAKYEIE FNG+NFSLWK+K++AILRKDNCLAAI  RPT +T D+W EMD NA+ANLHL
Sbjct: 60  MAAKYEIEKFNGSNFSLWKLKIRAILRKDNCLAAIEDRPTGITDDRWKEMDDNAIANLHL 119

Query: 61  ALVDKLLSSLGEENCERDL 80
           A+ D +LSS+ E+   +++
Sbjct: 120 AMADTVLSSVAEKKTAKEI 138

[Close]

BLAST of Moc08g15840 vs. NCBI nr
Match: KAF2294513.1 (hypothetical protein GH714_012115 [Hevea brasiliensis])

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1   MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
           MAAKYEIE FNG+NFSLWK+K++AILRKDNCLAAI  RPT +T D+W EMD NA+ANLHL
Sbjct: 827 MAAKYEIEKFNGSNFSLWKLKIRAILRKDNCLAAIEDRPTGITDDRWKEMDDNAIANLHL 886

Query: 61  ALVDKLLSSLGEENCERDL 80
           A+ D +LSS+ E+   +++
Sbjct: 887 AMADTVLSSVAEKKTAKEI 905

[Close]

BLAST of Moc08g15840 vs. ExPASy TrEMBL
Match: A0A6A6KQL2 (CCHC-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_022364 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.9e-25
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
          MAAKYEIE FNG+NFSLWK+KM+AILRKDNCLAAI  RPT +T D+W EMD NA+ANLHL
Sbjct: 1  MAAKYEIEKFNGSNFSLWKLKMRAILRKDNCLAAIEDRPTGITDDRWKEMDDNAIANLHL 60

Query: 61 ALVDKLLSSLGEENCERDLGT 82
          A+ D +LSS+ E   ++  GT
Sbjct: 61 AMADTVLSSVAERRQQKKFGT 81

[Close]

BLAST of Moc08g15840 vs. ExPASy TrEMBL
Match: H6U1E9 (Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs1 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
          MAAKYEIE FNG NFSLWKMKMKA+LRK+NCLAAI  RP  +T DKWNE+DGNA+++LHL
Sbjct: 1  MAAKYEIEKFNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDGNAISDLHL 60

Query: 61 ALVDKLLSSLGEENCERDL 80
          AL D +LSS+ E+N  +++
Sbjct: 61 ALADGVLSSVAEKNTAKEI 79

[Close]

BLAST of Moc08g15840 vs. ExPASy TrEMBL
Match: H6U1F0 (Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs2 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.6e-24
Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
          MAAKYEIE FNG NFSLWKMKMKA+LRK+NCLAAI  RP  +T DKWNE+D NA+++LHL
Sbjct: 1  MAAKYEIEKFNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDSNAISDLHL 60

Query: 61 ALVDKLLSSLGEENCERDL 80
          AL D +LSS+ E+N  +++
Sbjct: 61 ALADGVLSSVAEKNTAKEI 79

[Close]

BLAST of Moc08g15840 vs. ExPASy TrEMBL
Match: A0A6A6MLA0 (CCHC-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_027382 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1   MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
           MAAKYEIE FNG+NFSLWK+K++AILRKDNCLAAI  RPT +T D+W EMD NA+ANLHL
Sbjct: 60  MAAKYEIEKFNGSNFSLWKLKIRAILRKDNCLAAIEDRPTGITDDRWKEMDDNAIANLHL 119

Query: 61  ALVDKLLSSLGEENCERDL 80
           A+ D +LSS+ E+   +++
Sbjct: 120 AMADTVLSSVAEKKTAKEI 138

[Close]

BLAST of Moc08g15840 vs. ExPASy TrEMBL
Match: A0A6A6L306 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_012115 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1   MAAKYEIENFNGTNFSLWKMKMKAILRKDNCLAAINARPTNVTYDKWNEMDGNAVANLHL 60
           MAAKYEIE FNG+NFSLWK+K++AILRKDNCLAAI  RPT +T D+W EMD NA+ANLHL
Sbjct: 827 MAAKYEIEKFNGSNFSLWKLKIRAILRKDNCLAAIEDRPTGITDDRWKEMDDNAIANLHL 886

Query: 61  ALVDKLLSSLGEENCERDL 80
           A+ D +LSS+ E+   +++
Sbjct: 887 AMADTVLSSVAEKKTAKEI 905

The following BLAST results are available for this feature:

BLAST of Moc08g15840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2291302.1	1.8e-24	67.90	hypothetical protein GH714_022364 [Hevea brasiliensis]	[more]
AFB73911.1	3.1e-24	68.35	polyprotein [Citrus sinensis]	[more]
AFB73912.1	1.6e-23	67.09	polyprotein [Citrus sinensis]	[more]
KAF2314531.1	3.5e-23	65.82	hypothetical protein GH714_027382 [Hevea brasiliensis]	[more]
KAF2294513.1	3.5e-23	65.82	hypothetical protein GH714_012115 [Hevea brasiliensis]	[more]

BLAST of Moc08g15840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g15840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6KQL2	8.9e-25	67.90	CCHC-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_02236...	[more]
H6U1E9	1.5e-24	68.35	Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs1 PE=4 SV=1	[more]
H6U1F0	7.6e-24	67.09	Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs2 PE=4 SV=1	[more]
A0A6A6MLA0	1.7e-23	65.82	CCHC-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_02738...	[more]
A0A6A6L306	1.7e-23	65.82	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_012115 PE=4 SV=1	[more]

BLAST of Moc08g15840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..69
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g15840.1	Moc08g15840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding