Moc07g21710 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g21710
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty1-copia retrotransposon protein
Location	chr7: 15911428 .. 15911892 (+)
RNA-Seq Expression	Moc07g21710
Synteny	Moc07g21710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGTGCGAGATTCTTCATGCCAATGTGTTACTCGAGAAATTCCCTCCTTCCCGAACTAATTACCGTAACCACTTGAAAAAGAAGAAGGACCTGACTCTGCAAGAGCTGACCAGTCACATACGCACGGAGGAAGCCAACAATCTAAACGATAAGCTCTCTTCTCAATCCCTAAATTCAATTAAAGCTAATTTAGTTGAATCTTCTAGTGCTTCCAAAGATAGGTTCAAGAATAAAGAGAAGCAAATTGCAAGGGACAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATATTGGTGGAAGAATCGGGAATCCAAACTGGTCTACTATATCTGTGGAAAACCTGGGCACAAATCCTATCAGTGCACTCGGAGGAAATAAGCTCAAATGGCTACTCCACAAGCCAACCTTACAGAGATGGATGACATCATTGTCATTGTGGTTGTGGAAGCAAATCTAG

mRNA sequence

ATGAAGATGTGCGAGATTCTTCATGCCAATGTGTTACTCGAGAAATTCCCTCCTTCCCGAACTAATTACCGTAACCACTTGAAAAAGAAGAAGGACCTGACTCTGCAAGAGCTGACCAGTCACATACGCACGGAGGAAGCCAACAATCTAAACGATAAGCTCTCTTCTCAATCCCTAAATTCAATTAAAGCTAATTTAGTTGAATCTTCTAGTGCTTCCAAAGATAGGTTCAAGAATAAAGAGAAGCAAATTGCAAGGGACAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATATTGGTGGAAGAATCGGGAATCCAAACTGGTCTACTATATCTGTGGAAAACCTGGGCACAAATCCTATCAGTGCACTCGGAGGAAATAAGCTCAAATGGCTACTCCACAAGCCAACCTTACAGAGATGGATGACATCATTGTCATTGTGGTTGTGGAAGCAAATCTAG

Coding sequence (CDS)

ATGAAGATGTGCGAGATTCTTCATGCCAATGTGTTACTCGAGAAATTCCCTCCTTCCCGAACTAATTACCGTAACCACTTGAAAAAGAAGAAGGACCTGACTCTGCAAGAGCTGACCAGTCACATACGCACGGAGGAAGCCAACAATCTAAACGATAAGCTCTCTTCTCAATCCCTAAATTCAATTAAAGCTAATTTAGTTGAATCTTCTAGTGCTTCCAAAGATAGGTTCAAGAATAAAGAGAAGCAAATTGCAAGGGACAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATATTGGTGGAAGAATCGGGAATCCAAACTGGTCTACTATATCTGTGGAAAACCTGGGCACAAATCCTATCAGTGCACTCGGAGGAAATAAGCTCAAATGGCTACTCCACAAGCCAACCTTACAGAGATGGATGACATCATTGTCATTGTGGTTGTGGAAGCAAATCTAG

Protein sequence

MKMCEILHANVLLEKFPPSRTNYRNHLKKKKDLTLQELTSHIRTEEANNLNDKLSSQSLNSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRIGNPNWSTISVENLGTNPISALGGNKLKWLLHKPTLQRWMTSLSLWLWKQI

Homology

[Close]

BLAST of Moc07g21710 vs. NCBI nr
Match: XP_022156023.1 (uncharacterized protein LOC111022991 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 4.5e-34
Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL ANVLLEKF PS  +YRNHL+ KKKDLTLQEL SH+ TEEAN L DKLSSQSL
Sbjct: 51  MKMCEILQANVLLEKFXPSWNDYRNHLEHKKKDLTLQELISHVLTEEANRLKDKLSSQSL 110

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+K NLVESSSASKDRFK K K IARDRAQKNKGL+PKNIGGR+
Sbjct: 111 NSVKVNLVESSSASKDRFKRKGKPIARDRAQKNKGLRPKNIGGRM 155

[Close]

BLAST of Moc07g21710 vs. NCBI nr
Match: XP_022152111.1 (uncharacterized protein LOC111019900 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 7.2e-32
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL ANVLLEKFP S ++Y NHLK KKKDLTLQEL SH+RTEEAN L DKL  QSL
Sbjct: 215 MKMCEILQANVLLEKFPYSWSDYHNHLKHKKKDLTLQELISHVRTEEANRLKDKLFFQSL 274

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+KANLVESSSASKD FKNK KQIA+D+A+KNKGL+PKN  GRI
Sbjct: 275 NSVKANLVESSSASKDGFKNKGKQIAKDKAKKNKGLKPKNTCGRI 319

[Close]

BLAST of Moc07g21710 vs. NCBI nr
Match: XP_022157709.1 (uncharacterized protein LOC111024362 [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-28
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MK+CE+  AN LLEKFPPS ++YRNHLK KKK+LTLQEL +H+RTEEAN   DKLSSQSL
Sbjct: 148 MKICEVFQANALLEKFPPSWSDYRNHLKHKKKELTLQELINHMRTEEANRQKDKLSSQSL 207

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+KANLVESSSA KDRFKNK KQ   DR Q  KG Q KN GG+I
Sbjct: 208 NSVKANLVESSSAFKDRFKNKGKQGFNDRVQNQKGFQIKNAGGKI 252

[Close]

BLAST of Moc07g21710 vs. NCBI nr
Match: XP_022150382.1 (uncharacterized protein LOC111018559 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL  N+LLEKFPP  ++YRNHLK KKKDLTLQE+ SH+R E+AN  NDKLSSQ +
Sbjct: 181 MKMCEILQTNLLLEKFPPFWSDYRNHLKHKKKDLTLQEMISHMRIEKANKQNDKLSSQLV 240

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+KANL+ESS  +KDRFK K KQ+A++R QKNKG Q K+  GRI
Sbjct: 241 NSVKANLIESSGVNKDRFKGKGKQVAQERVQKNKGFQFKSPDGRI 285

[Close]

BLAST of Moc07g21710 vs. NCBI nr
Match: TYK23469.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL ANVLLEKFPPS  +YRNHLK KKKDL LQEL SHIRTEEAN L DKL+SQ+L
Sbjct: 71  MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHIRTEEANRLKDKLASQNL 130

Query: 61  NSIKANLVESSSASKDRFKNKE 82
           NS+ ANLVESS  ++DR K ++
Sbjct: 131 NSVNANLVESSFVNRDRTKQEK 152

[Close]

BLAST of Moc07g21710 vs. ExPASy TrEMBL
Match: A0A6J1DPG7 (uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022991 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.2e-34
Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL ANVLLEKF PS  +YRNHL+ KKKDLTLQEL SH+ TEEAN L DKLSSQSL
Sbjct: 51  MKMCEILQANVLLEKFXPSWNDYRNHLEHKKKDLTLQELISHVLTEEANRLKDKLSSQSL 110

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+K NLVESSSASKDRFK K K IARDRAQKNKGL+PKNIGGR+
Sbjct: 111 NSVKVNLVESSSASKDRFKRKGKPIARDRAQKNKGLRPKNIGGRM 155

[Close]

BLAST of Moc07g21710 vs. ExPASy TrEMBL
Match: A0A6J1DGM8 (uncharacterized protein LOC111019900 OS=Momordica charantia OX=3673 GN=LOC111019900 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL ANVLLEKFP S ++Y NHLK KKKDLTLQEL SH+RTEEAN L DKL  QSL
Sbjct: 215 MKMCEILQANVLLEKFPYSWSDYHNHLKHKKKDLTLQELISHVRTEEANRLKDKLFFQSL 274

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+KANLVESSSASKD FKNK KQIA+D+A+KNKGL+PKN  GRI
Sbjct: 275 NSVKANLVESSSASKDGFKNKGKQIAKDKAKKNKGLKPKNTCGRI 319

[Close]

BLAST of Moc07g21710 vs. ExPASy TrEMBL
Match: A0A6J1DXB7 (uncharacterized protein LOC111024362 OS=Momordica charantia OX=3673 GN=LOC111024362 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.1e-29
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MK+CE+  AN LLEKFPPS ++YRNHLK KKK+LTLQEL +H+RTEEAN   DKLSSQSL
Sbjct: 148 MKICEVFQANALLEKFPPSWSDYRNHLKHKKKELTLQELINHMRTEEANRQKDKLSSQSL 207

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+KANLVESSSA KDRFKNK KQ   DR Q  KG Q KN GG+I
Sbjct: 208 NSVKANLVESSSAFKDRFKNKGKQGFNDRVQNQKGFQIKNAGGKI 252

[Close]

BLAST of Moc07g21710 vs. ExPASy TrEMBL
Match: A0A6J1DAK7 (uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018559 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL  N+LLEKFPP  ++YRNHLK KKKDLTLQE+ SH+R E+AN  NDKLSSQ +
Sbjct: 181 MKMCEILQTNLLLEKFPPFWSDYRNHLKHKKKDLTLQEMISHMRIEKANKQNDKLSSQLV 240

Query: 61  NSIKANLVESSSASKDRFKNKEKQIARDRAQKNKGLQPKNIGGRI 105
           NS+KANL+ESS  +KDRFK K KQ+A++R QKNKG Q K+  GRI
Sbjct: 241 NSVKANLIESSGVNKDRFKGKGKQVAQERVQKNKGFQFKSPDGRI 285

[Close]

BLAST of Moc07g21710 vs. ExPASy TrEMBL
Match: A0A5D3DJQ1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00320 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.1e-21
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1   MKMCEILHANVLLEKFPPSRTNYRNHLK-KKKDLTLQELTSHIRTEEANNLNDKLSSQSL 60
           MKMCEIL ANVLLEKFPPS  +YRNHLK KKKDL LQEL SHIRTEEAN L DKL+SQ+L
Sbjct: 71  MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHIRTEEANRLKDKLASQNL 130

Query: 61  NSIKANLVESSSASKDRFKNKE 82
           NS+ ANLVESS  ++DR K ++
Sbjct: 131 NSVNANLVESSFVNRDRTKQEK 152

The following BLAST results are available for this feature:

BLAST of Moc07g21710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156023.1	4.5e-34	81.90	uncharacterized protein LOC111022991 [Momordica charantia]	[more]
XP_022152111.1	7.2e-32	79.05	uncharacterized protein LOC111019900 [Momordica charantia]	[more]
XP_022157709.1	1.3e-28	72.38	uncharacterized protein LOC111024362 [Momordica charantia]	[more]
XP_022150382.1	2.4e-27	68.57	uncharacterized protein LOC111018559 [Momordica charantia]	[more]
TYK23469.1	1.3e-20	74.39	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc07g21710 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g21710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPG7	2.2e-34	81.90	uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DGM8	3.5e-32	79.05	uncharacterized protein LOC111019900 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DXB7	6.1e-29	72.38	uncharacterized protein LOC111024362 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DAK7	1.2e-27	68.57	uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5D3DJQ1	6.1e-21	74.39	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Moc07g21710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..103
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 1..93
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g21710.1	Moc07g21710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding