Moc07g08770 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g08770
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 6825526 .. 6826401 (+)
RNA-Seq Expression	Moc07g08770
Synteny	Moc07g08770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGGACATCGATATGATTCAGGGGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGGGGACATTTCTCAACCTAACAATTTAGTCGAACCTCATGATAATTCATCACCTAGGGTGGACCCATCTATTTGTCAGCCAACAGAGGGTTTCTCCCTGCATTATTTGTCACATGAAGCTCAACTGTCCAAGAAAGGCCAACAAGCTCCTACAATATGTCAAGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGCCATTCACTCAGGTAAAGAAAAAGAAAAGGTTACCAATGGAGATGCTGAAGAAACTACAGGAAAAGAATATGCTCAAAGATGGGGAAAAGCAATAGAACAACTGTCAATGCCATTAATTAATAAAGAGCCACATTCTGAAACGAATAGAAGCTTTGTTAAAAGGAAAAATAAAGTCGAGGCAGTAATCTCGAAGCGCAAGTGGATGCACCAGCAAAGACCTACGATATACAATAATCCGTCTATAGTACCCATAAACTAATTGGCTCTGCAGTATGACCCACAACTAAGGTTGCCAACATTACCAGATAATCATAGTAGTAGGAGGCAACTAAAGCGAGAGAGCTTTCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGTCATTGCAACCACCTTATCCAAAGTGGTACGACCCGCAAGTCCACTGTGATTACCATGTAGTAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGTGCAAGTTCTAATGAAGGCAGGATGGCTAAAGTTTTCAACGGAAGATGGTCAACACATGAAGCACTAG

mRNA sequence

ATGAGACAGGACATCGATATGATTCAGGGGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGGGGACATTTCTCAACCTAACAATTTAGTCGAACCTCATGATAATTCATCACCTAGGGTGGACCCATCTATTTGTCAGCCAACAGAGGGTTTCTCCCTGCATTATTTGTCACATGAAGCTCAACTGTCCAAGAAAGGCCAACAAGCTCCTACAATATGTCAAGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGCCATTCACTCAGGTAAAGAAAAAGAAAAGGTTACCAATGGAGATGCTGAAGAAACTACAGGAAAAGAATATGCTCAAAGATGGGGAAAAGCAATAGAACAACTGTCAATGCCATTAATTAATAAAGAGCCACATTCTGAAACGAATAGAAGCTTTGTTAAAAGGAAAAATAAAGTCGAGGCATATGACCCACAACTAAGGTTGCCAACATTACCAGATAATCATAGTAGTAGGAGGCAACTAAAGCGAGAGAGCTTTCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGTCATTGCAACCACCTTATCCAAAGTGGTACGACCCGCAAGTCCACTGTGATTACCATGTAGTAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGTGCAAGTTCTAATGAAGGCAGGATGGCTAAAGTTTTCAACGGAAGATGGTCAACACATGAAGCACTAG

Coding sequence (CDS)

ATGAGACAGGACATCGATATGATTCAGGGGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGGGGACATTTCTCAACCTAACAATTTAGTCGAACCTCATGATAATTCATCACCTAGGGTGGACCCATCTATTTGTCAGCCAACAGAGGGTTTCTCCCTGCATTATTTGTCACATGAAGCTCAACTGTCCAAGAAAGGCCAACAAGCTCCTACAATATGTCAAGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGCCATTCACTCAGGTAAAGAAAAAGAAAAGGTTACCAATGGAGATGCTGAAGAAACTACAGGAAAAGAATATGCTCAAAGATGGGGAAAAGCAATAGAACAACTGTCAATGCCATTAATTAATAAAGAGCCACATTCTGAAACGAATAGAAGCTTTGTTAAAAGGAAAAATAAAGTCGAGGCATATGACCCACAACTAAGGTTGCCAACATTACCAGATAATCATAGTAGTAGGAGGCAACTAAAGCGAGAGAGCTTTCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGTCATTGCAACCACCTTATCCAAAGTGGTACGACCCGCAAGTCCACTGTGATTACCATGTAGTAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGTGCAAGTTCTAATGAAGGCAGGATGGCTAAAGTTTTCAACGGAAGATGGTCAACACATGAAGCACTAG

Protein sequence

MRQDIDMIQGQVTEIFNVLKNIVTVGDISQPNNLVEPHDNSSPRVDPSICQPTEGFSLHYLSHEAQLSKKGQQAPTICQVEFTLQDGQTSKAIHSGKEKEKVTNGDAEETTGKEYAQRWGKAIEQLSMPLINKEPHSETNRSFVKRKNKVEAYDPQLRLPTLPDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHVVAVGHSTENCTSLKHKVQVLMKAGWLKFSTEDGQHMKH

Homology

[Close]

BLAST of Moc07g08770 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 236.1 bits (601), Expect = 3.4e-58
Identity = 137/225 (60.89%), Postives = 150/225 (66.67%), Query Frame = 0


Query: 1   MRQDIDMIQGQVTEIFNVLKNIVTVGDISQPNNLVEPHDNSSPRVDPSICQPTEGFSLHY 60
           MRQDID IQ QV +I NVLKNIVTVG  SQPNNLVEP++NSSPRVDP +CQ  EGF  H 
Sbjct: 49  MRQDIDNIQKQVMKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHS 108

Query: 61  LSHEAQLSKKGQQAPTICQVEFTLQDGQTSKAIHS----GKEKEKVTNGDAEETTGKEYA 120
            SH+AQLSKKGQQ PT CQVEFT +D QT K  +S    G+EKE VT             
Sbjct: 109 SSHDAQLSKKGQQVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVT------------- 168

Query: 121 QRWGKAIEQLSMPLINKEPHSETNRSFVKRKNKV---------------EAYDP------ 180
           QRWGKAIEQL +PLINKEPH + N+S +KRKNKV                AY P      
Sbjct: 169 QRWGKAIEQLPVPLINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPIN 228

Query: 181 ----QLRLPTLPDNHSSRRQLKRESFHPIPISYTELLSQLFQGNL 197
               Q    TLP+NHSSRRQLKRESFH IP SYTELLSQLFQGNL
Sbjct: 229 SMTLQDDPQTLPNNHSSRRQLKRESFHSIPTSYTELLSQLFQGNL 260

[Close]

BLAST of Moc07g08770 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 6.9e-27
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 164 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHV 223
           +  ++R   K+  F PIP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD    CDYH 
Sbjct: 335 EQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDTNARCDYHA 394

Query: 224 VAVGHSTENCTSLKHKVQVLMKAGWLKFSTEDG 257
            A+GHSTENCT+LK++VQ L+KAGWL F  E+G
Sbjct: 395 GAIGHSTENCTALKYRVQALIKAGWLNFKKENG 427

[Close]

BLAST of Moc07g08770 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-25
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 167 SSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHVVAV 226
           ++R   K+  F PIP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD    CDYH  A+
Sbjct: 378 NNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDANARCDYHAGAI 437

Query: 227 GHSTENCTSLKHKVQVLMKAGWLKFSTEDG 257
            HSTENCT LK++VQ L+KAGW  F  E+G
Sbjct: 438 XHSTENCTXLKYRVQALIKAGWXNFKKENG 467

[Close]

BLAST of Moc07g08770 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-24
Identity = 57/98 (58.16%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 164 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHV 223
           +N S+R+Q     F PIP++YTELL QLFQ N LAPVPV+ +QPPYP WYD    CDYH 
Sbjct: 440 NNRSTRKQ---SQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPGWYDANXRCDYHA 499

Query: 224 VAVGHSTENCTSLKHKVQVLMKAGWLKFSTEDGQHMKH 262
            A+GHSTENCT+LK++VQ L+KAG L F  E+   +K+
Sbjct: 500 GAIGHSTENCTALKYRVQALIKAGXLTFKKENXPDVKN 534

[Close]

BLAST of Moc07g08770 vs. NCBI nr
Match: XP_017979699.1 (PREDICTED: uncharacterized protein LOC108662712 [Theobroma cacao])

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-23
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 152 AYDPQLRLPTLPDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPK 211
           A+D Q      P     +  L+R  F PIP+SYT LL QL +  LLA  P++ L+PP+PK
Sbjct: 164 AHDSQQAHNFNPYYPGPKTTLERPKFDPIPVSYTTLLPQLIENRLLARTPLQPLRPPFPK 223

Query: 212 WYDPQVHCDYHVVAVGHSTENCTSLKHKVQVLMKAGWLKFSTED 256
           WYDP  HCDYH    GHSTENCT+LKHKVQ L+KAG L F+ +D
Sbjct: 224 WYDPNAHCDYHFGIQGHSTENCTALKHKVQALIKAGLLNFAKKD 267

[Close]

BLAST of Moc07g08770 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 137/225 (60.89%), Postives = 150/225 (66.67%), Query Frame = 0


Query: 1   MRQDIDMIQGQVTEIFNVLKNIVTVGDISQPNNLVEPHDNSSPRVDPSICQPTEGFSLHY 60
           MRQDID IQ QV +I NVLKNIVTVG  SQPNNLVEP++NSSPRVDP +CQ  EGF  H 
Sbjct: 49  MRQDIDNIQKQVMKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHS 108

Query: 61  LSHEAQLSKKGQQAPTICQVEFTLQDGQTSKAIHS----GKEKEKVTNGDAEETTGKEYA 120
            SH+AQLSKKGQQ PT CQVEFT +D QT K  +S    G+EKE VT             
Sbjct: 109 SSHDAQLSKKGQQVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVT------------- 168

Query: 121 QRWGKAIEQLSMPLINKEPHSETNRSFVKRKNKV---------------EAYDP------ 180
           QRWGKAIEQL +PLINKEPH + N+S +KRKNKV                AY P      
Sbjct: 169 QRWGKAIEQLPVPLINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPIN 228

Query: 181 ----QLRLPTLPDNHSSRRQLKRESFHPIPISYTELLSQLFQGNL 197
               Q    TLP+NHSSRRQLKRESFH IP SYTELLSQLFQGNL
Sbjct: 229 SMTLQDDPQTLPNNHSSRRQLKRESFHSIPTSYTELLSQLFQGNL 260

[Close]

BLAST of Moc07g08770 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-27
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 164 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHV 223
           +  ++R   K+  F PIP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD    CDYH 
Sbjct: 335 EQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDTNARCDYHA 394

Query: 224 VAVGHSTENCTSLKHKVQVLMKAGWLKFSTEDG 257
            A+GHSTENCT+LK++VQ L+KAGWL F  E+G
Sbjct: 395 GAIGHSTENCTALKYRVQALIKAGWLNFKKENG 427

[Close]

BLAST of Moc07g08770 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-25
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 167 SSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHVVAV 226
           ++R   K+  F PIP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD    CDYH  A+
Sbjct: 378 NNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDANARCDYHAGAI 437

Query: 227 GHSTENCTSLKHKVQVLMKAGWLKFSTEDG 257
            HSTENCT LK++VQ L+KAGW  F  E+G
Sbjct: 438 XHSTENCTXLKYRVQALIKAGWXNFKKENG 467

[Close]

BLAST of Moc07g08770 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-25
Identity = 57/98 (58.16%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 164 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHV 223
           +N S+R+Q     F PIP++YTELL QLFQ N LAPVPV+ +QPPYP WYD    CDYH 
Sbjct: 440 NNRSTRKQ---SQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPGWYDANXRCDYHA 499

Query: 224 VAVGHSTENCTSLKHKVQVLMKAGWLKFSTEDGQHMKH 262
            A+GHSTENCT+LK++VQ L+KAG L F  E+   +K+
Sbjct: 500 GAIGHSTENCTALKYRVQALIKAGXLTFKKENXPDVKN 534

[Close]

BLAST of Moc07g08770 vs. ExPASy TrEMBL
Match: A0A061FBD9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033215 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-23
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 173 KRESFHPIPISYTELLSQLFQGNLLAPVPVESLQPPYPKWYDPQVHCDYHVVAVGHSTEN 232
           +R  F PIP+ YT LL QL +  LLA  P+E L+PP+PKWYDP  HCDYH    GHSTEN
Sbjct: 389 ERPKFDPIPVPYTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTEN 448

Query: 233 CTSLKHKVQVLMKAGWLKFSTEDGQHM 260
           CT+LKHKVQ L+KAG L F+ +D  ++
Sbjct: 449 CTALKHKVQALIKAGLLNFAKKDNSNV 475

The following BLAST results are available for this feature:

BLAST of Moc07g08770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153553.1	3.4e-58	60.89	uncharacterized protein LOC111021029 [Momordica charantia]	[more]
XP_022158986.1	6.9e-27	60.22	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022147189.1	5.0e-25	60.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
XP_022155098.1	1.4e-24	58.16	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_017979699.1	2.7e-23	53.85	PREDICTED: uncharacterized protein LOC108662712 [Theobroma cacao]	[more]

BLAST of Moc07g08770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g08770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHS7	1.6e-58	60.89	uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1E2J7	3.3e-27	60.22	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1D099	2.4e-25	60.00	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A6J1DM29	7.0e-25	58.16	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A061FBD9	5.0e-23	58.62	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033215 PE=4 SV=1	[more]

BLAST of Moc07g08770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g08770.1	Moc07g08770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding