Moc07g05830 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g05830
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	30S ribosomal protein S12, chloroplastic
Location	chr7: 4873078 .. 4873727 (-)
RNA-Seq Expression	Moc07g05830
Synteny	Moc07g05830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGAGATGGCATGGAAGAAGGAAGGAGATTCTCGAACGAGGAAAAAGATCCAACGACTTTGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTATGGTCCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTTAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAAAGGGAGAAGGGTTAAGGACCTCTTGAAAAAAGCGAGCAGCAAGCTGAAAAAGCTCTTTCCCCTTTGAATAATAATAACATCAGCTTCATAGCTCCAACCTATACAAGGGGTAAGCCAAAACTCGTTGAAGGAAGGGCTTCATAGCCTTACCTTATTATTAGAGTGACTGGGAAGTCCGCTTCAGTCATTTGAGTCTTTGACAACCACTCTCTCCTGTGAAACTCCTCCTTGTTCTATGATTGATCTAACCATTTTCTTTAGGCAGAAGCTGAAAGTTGGTTCACGCGGGCACAAACGAGCACCGAATGCAACAACAGGGAACTGTGA

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGAGATGGCATGGAAGAAGGAAGGAGATTCTCGAACGAGGAAAAAGATCCAACGACTTTGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTATGGTCCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTTAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGAAGCTGAAAGTTGGTTCACGCGGGCACAAACGAGCACCGAATGCAACAACAGGGAACTGTGA

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGAGATGGCATGGAAGAAGGAAGGAGATTCTCGAACGAGGAAAAAGATCCAACGACTTTGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTATGGTCCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTTAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGAAGCTGAAAGTTGGTTCACGCGGGCACAAACGAGCACCGAATGCAACAACAGGGAACTGTGA

Protein sequence

MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIPEAESWFTRAQTSTECNNREL

Homology

[Close]

BLAST of Moc07g05830 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-39
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSV 60
          MNENVTELV VTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKISC VLSSGSKGDLSV
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          NFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIP 93

[Close]

BLAST of Moc07g05830 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-38
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSV 60
          MNENVTELVLVTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKIS  VLSSGSKGDLS+
Sbjct: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61 NFSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          NFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIP 93

[Close]

BLAST of Moc07g05830 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 8.7e-35
Identity = 83/93 (89.25%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSV 60
          MNENVT+LV VTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKIS  VLSSGSKGDLSV
Sbjct: 1  MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          NFSTITPK  NSAL KVARVRLTSGFEI AYIP
Sbjct: 61 NFSTITPKNQNSALRKVARVRLTSGFEIIAYIP 93

[Close]

BLAST of Moc07g05830 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 2   NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVN 61
           +ENVT+LVLVTLRDG+EEG RFSNEEKDP T KELN+E YEVKISC VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
           FSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIP 171

[Close]

BLAST of Moc07g05830 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 2  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVN 61
          +ENVTELVLVTLRDG+EEGRRFSNEEKDP T KELNEEPYEVKISC   +S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISC---TSDSKGDLSVN 67

Query: 62 FSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          FSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIP 96

[Close]

BLAST of Moc07g05830 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 46 SCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          +C  + SGSKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 33 TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIP 80

[Close]

BLAST of Moc07g05830 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-09
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 55 KGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          +G  +  +STITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 31 RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIP 69

[Close]

BLAST of Moc07g05830 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 64 TITPKKPNSALGKVARVRLTSGFEITAYIP 94
          TITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIP 68

[Close]

BLAST of Moc07g05830 vs. ExPASy Swiss-Prot
Match: A4GYT5 (30S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 64 TITPKKPNSALGKVARVRLTSGFEITAYIP 94
          TITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIP 68

[Close]

BLAST of Moc07g05830 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 64 TITPKKPNSALGKVARVRLTSGFEITAYIP 94
          TITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIP 68

[Close]

BLAST of Moc07g05830 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.7e-39
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSV 60
          MNENVTELV VTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKISC VLSSGSKGDLSV
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          NFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIP 93

[Close]

BLAST of Moc07g05830 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.5e-35
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 2   NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVN 61
           +ENVT+LVLVTLRDG+EEG RFSNEEKDP T KELN+E YEVKISC VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
           FSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIP 171

[Close]

BLAST of Moc07g05830 vs. ExPASy TrEMBL
Match: A0A443Q5G0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02772100 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 2  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVN 61
          +ENVTELVLVTLRDG+EEGRRFSNEEKDP T KELNEEPYEVKISC   +S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISC---TSDSKGDLSVN 67

Query: 62 FSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          FSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIP 96

[Close]

BLAST of Moc07g05830 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 2  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVN 61
          +ENVTELVLVTLRDG+EEGRRFSNEEKDP T KELNEEPYEVKISC   +S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISC---TSDSKGDLSVN 67

Query: 62 FSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          FSTITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIP 96

[Close]

BLAST of Moc07g05830 vs. ExPASy TrEMBL
Match: A0A6P6GKJ1 (uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC112488768 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSV 60
          MNENVTELVLVTL++G+EEG+RFSNEE D  T KELNEEPYE+KISCMVL +G KGDLS+
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDLSI 60

Query: 61 NFSTITPKKPNSALGKVARVRLTSGFEITAYIP 94
          NFS I PKKPNSAL KVARVRLT GFE+T +IP
Sbjct: 61 NFSIIIPKKPNSALSKVARVRLTFGFEMTTFIP 93

[Close]

BLAST of Moc07g05830 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 64 TITPKKPNSALGKVARVRLTSGFEITAYIP 94
          TITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIP 68

[Close]

BLAST of Moc07g05830 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 64 TITPKKPNSALGKVARVRLTSGFEITAYIP 94
          TITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIP 68

[Close]

BLAST of Moc07g05830 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 64 TITPKKPNSALGKVARVRLTSGFEITAYIP 94
          TITPKKPNSAL KVARVRLTSGFEITAYIP
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIP 68

The following BLAST results are available for this feature:

BLAST of Moc07g05830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932068.1	7.6e-39	94.62	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038902483.1	3.8e-38	93.55	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038896566.1	8.7e-35	89.25	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
KAF1876942.1	1.1e-34	88.04	hypothetical protein Lal_00033867 [Lupinus albus]	[more]
RWR98012.1	1.9e-34	89.13	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]

BLAST of Moc07g05830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	1.2e-15	87.50	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	3.8e-09	79.49	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4QJV5	3.2e-08	96.67	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4GYT5	3.2e-08	96.67	30S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
Q3V510	3.2e-08	96.67	30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE...	[more]

BLAST of Moc07g05830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	3.7e-39	94.62	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A6A5N1Q8	5.5e-35	88.04	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A443Q5G0	9.4e-35	89.13	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A3S3NSS0	9.4e-35	89.13	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6P6GKJ1	2.6e-32	78.49	uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC11248876...	[more]

BLAST of Moc07g05830 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	2.3e-09	96.67	ribosomal protein S12A	[more]
ATCG01230.1	2.3e-09	96.67	ribosomal protein S12B	[more]
ATCG00905.1	2.3e-09	96.67	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 67..82 score: 85.24 coord: 83..102 score: 35.62
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 58..96 e-value: 1.4E-11 score: 44.0
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 35..94
None	No IPR available	GENE3D	2.40.50.140		coord: 8..105 e-value: 2.9E-15 score: 58.0
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 35..94
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 61..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g05830.1	Moc07g05830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome