Moc07g03430 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g03430
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 2976614 .. 2977836 (+)
RNA-Seq Expression	Moc07g03430
Synteny	Moc07g03430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGTCAAGGTGCTCAACGAACCTTCCATCGATCAACCAGAGATGATGGAAGTTCAGTTAACCCAGCCCACGTGGATGGATCCAATCAAGAATTTTCTAAGTGGCATAACTCCGACGGACACGTCCGAGGCCAGGAAAGTCCGCCGTCAGGCAACTCATTACATCGTGCAGGACGATAAGCTGTACAAAAGGGGATTTTCTCTACCACTATTGCAGTGCCTCGGTCCTGATGAGGCGAGCTACGTCATTCAGGAAGTCCATGAGGGGATTTCCAGAAATCACGTTGGAGCTAGGTCAATGGCTGCGAAGATCGTCAGATAGGGTTACTATTGGCCGACCATTAACTGCGATACTAAGGAATTCGTAAAAAGGTGTGACAATTGTCCGCGCTTCGCAAATGGGCTACAACAATCTTCGGAGCTGCTGACCCCGATCTCGAGTCGTTGGCCGTTCGCTCAATGGGGGTTAGATCTGATCGGCCCGCTACCGACAGCGAAAGGACAGGTAAAGTATGTTGTGGTAAGAGTCTCTCCTTTGGTTATTAACACTCACTATGGGTTCCCGGATGTGTTTGATGCAGTAGGTAAAGAAGTGTTGGTACATCCAACAGACGAATAGGTAGAGGAGGTGCGTAAGCTCCTATGTAGACCAGACAAGTCAAGGACCGTCTTGACAACGAGGATGTTTTCATTAAAACCCCTCGATATCAATGAACAAGGCACGAAGTGGACGTATGTGGTGAAGAATCGATTGATCCCCACTTCCCATGATTCCTCCATTAAGAGAAATAGAGTGATGATGGTGTACATTTTGATGAAGGGCATTGAGTTCAATTTTGGGGAACTCATAAGGAATGAGATTTAGAGTTGTTCGGAGAAAATGGTAGGTCCAATTGTTTTTCCTGGACTAATAACAGAGTTATGTTTGCAAGCAGAGGTGGAGGCTGATGATGAGGTTGTAGTGACACTTAAGAGTACGTCACATCCATAAGGAGAGTTCGAGGATACTCGTTTGTTCGTGAGGAAGATTCTCCCACTATCGCTGCAGATCCCAAGACCCATGGTGTGGTTGCTAGAGAACAATACAATGAGTTAAGTCGCAAATATGATCTTGTCTTGGCTACTCAACATGCCACGTGTGAGTTTCTCATGGAGCTTTATAGAGATGGTGCACCTTCTCTCCCCGACGAGCTCAAGGCCGACTTGCCTTCTTCTTCATGA

mRNA sequence

ATGCTGGTCAAGGTGCTCAACGAACCTTCCATCGATCAACCAGAGATGATGGAAGTTCAGTTAACCCAGCCCACGTGGATGGATCCAATCAAGAATTTTCTAAGTGGCATAACTCCGACGGACACGTCCGAGGCCAGGAAAGTCCGCCGTCAGGCAACTCATTACATCGTGCAGGACGATAAGCTGTACAAAAGGGGATTTTCTCTACCACTATTGCAGTGCCTCGGTCCTGATGAGGCGAGCTACGTCATTCAGGAAGTCCATGAGGGGATTTCCAGAAATCACGTTGGAGCTAGGTGTGACAATTGTCCGCGCTTCGCAAATGGGCTACAACAATCTTCGGAGCTGCTGACCCCGATCTCGAGTCGTTGGCCGTTCGCTCAATGGGGGTTAGATCTGATCGGCCCGCTACCGACAGCGAAAGGACAGGTAAAGTATGTTGTGGTAAGAGTCTCTCCTTTGGTTATTAACACTCACTATGGGTTCCCGGATGTGTTTGATGCAGTAGAGGTGGAGGCTGATGATGAGGTTGTAGTGACACTTAAGAATCCCAAGACCCATGGTGTGGTTGCTAGAGAACAATACAATGAGTTAAGTCGCAAATATGATCTTGTCTTGGCTACTCAACATGCCACGTGTGAGTTTCTCATGGAGCTTTATAGAGATGGTGCACCTTCTCTCCCCGACGAGCTCAAGGCCGACTTGCCTTCTTCTTCATGA

Coding sequence (CDS)

ATGCTGGTCAAGGTGCTCAACGAACCTTCCATCGATCAACCAGAGATGATGGAAGTTCAGTTAACCCAGCCCACGTGGATGGATCCAATCAAGAATTTTCTAAGTGGCATAACTCCGACGGACACGTCCGAGGCCAGGAAAGTCCGCCGTCAGGCAACTCATTACATCGTGCAGGACGATAAGCTGTACAAAAGGGGATTTTCTCTACCACTATTGCAGTGCCTCGGTCCTGATGAGGCGAGCTACGTCATTCAGGAAGTCCATGAGGGGATTTCCAGAAATCACGTTGGAGCTAGGTGTGACAATTGTCCGCGCTTCGCAAATGGGCTACAACAATCTTCGGAGCTGCTGACCCCGATCTCGAGTCGTTGGCCGTTCGCTCAATGGGGGTTAGATCTGATCGGCCCGCTACCGACAGCGAAAGGACAGGTAAAGTATGTTGTGGTAAGAGTCTCTCCTTTGGTTATTAACACTCACTATGGGTTCCCGGATGTGTTTGATGCAGTAGAGGTGGAGGCTGATGATGAGGTTGTAGTGACACTTAAGAATCCCAAGACCCATGGTGTGGTTGCTAGAGAACAATACAATGAGTTAAGTCGCAAATATGATCTTGTCTTGGCTACTCAACATGCCACGTGTGAGTTTCTCATGGAGCTTTATAGAGATGGTGCACCTTCTCTCCCCGACGAGCTCAAGGCCGACTTGCCTTCTTCTTCATGA

Protein sequence

MLVKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFLSGITPTDTSEARKVRRQATHYIVQDDKLYKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGARCDNCPRFANGLQQSSELLTPISSRWPFAQWGLDLIGPLPTAKGQVKYVVVRVSPLVINTHYGFPDVFDAVEVEADDEVVVTLKNPKTHGVVAREQYNELSRKYDLVLATQHATCEFLMELYRDGAPSLPDELKADLPSSS

Homology

[Close]

BLAST of Moc07g03430 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-46
Identity = 94/176 (53.41%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFL-SGITPTDTSEARKVRRQATHYIVQDDK 62
           V++L E S+DQPE+ME+   QPTWMDPIK+FL +G  P D S+ARK+RRQA HY++Q+ K
Sbjct: 445 VEILTESSVDQPELMEITSAQPTWMDPIKDFLVNGSVPADPSQARKLRRQAAHYLMQEGK 504

Query: 63  LYKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGAR---------------------- 122
           L+KRG+SLPLL+CL P+EA YV++E+HEG+  NH GA+                      
Sbjct: 505 LFKRGYSLPLLRCLDPEEARYVMREIHEGVCGNHGGAKSMAAKVVRQGYYWLTIERDTKE 564

Query: 123 ----CDNCPRFANGLQQSSELLTPISSRWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
               CD C RFA+ L+Q  E+LT ISS WPFAQWG+DLIGPLP  KGQ+K+ +V V
Sbjct: 565 FAKTCDKCQRFASILRQPPEMLTLISSPWPFAQWGIDLIGPLPMGKGQLKFAIVAV 620

[Close]

BLAST of Moc07g03430 vs. NCBI nr
Match: XP_022158215.1 (uncharacterized protein LOC111024751 [Momordica charantia])

HSP 1 Score: 194.9 bits (494), Expect = 7.9e-46
Identity = 94/176 (53.41%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFL-SGITPTDTSEARKVRRQATHYIVQDDK 62
           V++L E SIDQPE+M++   +PTWMDPIK+FL +G  P D S+ARK+RRQA HY++Q+ K
Sbjct: 389 VEILVESSIDQPEIMDITSARPTWMDPIKDFLVNGSIPADPSQARKLRRQAAHYLMQEGK 448

Query: 63  LYKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGAR---------------------- 122
           L+KRG+SLPLL+CL P+EA YV++E+HEG+  NH GAR                      
Sbjct: 449 LFKRGYSLPLLRCLDPEEARYVMREIHEGVCGNHGGARSMAAKVVRQGYYWPTIERDTKE 508

Query: 123 ----CDNCPRFANGLQQSSELLTPISSRWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
               CD C RFA+ L+Q  E+LTPISS WPFAQWG+DLI PLP  KGQ+K+ +V V
Sbjct: 509 FAKTCDKCQRFASILRQPPEMLTPISSPWPFAQWGIDLIDPLPMGKGQLKFAIVAV 564

[Close]

BLAST of Moc07g03430 vs. NCBI nr
Match: XP_022157896.1 (uncharacterized protein LOC111024502 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-41
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFLSGITPTDTSEARKVRRQATHYIVQDDKL 62
           V++L+ PSI  PE+ME+    P+WMDPI  F+ GI+P D++E +K+ R+A  +I++D  L
Sbjct: 236 VEILDNPSILDPEVMEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGAL 295

Query: 63  YKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGARCDNCPRFANGLQQSSELLTPISS 122
           Y+RGFSLPLL C+ P E  Y+++E+HEG ++  V   CDNC RFAN + Q  ELLTPIS 
Sbjct: 296 YRRGFSLPLLNCVTPVEGLYILREIHEGDAKQFV-KTCDNCQRFANIIHQPPELLTPISD 355

Query: 123 RWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
            WPFAQWG+D+IGP P  KGQ K+VVV V
Sbjct: 356 PWPFAQWGVDIIGPFPLGKGQTKFVVVAV 383

[Close]

BLAST of Moc07g03430 vs. NCBI nr
Match: XP_022152233.1 (uncharacterized protein LOC111020002 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-41
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFLSGITPTDTSEARKVRRQATHYIVQDDKL 62
           V++L+ PSI  PE+ME+    P+WMDPI  F+ GI+P D++E +K+ R+A  +I++D  L
Sbjct: 236 VEILDNPSILDPEVMEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGAL 295

Query: 63  YKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGARCDNCPRFANGLQQSSELLTPISS 122
           Y+RGFSLPLL C+ P E  Y+++E+HEG ++  V   CDNC RFAN + Q  ELLTPIS 
Sbjct: 296 YRRGFSLPLLNCVTPVEGLYILREIHEGDAKQFV-KTCDNCQRFANIIHQPPELLTPISD 355

Query: 123 RWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
            WPFAQWG+D+IGP P  KGQ K+VVV V
Sbjct: 356 PWPFAQWGVDIIGPFPLGKGQTKFVVVAV 383

[Close]

BLAST of Moc07g03430 vs. NCBI nr
Match: XP_022157626.1 (uncharacterized protein LOC111024288 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 4.5e-41
Identity = 84/176 (47.73%), Postives = 116/176 (65.91%), Query Frame = 0


Query: 1   MLVKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFLSGITPTDTSEARKVRRQATHYIVQDD 60
           +LVK+L+ PSI + +MMEV     +WMDPI+NFL G  P +  EA+K+RR+   Y+++D+
Sbjct: 235 VLVKILDNPSILELDMMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARYLLRDE 294

Query: 61  KLYKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGAR--------------------- 120
            +Y+RGFSLPLL+C+  ++ SYV++EVHEG+  NH+GAR                     
Sbjct: 295 TMYQRGFSLPLLKCISKEDESYVLKEVHEGVCGNHLGARSLSTKVIRQGYYWPTVDQDAK 354

Query: 121 -----CDNCPRFANGLQQSSELLTPISSRWPFAQWGLDLIGPLPTAKGQVKYVVVR 151
                CDNC RFAN + Q  ELLTPIS+ WPFAQWG+DLIGP P  KGQ K+ +++
Sbjct: 355 EFVKACDNCQRFANIIHQPPELLTPISTPWPFAQWGVDLIGPFPLGKGQTKFELLQ 410

[Close]

BLAST of Moc07g03430 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-46
Identity = 94/176 (53.41%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFL-SGITPTDTSEARKVRRQATHYIVQDDK 62
           V++L E S+DQPE+ME+   QPTWMDPIK+FL +G  P D S+ARK+RRQA HY++Q+ K
Sbjct: 445 VEILTESSVDQPELMEITSAQPTWMDPIKDFLVNGSVPADPSQARKLRRQAAHYLMQEGK 504

Query: 63  LYKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGAR---------------------- 122
           L+KRG+SLPLL+CL P+EA YV++E+HEG+  NH GA+                      
Sbjct: 505 LFKRGYSLPLLRCLDPEEARYVMREIHEGVCGNHGGAKSMAAKVVRQGYYWLTIERDTKE 564

Query: 123 ----CDNCPRFANGLQQSSELLTPISSRWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
               CD C RFA+ L+Q  E+LT ISS WPFAQWG+DLIGPLP  KGQ+K+ +V V
Sbjct: 565 FAKTCDKCQRFASILRQPPEMLTLISSPWPFAQWGIDLIGPLPMGKGQLKFAIVAV 620

[Close]

BLAST of Moc07g03430 vs. ExPASy TrEMBL
Match: A0A6J1DV78 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024751 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.8e-46
Identity = 94/176 (53.41%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFL-SGITPTDTSEARKVRRQATHYIVQDDK 62
           V++L E SIDQPE+M++   +PTWMDPIK+FL +G  P D S+ARK+RRQA HY++Q+ K
Sbjct: 389 VEILVESSIDQPEIMDITSARPTWMDPIKDFLVNGSIPADPSQARKLRRQAAHYLMQEGK 448

Query: 63  LYKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGAR---------------------- 122
           L+KRG+SLPLL+CL P+EA YV++E+HEG+  NH GAR                      
Sbjct: 449 LFKRGYSLPLLRCLDPEEARYVMREIHEGVCGNHGGARSMAAKVVRQGYYWPTIERDTKE 508

Query: 123 ----CDNCPRFANGLQQSSELLTPISSRWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
               CD C RFA+ L+Q  E+LTPISS WPFAQWG+DLI PLP  KGQ+K+ +V V
Sbjct: 509 FAKTCDKCQRFASILRQPPEMLTPISSPWPFAQWGIDLIDPLPMGKGQLKFAIVAV 564

[Close]

BLAST of Moc07g03430 vs. ExPASy TrEMBL
Match: A0A6J1DZH2 (uncharacterized protein LOC111024502 OS=Momordica charantia OX=3673 GN=LOC111024502 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 5.8e-42
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFLSGITPTDTSEARKVRRQATHYIVQDDKL 62
           V++L+ PSI  PE+ME+    P+WMDPI  F+ GI+P D++E +K+ R+A  +I++D  L
Sbjct: 236 VEILDNPSILDPEVMEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGAL 295

Query: 63  YKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGARCDNCPRFANGLQQSSELLTPISS 122
           Y+RGFSLPLL C+ P E  Y+++E+HEG ++  V   CDNC RFAN + Q  ELLTPIS 
Sbjct: 296 YRRGFSLPLLNCVTPVEGLYILREIHEGDAKQFV-KTCDNCQRFANIIHQPPELLTPISD 355

Query: 123 RWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
            WPFAQWG+D+IGP P  KGQ K+VVV V
Sbjct: 356 PWPFAQWGVDIIGPFPLGKGQTKFVVVAV 383

[Close]

BLAST of Moc07g03430 vs. ExPASy TrEMBL
Match: A0A6J1DEB3 (uncharacterized protein LOC111020002 OS=Momordica charantia OX=3673 GN=LOC111020002 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 5.8e-42
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 3   VKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFLSGITPTDTSEARKVRRQATHYIVQDDKL 62
           V++L+ PSI  PE+ME+    P+WMDPI  F+ GI+P D++E +K+ R+A  +I++D  L
Sbjct: 236 VEILDNPSILDPEVMEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGAL 295

Query: 63  YKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGARCDNCPRFANGLQQSSELLTPISS 122
           Y+RGFSLPLL C+ P E  Y+++E+HEG ++  V   CDNC RFAN + Q  ELLTPIS 
Sbjct: 296 YRRGFSLPLLNCVTPVEGLYILREIHEGDAKQFV-KTCDNCQRFANIIHQPPELLTPISD 355

Query: 123 RWPFAQWGLDLIGPLPTAKGQVKYVVVRV 152
            WPFAQWG+D+IGP P  KGQ K+VVV V
Sbjct: 356 PWPFAQWGVDIIGPFPLGKGQTKFVVVAV 383

[Close]

BLAST of Moc07g03430 vs. ExPASy TrEMBL
Match: A0A6J1DYR5 (uncharacterized protein LOC111024288 OS=Momordica charantia OX=3673 GN=LOC111024288 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 84/176 (47.73%), Postives = 116/176 (65.91%), Query Frame = 0


Query: 1   MLVKVLNEPSIDQPEMMEVQLTQPTWMDPIKNFLSGITPTDTSEARKVRRQATHYIVQDD 60
           +LVK+L+ PSI + +MMEV     +WMDPI+NFL G  P +  EA+K+RR+   Y+++D+
Sbjct: 235 VLVKILDNPSILELDMMEVDSKPLSWMDPIRNFLEGNIPINPKEAKKMRRKTARYLLRDE 294

Query: 61  KLYKRGFSLPLLQCLGPDEASYVIQEVHEGISRNHVGAR--------------------- 120
            +Y+RGFSLPLL+C+  ++ SYV++EVHEG+  NH+GAR                     
Sbjct: 295 TMYQRGFSLPLLKCISKEDESYVLKEVHEGVCGNHLGARSLSTKVIRQGYYWPTVDQDAK 354

Query: 121 -----CDNCPRFANGLQQSSELLTPISSRWPFAQWGLDLIGPLPTAKGQVKYVVVR 151
                CDNC RFAN + Q  ELLTPIS+ WPFAQWG+DLIGP P  KGQ K+ +++
Sbjct: 355 EFVKACDNCQRFANIIHQPPELLTPISTPWPFAQWGVDLIGPFPLGKGQTKFELLQ 410

The following BLAST results are available for this feature:

BLAST of Moc07g03430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156986.1	2.1e-46	53.41	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022158215.1	7.9e-46	53.41	uncharacterized protein LOC111024751 [Momordica charantia]	[more]
XP_022157896.1	1.2e-41	54.36	uncharacterized protein LOC111024502 [Momordica charantia]	[more]
XP_022152233.1	1.2e-41	54.36	uncharacterized protein LOC111020002 [Momordica charantia]	[more]
XP_022157626.1	4.5e-41	47.73	uncharacterized protein LOC111024288 [Momordica charantia]	[more]

BLAST of Moc07g03430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g03430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWM2	1.0e-46	53.41	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]
A0A6J1DV78	3.8e-46	53.41	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024751 PE=4 SV=1	[more]
A0A6J1DZH2	5.8e-42	54.36	uncharacterized protein LOC111024502 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DEB3	5.8e-42	54.36	uncharacterized protein LOC111020002 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DYR5	2.2e-41	47.73	uncharacterized protein LOC111024288 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc07g03430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g03430.1	Moc07g03430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process