Moc06g31120 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g31120
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr6: 23422217 .. 23424883 (+)
RNA-Seq ExpressionMoc06g31120
SyntenyMoc06g31120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTCGTGCTCGCAGAAGTCTGCTATCTCTGGAGCTCATTGTGCGTTGCTGGAGCTCATTGTGCGTCGCTGGAGTTCATGGTGCATCGTTGGAGTTCGTGGTGCGTCGCTGCCGTCTGTAGAGTTACCATCGGAATGGGTCGCTGGAGTTTATTGGAGAGAGAGAAAGAGGGAGTGGTGGTGGTGAGAGGTAGAAGATGAAGAAGAAGGTGACTCTATTTAGAGAGAGAAAGAAACTAACCGCGTACTATTCTCTTCATTCTTGGCTCCCTTTTCCTGCACTACAACCTTTTTTAAATACGCAAAAATATAACTGTAGCCTTGGGTCAAATAAAACTTAAGAAAAAAATGGAAGGGAAAGTGCATGGAACACCAAGTGGCCGAAGCTTTGACGAGGAAAATATCAAATTTTTTCAAATCAAATATTTGATTAAAATAAAATCTTTATTTTTTAATTCTTAATTTTATTAATAAAATGAAAATCTTTAAATTTTTTCAAATCTAACCTTTGATTAAAATAAAATCTTTATTTTTTTAATTCTTAATTTTATTAATAAAATCAAAATCTTTAAAGCAATCTAATTTTTAATTTAATTAAACTTTACCTTAAAAACAATAATAAGGTAAACTTATGACATTTTTAACCAAAACAATTAAAATAAAACTTAATAAAGTAAAATAAAATAATAATAAAAATATAAAATTAAGCCGGACTAAATACAATATCTACAAATTGGTTAAATATATTTGTTTTTTAGGAAACATTGAAGATTAGTGATCATAATGCGCCAGCCACATTATTCTGAAAGATCCTGCTTCACAATGTGCCACTCACATTCCATGTCCAGATTGTCGAACTGTGCATGACAACCTGTTGACCAAGTAATTGGTCTTTGATCTCCTATCCTAAAATCTCTACAACTAAAGTGGTTACCAACTTTCGATGGAATTCTCAACACTTTAGTATCTCCCAAGCCTATAAAATTGAGCTTCCAATAATCACTTCCACACACCTCATTTTTCATGTTTAGTTATTCATTTCCAAATTATTATCAAATTTTAGTTTTTTAGTTTTTTTCCCGTTTTTAAGTTTTGTTCTTTAAGTTATTTTTGTAATTGCTCTTTGCTTATTTATATGCAATTCAATTTATTCTAATTTTGTACTTTCTTCCCAATTTTAATGAGAATGAATTCTTTTGTAATGCATTATTTTGTTATCTTCTCTTGTTATTCTTTTTTTTTACTTCCATGAGTAGCTAAATTATTTCTTCTACCTCCTGCGAATTCTTAGTTCTTATAATTAATAATTACATCTATCAATGAGCACGTCGTATTACACTCCTTTTGTTTATCTTGATTGATATAATTATTCTAGCAACTTGTTTAAATCACATTAGTTTGAATTTAATTCTGAAAAGGTTAGAATCAAACAAATTTCATCAAGGTAAAACGGGAAGTTATTTAGAAATAAGAACTAAAACAAGAACCTAGACATAGGGTCTTTTACCCATTAAACGTATGTAAGTTGGAGTTTGCTTTATTTAGGATTCTAGTGTTTAGTAGACATGTGTAAATACTAGCGTAAGCTTCTAAACAAATCAAAAACGATATGTAATAAGAGTTGAACTAGTTTGCATAAATTGAGCGTAAATGCGGACACATTTGGTAGATGTAATTCATCTTTTTAGAACTAAATAGTCGTAGGGGTTGGCTTTTTAAATTCTAATTTTTCGTGTGTTTCTAAATCGTGTTCCGACAATTTCACCAATTTTTATCCTAAGCCCGATTGCTCATTCAAGCAGTTTGCAATTTTATTTTAAAAGAAAACTAGTCCCTGTGGAGACGAACTTGAAATATTTCTATATTATTACTTGTGATAGTGTGCACTTGCACTTTAACCTCGAGCTATTAAGTAGAGGCCCAACAAGTTTTTGGCGCTGTTGCCGGGGACTTTGTTCTTGTTTTAATTTCATTCTTTATGAATTGTTTTTGTGTGCGATCACTTCACCGTTTCTATTCTAAAAATATCACCTTATCTAAGCTCAAAAGTAAGCATTAGTGCATGAGTACAAATCCACACTTGCTACCATACGATTTAGAGATCGAGAAAACTTGCAAGAGGTTAAGGTGTGGACAAAGACTCAGAAAACAACACGCAAAAATCCAAAAAGAGAAAGAGAAAGAATTTGAGGAAGTAATCACCAAGATGGTAGAAGAAGTGCAAAATCCAATCTTACTGGCCGATCGTAGAGATATTGCAATGCACGACTATGCGGCCACTACTTTACAGAACTTAAATCCGAGCATTACAAATCCAATCCCAGAAGATGCCCAATTTGAATTCAAACCGATGATGCTTTAAATGCTTAACACTATAGGCCAGTTTGCGGGACTCTCACATGAGGATCCACATTCTCACTTTAAATTATTTACTCAAGTGGCAAATTCTTGTAGATTACCAGGGATATCGACAATGCATTAAGACTAAAATTATTCCCTTTTTTCCTTTTAGGTCAAGCAACAGCATGGTTGAATGCTTTCGCTAAAAACTTCATTACTACAGGTGAAACCATGGTGGACAAGTTCCTTGCGAAGTATTTTCCACCCATACGAAACACGTACAAAAGGGAAGAAATCATCACCTTTAGGCAAAAGGGAGAATGA

mRNA sequence

ATGCCGTTCGTGCTCGCAGAAGTCTGCTATCTCTGGAGCTCATTGTGCGTTGCTGGAGCTCATTGTGCGTCGCTGGAGTTCATGGTGCATCGTTGGAGTTCGTGGTGCGTCGCTGCCGTCTGTAGAGTTACCATCGGAATGGGTCGCTGGAGTTTATTGGAGAGAGAGAAAGAGGGAGTGGTGGTGGTGAGAGGTCAAGCAACAGCATGGTTGAATGCTTTCGCTAAAAACTTCATTACTACAGGTGAAACCATGGTGGACAAGTTCCTTGCGAAGTATTTTCCACCCATACGAAACACGTACAAAAGGGAAGAAATCATCACCTTTAGGCAAAAGGGAGAATGA

Coding sequence (CDS)

ATGCCGTTCGTGCTCGCAGAAGTCTGCTATCTCTGGAGCTCATTGTGCGTTGCTGGAGCTCATTGTGCGTCGCTGGAGTTCATGGTGCATCGTTGGAGTTCGTGGTGCGTCGCTGCCGTCTGTAGAGTTACCATCGGAATGGGTCGCTGGAGTTTATTGGAGAGAGAGAAAGAGGGAGTGGTGGTGGTGAGAGGTCAAGCAACAGCATGGTTGAATGCTTTCGCTAAAAACTTCATTACTACAGGTGAAACCATGGTGGACAAGTTCCTTGCGAAGTATTTTCCACCCATACGAAACACGTACAAAAGGGAAGAAATCATCACCTTTAGGCAAAAGGGAGAATGA

Protein sequence

MPFVLAEVCYLWSSLCVAGAHCASLEFMVHRWSSWCVAAVCRVTIGMGRWSLLEREKEGVVVVRGQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQKGE
Homology
[Close]
BLAST of Moc06g31120 vs. NCBI nr
Match: XP_022159235.1 (uncharacterized protein LOC111025653 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 63  VRGQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           V GQATAWLNAF  + ITT   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 102 VSGQATAWLNAFPSDTITTWSDMVDKFLVKYFPPTRNADVREEIISFRQK 151

[Close]
BLAST of Moc06g31120 vs. NCBI nr
Match: XP_022157400.1 (uncharacterized protein LOC111024107 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 35/48 (72.92%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQATAWLNAF    ITT   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 104 GQATAWLNAFPSGTITTWSDMVDKFLVKYFPPTRNADVREEIISFRQK 151

[Close]
BLAST of Moc06g31120 vs. NCBI nr
Match: XP_022142953.1 (uncharacterized protein LOC111012947 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQATAWLNAF  + I T   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 149 GQATAWLNAFPSBTIXTXSDMVDKFLVKYFPPTRNADVREEIISFRQK 196

[Close]
BLAST of Moc06g31120 vs. NCBI nr
Match: XP_022159074.1 (uncharacterized protein LOC111025516 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQA AWLNAF  + ITT   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 149 GQAIAWLNAFLSDTITTWSDMVDKFLVKYFPPTRNADVREEIISFRQK 196

[Close]
BLAST of Moc06g31120 vs. NCBI nr
Match: XP_022153526.1 (uncharacterized protein LOC111021009 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQATAWLNAF  + I +  TMVDKFLAKYFPP +N   REEII+FRQ+
Sbjct: 55  GQATAWLNAFLPDSINSWGTMVDKFLAKYFPPTKNADVREEIISFRQR 102

[Close]
BLAST of Moc06g31120 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 63  VRGQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           V GQATAWLNAF  + ITT   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 102 VSGQATAWLNAFPSDTITTWSDMVDKFLVKYFPPTRNADVREEIISFRQK 151

[Close]
BLAST of Moc06g31120 vs. ExPASy TrEMBL
Match: A0A6J1DSZ5 (uncharacterized protein LOC111024107 OS=Momordica charantia OX=3673 GN=LOC111024107 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 35/48 (72.92%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQATAWLNAF    ITT   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 104 GQATAWLNAFPSGTITTWSDMVDKFLVKYFPPTRNADVREEIISFRQK 151

[Close]
BLAST of Moc06g31120 vs. ExPASy TrEMBL
Match: A0A6J1CPJ3 (uncharacterized protein LOC111012947 OS=Momordica charantia OX=3673 GN=LOC111012947 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQATAWLNAF  + I T   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 149 GQATAWLNAFPSDTIXTXSDMVDKFLVKYFPPTRNADVREEIISFRQK 196

[Close]
BLAST of Moc06g31120 vs. ExPASy TrEMBL
Match: A0A6J1E1A9 (uncharacterized protein LOC111025516 OS=Momordica charantia OX=3673 GN=LOC111025516 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQA AWLNAF  + ITT   MVDKFL KYFPP RN   REEII+FRQK
Sbjct: 149 GQAIAWLNAFLSDTITTWSDMVDKFLVKYFPPTRNADVREEIISFRQK 196

[Close]
BLAST of Moc06g31120 vs. ExPASy TrEMBL
Match: A0A6J1DKX0 (uncharacterized protein LOC111021009 OS=Momordica charantia OX=3673 GN=LOC111021009 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 65  GQATAWLNAFAKNFITTGETMVDKFLAKYFPPIRNTYKREEIITFRQK 113
           GQATAWLNAF  + I +  TMVDKFLAKYFPP +N   REEII+FRQ+
Sbjct: 55  GQATAWLNAFLPDSINSWGTMVDKFLAKYFPPTKNADVREEIISFRQR 102

The following BLAST results are available for this feature:
BLAST of Moc06g31120 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159235.11.3e-0972.00uncharacterized protein LOC111025653 [Momordica charantia][more]
XP_022157400.13.7e-0972.92uncharacterized protein LOC111024107 [Momordica charantia][more]
XP_022142953.14.8e-0970.83uncharacterized protein LOC111012947 [Momordica charantia][more]
XP_022159074.11.4e-0870.83uncharacterized protein LOC111025516 [Momordica charantia][more]
XP_022153526.12.4e-0868.75uncharacterized protein LOC111021009 [Momordica charantia][more]
BLAST of Moc06g31120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g31120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DY396.2e-1072.00uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DSZ51.8e-0972.92uncharacterized protein LOC111024107 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1CPJ35.2e-0970.83uncharacterized protein LOC111012947 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1E1A96.8e-0970.83uncharacterized protein LOC111025516 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DKX01.2e-0868.75uncharacterized protein LOC111021009 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
BLAST of Moc06g31120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g31120.1Moc06g31120.1mRNA