Moc06g17650 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g17650
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr6: 13830576 .. 13831370 (+)
RNA-Seq Expression	Moc06g17650
Synteny	Moc06g17650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCATCGGTTGCGCACAATGGAAGAGATGTACGTCGAGGCAACGCGTGCTAACCGAACTGCGTCTCCCTCTATAGCCCCGGGCGCACCCGGTGAAAAGGGAGCTCCATCTATCCAACCTGGCGATCGCGAGCCCATTCCCAACGATGAAGGAGTGGATTACAGCTTGCGGGATAACGATATGAGAAAGCATCTCACTGAAAAGAAGAAGAGAGCATCTCGGGAGCCGGAAGACTCTCCTTCCTACTCCCGAGAATTCTCCAACTCGAACCTAAAGGCTCAATCGAAATACAAGCCTCTAACACCAGAAGTTGTGATCACCAGGGAAGAATTCGACATGATGAAACACAGGTTCGATGAGCAGGTCGAGGCACTCAAAGCCAGGTGCGAGAAGAAGGAAAGCTCATTTAACGATGGCGACTTGGGAGAATCGCCATTCACTTCGGATATTATGGAGGCCCCAATCCCTCCGAAGTTCAAGACTCCCACTATGAAGCCCTATGATGGGTCTAAGGACCCCAAAGACTATGTTGAGGTCTTCGAGAGCCTCATGGATTTTCAAGCGACAATGGATGCAATAAAATGCCACGCCTTCCAGATCGCTCTTACCGGCAGCGCACGCCTGTGGTACCGAAGACTGCCGGCTAGGTCGATATCGACCTATTCTCAGCTGAGAAAGGAGTTCATTAGCCAGTTCCCTTCTCGACATTACGATAGAAAAACAGCGACTCACCTCGCCATCATTAGACAGAAGGAAGGAGAGACGCTGAGAGAATATGTCACACGGTTCTAG

mRNA sequence

ATGCGCCATCGGTTGCGCACAATGGAAGAGATGTACGTCGAGGCAACGCGTGCTAACCGAACTGCGTCTCCCTCTATAGCCCCGGGCGCACCCGGTGAAAAGGGAGCTCCATCTATCCAACCTGGCGATCGCGAGCCCATTCCCAACGATGAAGGAGTGGATTACAGCTTGCGGGATAACGATATGAGAAAGCATCTCACTGAAAAGAAGAAGAGAGCATCTCGGGAGCCGGAAGACTCTCCTTCCTACTCCCGAGAATTCTCCAACTCGAACCTAAAGGCTCAATCGAAATACAAGCCTCTAACACCAGAAGTTGTGATCACCAGGGAAGAATTCGACATGATGAAACACAGGTTCGATGAGCAGGTCGAGGCACTCAAAGCCAGGTGCGAGAAGAAGGAAAGCTCATTTAACGATGGCGACTTGGGAGAATCGCCATTCACTTCGGATATTATGGAGGCCCCAATCCCTCCGAAGTTCAAGACTCCCACTATGAAGCCCTATGATGGGTCTAAGGACCCCAAAGACTATGTTGAGGTCTTCGAGAGCCTCATGGATTTTCAAGCGACAATGGATGCAATAAAATGCCACGCCTTCCAGATCGCTCTTACCGGCAGCGCACGCCTGTGGTACCGAAGACTGCCGGCTAGGTCGATATCGACCTATTCTCAGCTGAGAAAGGAGTTCATTAGCCAGTTCCCTTCTCGACATTACGATAGAAAAACAGCGACTCACCTCGCCATCATTAGACAGAAGGAAGGAGAGACGCTGAGAGAATATGTCACACGGTTCTAG

Coding sequence (CDS)

ATGCGCCATCGGTTGCGCACAATGGAAGAGATGTACGTCGAGGCAACGCGTGCTAACCGAACTGCGTCTCCCTCTATAGCCCCGGGCGCACCCGGTGAAAAGGGAGCTCCATCTATCCAACCTGGCGATCGCGAGCCCATTCCCAACGATGAAGGAGTGGATTACAGCTTGCGGGATAACGATATGAGAAAGCATCTCACTGAAAAGAAGAAGAGAGCATCTCGGGAGCCGGAAGACTCTCCTTCCTACTCCCGAGAATTCTCCAACTCGAACCTAAAGGCTCAATCGAAATACAAGCCTCTAACACCAGAAGTTGTGATCACCAGGGAAGAATTCGACATGATGAAACACAGGTTCGATGAGCAGGTCGAGGCACTCAAAGCCAGGTGCGAGAAGAAGGAAAGCTCATTTAACGATGGCGACTTGGGAGAATCGCCATTCACTTCGGATATTATGGAGGCCCCAATCCCTCCGAAGTTCAAGACTCCCACTATGAAGCCCTATGATGGGTCTAAGGACCCCAAAGACTATGTTGAGGTCTTCGAGAGCCTCATGGATTTTCAAGCGACAATGGATGCAATAAAATGCCACGCCTTCCAGATCGCTCTTACCGGCAGCGCACGCCTGTGGTACCGAAGACTGCCGGCTAGGTCGATATCGACCTATTCTCAGCTGAGAAAGGAGTTCATTAGCCAGTTCCCTTCTCGACATTACGATAGAAAAACAGCGACTCACCTCGCCATCATTAGACAGAAGGAAGGAGAGACGCTGAGAGAATATGTCACACGGTTCTAG

Protein sequence

MRHRLRTMEEMYVEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF

Homology

[Close]

BLAST of Moc06g17650 vs. NCBI nr
Match: XP_022155139.1 (uncharacterized protein LOC111022280 [Momordica charantia])

HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-109
Identity = 207/230 (90.00%), Postives = 213/230 (92.61%), Query Frame = 0


Query: 28  PGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREF 87
           PGAPGEKGAPSIQPG+REPIPNDEGVDYSLRDND+RKHLT+KKK+AS EPEDS SYSREF
Sbjct: 5   PGAPGEKGAPSIQPGNREPIPNDEGVDYSLRDNDLRKHLTDKKKKASWEPEDSLSYSREF 64

Query: 88  SNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPF 147
           SNSNLKAQSKYKPL PE VI REEFD+MKHRFDEQVEALKARCEKKES F+D DLGESPF
Sbjct: 65  SNSNLKAQSKYKPLIPEAVINREEFDLMKHRFDEQVEALKARCEKKESPFDDDDLGESPF 124

Query: 148 TSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSA 207
           TSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFE LMDFQA  DAIKC AFQIALTGSA
Sbjct: 125 TSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCLAFQIALTGSA 184

Query: 208 RLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETL 258
           RLW RRLPARSISTYSQLRKEFI QF  RHYDRKTATHLA IRQKE ETL
Sbjct: 185 RLWCRRLPARSISTYSQLRKEFIGQFSFRHYDRKTATHLATIRQKEDETL 234

[Close]

BLAST of Moc06g17650 vs. NCBI nr
Match: XP_022157897.1 (uncharacterized protein LOC111024503 [Momordica charantia])

HSP 1 Score: 345.5 bits (885), Expect = 4.0e-91
Identity = 175/193 (90.67%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 72  RASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCE 131
           RASRE EDSPSYSREFSNS+ KAQSKYKPLTPE VITREEFD+MKHRFDEQVEALKA+CE
Sbjct: 468 RASRESEDSPSYSREFSNSDFKAQSKYKPLTPEAVITREEFDLMKHRFDEQVEALKAKCE 527

Query: 132 KKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATM 191
           KKE SF+DGDLGESPFTSDI+E PIPPKFKTPTMK YD SKDPKDYVEVFE LMDFQA  
Sbjct: 528 KKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDPKDYVEVFEGLMDFQAAT 587

Query: 192 DAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQ 251
           DAIKC AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRHYDRKTATHLA IRQ
Sbjct: 588 DAIKCSAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRKTATHLATIRQ 647

Query: 252 KEGETLREYVTRF 265
           KEGETLREYVTRF
Sbjct: 648 KEGETLREYVTRF 660

[Close]

BLAST of Moc06g17650 vs. NCBI nr
Match: XP_022151719.1 (uncharacterized protein LOC111019634 [Momordica charantia])

HSP 1 Score: 313.5 bits (802), Expect = 1.7e-81
Identity = 175/267 (65.54%), Postives = 201/267 (75.28%), Query Frame = 0


Query: 1   MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSL 60
           MR ++ TME+MY   V+A  A   +   +A     E+    + P  +      E  +Y+ 
Sbjct: 1   MRTQMCTMEKMYSEMVQAAGARSRSENRVARNDMHEQRGHHLGPVKKGHPEGGEDEEYTH 60

Query: 61  RDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKH 120
           +  D+R+HL  K+  + R+ + SPS S    NSN +A+S Y P+TPE VITREEFD +K 
Sbjct: 61  QRGDLREHLNRKRSSSLRKGQ-SPSCSHR--NSNQQAESSYNPITPEGVITREEFDQLKS 120

Query: 121 RFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDY 180
           +FD QVEALKA+CEKKESSF+DGDLGESPFTSDI+EA IP KFKTPTMKPYDGSKDPKDY
Sbjct: 121 KFDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDPKDY 180

Query: 181 VEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRH 240
           VEVFE LMDFQA  DAIKC  FQIALTGSARLWYRRLPARSISTYSQLRKEFI QF SRH
Sbjct: 181 VEVFEGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEFIIQFSSRH 240

Query: 241 YDRKTATHLAIIRQKEGETLREYVTRF 265
           YDRKTATHL  IRQKEGETLREYVTRF
Sbjct: 241 YDRKTATHLTTIRQKEGETLREYVTRF 264

[Close]

BLAST of Moc06g17650 vs. NCBI nr
Match: XP_022156088.1 (uncharacterized protein LOC111023060 [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 4.6e-79
Identity = 169/267 (63.30%), Postives = 193/267 (72.28%), Query Frame = 0


Query: 1   MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSL 60
           MR ++RTMEEMY   V+   A   +   +      E+G     P D E +          
Sbjct: 4   MRTQMRTMEEMYNKMVQIAGARSRSGDQVVHEDVHEQGDLHCDPVDEEHL---------- 63

Query: 61  RDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKH 120
              D+R HL  K+  + R    S  + +   NSN +A+S Y P+ PE VITREEF+ +K 
Sbjct: 64  -GGDLRDHLNRKRNSSHRGERTSTYWHK---NSNQQAESSYNPIAPEGVITREEFNQLKS 123

Query: 121 RFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDY 180
           +FD QVEALK RCEKKES+F+DGDLGESPFTSDI+EA IPPKFKTPTMK YDGSKDPKDY
Sbjct: 124 KFDAQVEALKVRCEKKESAFDDGDLGESPFTSDILEASIPPKFKTPTMKSYDGSKDPKDY 183

Query: 181 VEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRH 240
           VEVFE LMDFQA  DAIKC AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRH
Sbjct: 184 VEVFEGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRH 243

Query: 241 YDRKTATHLAIIRQKEGETLREYVTRF 265
           YDRKT THLA IRQKEG+TL+EY+TRF
Sbjct: 244 YDRKTTTHLATIRQKEGKTLKEYITRF 256

[Close]

BLAST of Moc06g17650 vs. NCBI nr
Match: XP_022155128.1 (uncharacterized protein LOC111022267 [Momordica charantia])

HSP 1 Score: 302.0 bits (772), Expect = 5.1e-78
Identity = 157/214 (73.36%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 51  EGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITRE 110
           E  +Y+ +  D+R+HL  K+  + R+ + SPS S    NSN +A+S Y P+TP+ VITRE
Sbjct: 33  EDEEYTHQRGDLREHLNRKRSSSLRKGQ-SPSSSHR--NSNQQAESSYNPITPKRVITRE 92

Query: 111 EFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDG 170
           EFD +K +FD QVEALKA CEKKESSF+DGDLGE PFT DI+EAPI PKFKTPTMKPYDG
Sbjct: 93  EFDQLKSKFDAQVEALKANCEKKESSFDDGDLGELPFTLDILEAPIHPKFKTPTMKPYDG 152

Query: 171 SKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFI 230
           SK+PKDYV+VFE LM+FQA  DAIKC AFQIA TGSARLWYRRLPARSISTYSQLRKEFI
Sbjct: 153 SKNPKDYVKVFEGLMNFQAATDAIKCRAFQIAFTGSARLWYRRLPARSISTYSQLRKEFI 212

Query: 231 SQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF 265
           SQF SR+YDRKTATHLA IRQK+GETLREYVTRF
Sbjct: 213 SQFSSRYYDRKTATHLATIRQKKGETLREYVTRF 243

[Close]

BLAST of Moc06g17650 vs. ExPASy TrEMBL
Match: A0A6J1DPC9 (uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022280 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 7.1e-110
Identity = 207/230 (90.00%), Postives = 213/230 (92.61%), Query Frame = 0


Query: 28  PGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREF 87
           PGAPGEKGAPSIQPG+REPIPNDEGVDYSLRDND+RKHLT+KKK+AS EPEDS SYSREF
Sbjct: 5   PGAPGEKGAPSIQPGNREPIPNDEGVDYSLRDNDLRKHLTDKKKKASWEPEDSLSYSREF 64

Query: 88  SNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPF 147
           SNSNLKAQSKYKPL PE VI REEFD+MKHRFDEQVEALKARCEKKES F+D DLGESPF
Sbjct: 65  SNSNLKAQSKYKPLIPEAVINREEFDLMKHRFDEQVEALKARCEKKESPFDDDDLGESPF 124

Query: 148 TSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSA 207
           TSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFE LMDFQA  DAIKC AFQIALTGSA
Sbjct: 125 TSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCLAFQIALTGSA 184

Query: 208 RLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETL 258
           RLW RRLPARSISTYSQLRKEFI QF  RHYDRKTATHLA IRQKE ETL
Sbjct: 185 RLWCRRLPARSISTYSQLRKEFIGQFSFRHYDRKTATHLATIRQKEDETL 234

[Close]

BLAST of Moc06g17650 vs. ExPASy TrEMBL
Match: A0A6J1DVR0 (uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024503 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91
Identity = 175/193 (90.67%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 72  RASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCE 131
           RASRE EDSPSYSREFSNS+ KAQSKYKPLTPE VITREEFD+MKHRFDEQVEALKA+CE
Sbjct: 468 RASRESEDSPSYSREFSNSDFKAQSKYKPLTPEAVITREEFDLMKHRFDEQVEALKAKCE 527

Query: 132 KKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATM 191
           KKE SF+DGDLGESPFTSDI+E PIPPKFKTPTMK YD SKDPKDYVEVFE LMDFQA  
Sbjct: 528 KKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDPKDYVEVFEGLMDFQAAT 587

Query: 192 DAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQ 251
           DAIKC AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRHYDRKTATHLA IRQ
Sbjct: 588 DAIKCSAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRKTATHLATIRQ 647

Query: 252 KEGETLREYVTRF 265
           KEGETLREYVTRF
Sbjct: 648 KEGETLREYVTRF 660

[Close]

BLAST of Moc06g17650 vs. ExPASy TrEMBL
Match: A0A6J1DDW5 (uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019634 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 8.2e-82
Identity = 175/267 (65.54%), Postives = 201/267 (75.28%), Query Frame = 0


Query: 1   MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSL 60
           MR ++ TME+MY   V+A  A   +   +A     E+    + P  +      E  +Y+ 
Sbjct: 1   MRTQMCTMEKMYSEMVQAAGARSRSENRVARNDMHEQRGHHLGPVKKGHPEGGEDEEYTH 60

Query: 61  RDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKH 120
           +  D+R+HL  K+  + R+ + SPS S    NSN +A+S Y P+TPE VITREEFD +K 
Sbjct: 61  QRGDLREHLNRKRSSSLRKGQ-SPSCSHR--NSNQQAESSYNPITPEGVITREEFDQLKS 120

Query: 121 RFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDY 180
           +FD QVEALKA+CEKKESSF+DGDLGESPFTSDI+EA IP KFKTPTMKPYDGSKDPKDY
Sbjct: 121 KFDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDPKDY 180

Query: 181 VEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRH 240
           VEVFE LMDFQA  DAIKC  FQIALTGSARLWYRRLPARSISTYSQLRKEFI QF SRH
Sbjct: 181 VEVFEGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEFIIQFSSRH 240

Query: 241 YDRKTATHLAIIRQKEGETLREYVTRF 265
           YDRKTATHL  IRQKEGETLREYVTRF
Sbjct: 241 YDRKTATHLTTIRQKEGETLREYVTRF 264

[Close]

BLAST of Moc06g17650 vs. ExPASy TrEMBL
Match: A0A6J1DPN4 (uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023060 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.2e-79
Identity = 169/267 (63.30%), Postives = 193/267 (72.28%), Query Frame = 0


Query: 1   MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSL 60
           MR ++RTMEEMY   V+   A   +   +      E+G     P D E +          
Sbjct: 4   MRTQMRTMEEMYNKMVQIAGARSRSGDQVVHEDVHEQGDLHCDPVDEEHL---------- 63

Query: 61  RDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKH 120
              D+R HL  K+  + R    S  + +   NSN +A+S Y P+ PE VITREEF+ +K 
Sbjct: 64  -GGDLRDHLNRKRNSSHRGERTSTYWHK---NSNQQAESSYNPIAPEGVITREEFNQLKS 123

Query: 121 RFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDY 180
           +FD QVEALK RCEKKES+F+DGDLGESPFTSDI+EA IPPKFKTPTMK YDGSKDPKDY
Sbjct: 124 KFDAQVEALKVRCEKKESAFDDGDLGESPFTSDILEASIPPKFKTPTMKSYDGSKDPKDY 183

Query: 181 VEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRH 240
           VEVFE LMDFQA  DAIKC AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRH
Sbjct: 184 VEVFEGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRH 243

Query: 241 YDRKTATHLAIIRQKEGETLREYVTRF 265
           YDRKT THLA IRQKEG+TL+EY+TRF
Sbjct: 244 YDRKTTTHLATIRQKEGKTLKEYITRF 256

[Close]

BLAST of Moc06g17650 vs. ExPASy TrEMBL
Match: A0A6J1DM55 (uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022267 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.5e-78
Identity = 157/214 (73.36%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 51  EGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITRE 110
           E  +Y+ +  D+R+HL  K+  + R+ + SPS S    NSN +A+S Y P+TP+ VITRE
Sbjct: 33  EDEEYTHQRGDLREHLNRKRSSSLRKGQ-SPSSSHR--NSNQQAESSYNPITPKRVITRE 92

Query: 111 EFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDG 170
           EFD +K +FD QVEALKA CEKKESSF+DGDLGE PFT DI+EAPI PKFKTPTMKPYDG
Sbjct: 93  EFDQLKSKFDAQVEALKANCEKKESSFDDGDLGELPFTLDILEAPIHPKFKTPTMKPYDG 152

Query: 171 SKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFI 230
           SK+PKDYV+VFE LM+FQA  DAIKC AFQIA TGSARLWYRRLPARSISTYSQLRKEFI
Sbjct: 153 SKNPKDYVKVFEGLMNFQAATDAIKCRAFQIAFTGSARLWYRRLPARSISTYSQLRKEFI 212

Query: 231 SQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF 265
           SQF SR+YDRKTATHLA IRQK+GETLREYVTRF
Sbjct: 213 SQFSSRYYDRKTATHLATIRQKKGETLREYVTRF 243

The following BLAST results are available for this feature:

BLAST of Moc06g17650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155139.1	1.5e-109	90.00	uncharacterized protein LOC111022280 [Momordica charantia]	[more]
XP_022157897.1	4.0e-91	90.67	uncharacterized protein LOC111024503 [Momordica charantia]	[more]
XP_022151719.1	1.7e-81	65.54	uncharacterized protein LOC111019634 [Momordica charantia]	[more]
XP_022156088.1	4.6e-79	63.30	uncharacterized protein LOC111023060 [Momordica charantia]	[more]
XP_022155128.1	5.1e-78	73.36	uncharacterized protein LOC111022267 [Momordica charantia]	[more]

BLAST of Moc06g17650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g17650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPC9	7.1e-110	90.00	uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DVR0	1.9e-91	90.67	uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DDW5	8.2e-82	65.54	uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DPN4	2.2e-79	63.30	uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DM55	2.5e-78	73.36	uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc06g17650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..82
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 199..264 e-value: 1.6E-11 score: 44.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g17650.1	Moc06g17650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity