Moc06g14570 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g14570
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Locationchr6: 11427936 .. 11428361 (-)
RNA-Seq ExpressionMoc06g14570
SyntenyMoc06g14570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCATTGAAGATTGACGTGGAGAAATTTTGTCAAAGGATCAACTTCGACTTGTGGCAAGTTCAAGTCAAGGACGTGCTTATACAATATGGATTACACAATGCATTGAAAGGAAGATCGATTGATTGTGCTTCTGAAAAACTAAGCGATGATGGTGGTTTAGTGGAGTTCAGTAGTGGTTCCAGCAAATGTTTTAAGAAATCCAGCATGAATGACGAAGATTAAGAGGAGATGGATGTGAGGGCTGCAAGCGTGATACAAACAAGTTTGGTTAAGAATATTCTTGTGAATGTGTATGGAATTTCGACAGTCAAAGAACTTTGGGAGAAGCTTGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGATGTACCTGAAGGGGCAGTTTCGCACTTACGAAAATTTCAGATCATTTGAGTAA

mRNA sequence

ATGAGTTCATTGAAGATTGACGTGGAGAAATTTTGTCAAAGGATCAACTTCGACTTGTGGCAAGTTCAAGTCAAGGACGTGCTTATACAATATGGATTACACAATGCATTGAAAGGAAGATCGATTGATTGTGCTTCTGAAAAACTAAGCGATGATGGTGGTTTAGTGGAGTTCAGTAGTGGTTCCAGCAAATTCAAAGAACTTTGGGAGAAGCTTGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGATGTACCTGAAGGGGCAGTTTCGCACTTACGAAAATTTCAGATCATTTGAGTAA

Coding sequence (CDS)

ATGAGTTCATTGAAGATTGACGTGGAGAAATTTTGTCAAAGGATCAACTTCGACTTGTGGCAAGTTCAAGTCAAGGACGTGCTTATACAATATGGATTACACAATGCATTGAAAGGAAGATCGATTGATTGTGCTTCTGAAAAACTAAGCGATGATGGTGGTTTAGTGGAGTTCAGTAGTGGTTCCAGCAAATTCAAAGAACTTTGGGAGAAGCTTGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGATGTACCTGAAGGGGCAGTTTCGCACTTACGAAAATTTCAGATCATTTGAGTAA

Protein sequence

MSSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDGGLVEFSSGSSKFKELWEKLEALYQAKGISNRMYLKGQFRTYENFRSFE
Homology
BLAST of Moc06g14570 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 71/135 (52.59%), Postives = 77/135 (57.04%), Query Frame = 0

Query: 1   MSSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDGGLVEFSS 60
           MS +KIDVEKF   INF LWQVQVKDVLIQ  LH ALKGR  + ASEKLSDDGG +E S 
Sbjct: 299 MSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESSG 358

Query: 61  GSSK----------------------------------------FKELWEKLEALYQAKG 96
           GSS+                                         KELWEKLEALYQAKG
Sbjct: 359 GSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKG 418

BLAST of Moc06g14570 vs. NCBI nr
Match: ESR45251.1 (hypothetical protein CICLE_v10003098mg [Citrus clementina] >GAY69372.1 hypothetical protein CUMW_271400 [Citrus unshiu])

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 2  SSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDGGLVEFSSG 61
          S +K ++EKF  RINF LWQVQVKDVLIQ GLH ALKG+    +             +SG
Sbjct: 8  SPVKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKGKPSPAS-------------NSG 67

Query: 62 SSK-FKELWEKLEALYQAKGISNRMYLKGQFRT 94
          S K  KELWEKLE LY+ K ISNR+YLK +F T
Sbjct: 68 SGKTTKELWEKLEKLYRTKSISNRLYLKERFHT 87

BLAST of Moc06g14570 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15
Identity = 58/114 (50.88%), Postives = 64/114 (56.14%), Query Frame = 0

Query: 2   SSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLS---DDGGLVEF 61
           S++K DVEKF  RINF LWQVQVKDVLIQ GLH AL+G+     SEK      DG   E 
Sbjct: 6   SAVKFDVEKFDGRINFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEKSESSMSDGDWEEL 65

Query: 62  S-------------------SGSSKFKELWEKLEALYQAKGISNRMYLKGQFRT 94
                                G S  KELW+KLE LYQAKGISN + LK QF T
Sbjct: 66  DLRAASTIRLSLAKNVLANVQGISTAKELWKKLEGLYQAKGISNWLMLKEQFHT 119

BLAST of Moc06g14570 vs. NCBI nr
Match: KAG7577502.1 (F-box associated domain type 1 [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 2   SSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDG-------- 61
           + +K+++EKF  RINF LWQVQVKD+LIQ+GLH ALKG+       +    G        
Sbjct: 322 TGIKMEIEKFDGRINFGLWQVQVKDLLIQHGLHKALKGKPAPVTGTESGKIGISDGDWED 381

Query: 62  ---------------GLVEFSSGSSKFKELWEKLEALYQAKGISNRMYLKGQFRT 94
                           ++    G S  KELWEKLE LYQAKG+SNR+YLK +F T
Sbjct: 382 LDLRAASAIRLCLAKNILANVHGISTAKELWEKLEELYQAKGVSNRVYLKEKFHT 436

BLAST of Moc06g14570 vs. NCBI nr
Match: KAF7810708.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 90.5 bits (223), Expect = 8.9e-15
Identity = 57/114 (50.00%), Postives = 63/114 (55.26%), Query Frame = 0

Query: 2   SSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLS---DDGGLVEF 61
           S++K DVEKF  RINF  WQVQVKDVLIQ GL  AL+G+     SEK      DG   E 
Sbjct: 54  SAMKFDVEKFDGRINFGWWQVQVKDVLIQSGLQKALEGKVSSKDSEKSESSMSDGDWEEL 113

Query: 62  S-------------------SGSSKFKELWEKLEALYQAKGISNRMYLKGQFRT 94
                                G S  KELW+KLE LYQAKGISNR+ LK QF T
Sbjct: 114 DLRAASTIRLCLAKNVLANVQGISTAKELWKKLEGLYQAKGISNRLLLKEQFHT 167

BLAST of Moc06g14570 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 33/106 (31.13%), Postives = 53/106 (50.00%), Query Frame = 0

Query: 1   MSSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDGGLVEFSS 60
           MS +K +V KF     F  WQ +++D+LIQ GLH  L   S    + K  D   L E ++
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 61  GSSKF----------------KELWEKLEALYQAKGISNRMYLKGQ 91
            + +                 + +W +LE+LY +K ++N++YLK Q
Sbjct: 61  SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

BLAST of Moc06g14570 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.6e-23
Identity = 71/135 (52.59%), Postives = 77/135 (57.04%), Query Frame = 0

Query: 1   MSSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDGGLVEFSS 60
           MS +KIDVEKF   INF LWQVQVKDVLIQ  LH ALKGR  + ASEKLSDDGG +E S 
Sbjct: 299 MSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESSG 358

Query: 61  GSSK----------------------------------------FKELWEKLEALYQAKG 96
           GSS+                                         KELWEKLEALYQAKG
Sbjct: 359 GSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKG 418

BLAST of Moc06g14570 vs. ExPASy TrEMBL
Match: V4T6T3 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.7e-16
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 2  SSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDGGLVEFSSG 61
          S +K ++EKF  RINF LWQVQVKDVLIQ GLH ALKG+    +             +SG
Sbjct: 8  SPVKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKGKPSPAS-------------NSG 67

Query: 62 SSK-FKELWEKLEALYQAKGISNRMYLKGQFRT 94
          S K  KELWEKLE LY+ K ISNR+YLK +F T
Sbjct: 68 SGKTTKELWEKLEKLYRTKSISNRLYLKERFHT 87

BLAST of Moc06g14570 vs. ExPASy TrEMBL
Match: A0A2H5QXN2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.7e-16
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 2  SSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDGGLVEFSSG 61
          S +K ++EKF  RINF LWQVQVKDVLIQ GLH ALKG+    +             +SG
Sbjct: 8  SPVKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKGKPSPAS-------------NSG 67

Query: 62 SSK-FKELWEKLEALYQAKGISNRMYLKGQFRT 94
          S K  KELWEKLE LY+ K ISNR+YLK +F T
Sbjct: 68 SGKTTKELWEKLEKLYRTKSISNRLYLKERFHT 87

BLAST of Moc06g14570 vs. ExPASy TrEMBL
Match: A0A444X3K2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 0

Query: 2   SSLKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASE-------------K 61
           S++K+++EKF  RINF LWQ+QVKDVLIQ GLH ALK +      E             +
Sbjct: 45  SAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALKKKISGIKDEEWEELDLRAASAIR 104

Query: 62  LSDDGGLVEFSSGSSKFKELWEKLEALYQAKGISNRMYLKGQF 92
           L     ++    G    KELW+KLE LYQAKGISNR+ LK QF
Sbjct: 105 LCLAKNVLANVQGMKIAKELWDKLEGLYQAKGISNRLLLKEQF 147

BLAST of Moc06g14570 vs. ExPASy TrEMBL
Match: A0A2P5FY52 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_016960 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14
Identity = 51/108 (47.22%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 4   LKIDVEKFCQRINFDLWQVQVKDVLIQYGLHNALKGRSIDCASEKLSDDG---------- 63
           +K DVEKF   INF LW VQV+D+LIQ GLHN LKGR       K+SD+           
Sbjct: 8   IKADVEKFDGNINFGLWHVQVRDLLIQSGLHNILKGRD-KFGKSKISDEDWKDLDERAAS 67

Query: 64  --------GLVEFSSGSSKFKELWEKLEALYQAKGISNRMYLKGQFRT 94
                    ++    G S  K+LWEKL  LY+AKG+SNR+YLK QF T
Sbjct: 68  AIRMCLAKNILVNMLGISTAKDLWEKLRKLYRAKGVSNRVYLKKQFYT 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139673.11.2e-2252.59uncharacterized protein LOC111010521 [Momordica charantia][more]
ESR45251.11.8e-1555.91hypothetical protein CICLE_v10003098mg [Citrus clementina] >GAY69372.1 hypotheti... [more]
KAF7802225.12.3e-1550.88cytochrome p450 [Senna tora][more]
KAG7577502.14.0e-1544.35F-box associated domain type 1 [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAF7810708.18.9e-1550.00cytochrome p450 [Senna tora][more]
Match NameE-valueIdentityDescription
P109782.1e-0631.13Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A6J1CG825.6e-2352.59uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
V4T6T38.7e-1655.91Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 ... [more]
A0A2H5QXN28.7e-1655.91Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1[more]
A0A444X3K23.7e-1448.54Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1[more]
A0A2P5FY523.7e-1447.22Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_016... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..40
NoneNo IPR availablePANTHERPTHR34676:SF6SUBFAMILY NOT NAMEDcoord: 60..89
NoneNo IPR availablePANTHERPTHR34676:SF6SUBFAMILY NOT NAMEDcoord: 1..40
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 60..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g14570.1Moc06g14570.1mRNA