Moc05g26030 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g26030
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase catalytic domain-containing protein
Locationchr5: 18506461 .. 18507156 (-)
RNA-Seq ExpressionMoc05g26030
SyntenyMoc05g26030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATGCGTTAAAATTGAAATTTGGTAGAACTTCTATTAGCAATGTTACTCAACTTATCTTCAAGCTTGACACTACTACGATTAGTGAGCTGAAAGAAGCTGGTAATGTCCTGACTGATGAACAGCACGTTCAACTTGATATTCGATCTCTTTCCTATGACGGAGAGCACATGGAGGTGCATCCTACCCATAATGAGGGAATTAAAACTCTTAATGATGTTTTGTGTCATCTTAGACTAGAAGAATATTGTATGGAGGCAACGAGGCCTGACAACGTTGAAGCCTATGTGGCTGGCCCTAATTCCTACGGGAACAAAGGGAACAAGTGTAAATATTAAGAAGTTTTTAAGAGGAAAGGAGATCACAGGATTAAGAAACGCAAGCAAGGTCAAAATGATAAGGGTAAAGGGAAACGTCCCAAGGTTCATCCTAAATACAAGAAAGCAAACATCAGATGCTATAAATGTCACTGAAAGGGTCATTATGCTCGTGAGTGTACTGAATCTAAGAAGGTACAAACTTTCAAAACATTTAAGATTTGTTATTTCACTTCTGAAAGTTGTGTTTCCAGCTTTGTTTTGTTGACTGACTCTCATCCTTTGTGGATTGTAGATTCAGAAGCAATCGACCACATTGCTAAAGATCATGGGGTGTATGTGGAATTTCGTCGAATTTCATCAAGTGCTAGGTGA

mRNA sequence

ATGTGGGATGCGTTAAAATTGAAATTTGGTAGAACTTCTATTAGCAATGTTACTCAACTTATCTTCAAGCTTGACACTACTACGATTAGTGAGCTGAAAGAAGCTGGTAATGTCCTGACTGATGAACAGCACGTTCAACTTGATATTCGATCTCTTTCCTATGACGGAGAGCACATGGAGGTGCATCCTACCCATAATGAGGGAATTAAAACTCTTAATGATGTTTTGTGTCATCTTAGACTAGAAGAATATTGTATGGAGGCAACGAGGCCTGACAACGTTGAAGCCTATGTGGCTGGCCCTAATTCCTACGGGAACAAAGGGAACAAGTATTCAGAAGCAATCGACCACATTGCTAAAGATCATGGGGTGTATGTGGAATTTCGTCGAATTTCATCAAGTGCTAGGTGA

Coding sequence (CDS)

ATGTGGGATGCGTTAAAATTGAAATTTGGTAGAACTTCTATTAGCAATGTTACTCAACTTATCTTCAAGCTTGACACTACTACGATTAGTGAGCTGAAAGAAGCTGGTAATGTCCTGACTGATGAACAGCACGTTCAACTTGATATTCGATCTCTTTCCTATGACGGAGAGCACATGGAGGTGCATCCTACCCATAATGAGGGAATTAAAACTCTTAATGATGTTTTGTGTCATCTTAGACTAGAAGAATATTGTATGGAGGCAACGAGGCCTGACAACGTTGAAGCCTATGTGGCTGGCCCTAATTCCTACGGGAACAAAGGGAACAAGTATTCAGAAGCAATCGACCACATTGCTAAAGATCATGGGGTGTATGTGGAATTTCGTCGAATTTCATCAAGTGCTAGGTGA

Protein sequence

MWDALKLKFGRTSISNVTQLIFKLDTTTISELKEAGNVLTDEQHVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNSYGNKGNKYSEAIDHIAKDHGVYVEFRRISSSAR
Homology
BLAST of Moc05g26030 vs. NCBI nr
Match: XP_031252128.1 (uncharacterized protein LOC116110025 [Pistacia vera])

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 64/152 (42.11%), Postives = 83/152 (54.61%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLDT-----------------TTISELKEAGNVLTDEQ 60
           MW     KFG  SI+ +  L  K DT                   ISEL +AG+VLTDEQ
Sbjct: 479 MWSTFATKFGGMSITKLRSLTIKFDTYKKKPEHNMRVHLRHLSNMISELIDAGHVLTDEQ 538

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 120
            VQ  IRSL  + EHM++H THNEGI  L DV+CHL LEE  + A++  N + Y+AG +S
Sbjct: 539 QVQAVIRSLPQNWEHMKIHLTHNEGIINLEDVICHLELEEDRLNASKA-NTDVYMAGSSS 598

Query: 121 YGNKGNKYSEAIDHIAKDHGVYVEFRRISSSA 136
           + +     S+  DH  KD  V    R IS++A
Sbjct: 599 HDS-----SQQHDHKRKDRSV---CRGISTNA 621

BLAST of Moc05g26030 vs. NCBI nr
Match: MBW0583023.1 (hypothetical protein [Austropuccinia psidii MF-1])

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-16
Identity = 55/127 (43.31%), Postives = 72/127 (56.69%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLD-----------------TTTISELKEAGNVLTDEQ 60
           MW+AL  +FG  S++ + QL  + D                 +  I+ELK+AG+VLTDEQ
Sbjct: 100 MWEALAARFGHISVTRLRQLTIRFDSYKKPHGQTMKQHLRKMSNMINELKDAGHVLTDEQ 159

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 111
            VQ  IRSL    EHM+VH THNE IKT  D + HL LEE  + A +PD  E Y A  +S
Sbjct: 160 QVQAVIRSLPQSWEHMKVHLTHNENIKTFEDAMRHLELEEDRLLAAKPD-AELYHASSSS 219

BLAST of Moc05g26030 vs. NCBI nr
Match: XP_031251290.1 (uncharacterized protein LOC116109196 [Pistacia vera])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLDT-----------------TTISELKEAGNVLTDEQ 60
           MW AL +KFG TSI+ +  L  KLDT                   I+EL++AG+VLTDEQ
Sbjct: 100 MWSALVVKFGGTSITKLRSLTIKLDTYKKQPNYTMRQHLRQMSNMINELRDAGHVLTDEQ 159

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 108
             Q+ I+SL +  EHM++H THN  IKTL DV+ HL LEE  + A    N + Y+   NS
Sbjct: 160 QAQVVIQSLPHGWEHMKIHLTHNHVIKTLQDVVRHLGLEEDRISANNKANTDVYITESNS 219

BLAST of Moc05g26030 vs. NCBI nr
Match: XP_031276066.1 (uncharacterized protein LOC116134512 [Pistacia vera])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 54/127 (42.52%), Postives = 69/127 (54.33%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLDT-----------------TTISELKEAGNVLTDEQ 60
           MW AL  KFG TSI+ +  L  K DT                   IS+L++A +VLT+EQ
Sbjct: 56  MWSALATKFGGTSIAKLQPLTIKFDTYKKKPEHTMRVHVRHLSNMISQLRDASHVLTNEQ 115

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 111
            VQ  IR    + EHM++H THNEGIK L D   HL LEE  +  ++  +   Y+ G NS
Sbjct: 116 QVQAIIRLFPQNWEHMKIHLTHNEGIKNLEDATRHLELEENSLNGSK-TSTNVYMIGSNS 175

BLAST of Moc05g26030 vs. NCBI nr
Match: XP_031258566.1 (uncharacterized protein LOC116116653 [Pistacia vera])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13
Identity = 54/124 (43.55%), Postives = 67/124 (54.03%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLDT-----------------TTISELKEAGNVLTDEQ 60
           MW AL  KFG TSI  +  L  KLDT                   I+EL++A +VLTDEQ
Sbjct: 100 MWSALAAKFGGTSIIKLRSLTIKLDTYKKKPNYTMRQHLRQMSNMINELRDA-SVLTDEQ 159

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 108
             Q+ I+SL Y  EHM++H THN  IKTL DV+ HL LEE  + A    N + Y+   NS
Sbjct: 160 QAQVVIQSLPYGWEHMKIHLTHNHVIKTLQDVVRHLGLEEDHISANNKANTDVYITESNS 219

BLAST of Moc05g26030 vs. ExPASy TrEMBL
Match: A0A2N9ILG6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52821 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 56/144 (38.89%), Postives = 81/144 (56.25%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLDTTTISELKEAGNVLTDEQHVQLDIRSLSYDGEHME 60
           MW ALK KFG T + ++ +++       + ELK  GN LTDEQ +Q+ IRSL    E M+
Sbjct: 98  MWIALKAKFGET-MEHMRKML-----AMVRELKATGNSLTDEQQIQVVIRSLPDSWEQMK 157

Query: 61  VHPTHNEGIKTLNDVLCHLRLE-EYCMEA-------TRPDNVEAYVAGPNSYGNKGNKYS 120
           ++ THNE I+TL D+  HL LE E C+          R    +A+ A   SY     +  
Sbjct: 158 LNMTHNESIQTLEDLSSHLELEAERCVVQGQSSAFFARHGQCQAFKAKRKSYEKAPQRDI 217

Query: 121 EAIDHIAKDHGVYVEFRRISSSAR 137
            A DH+AKD   ++E+RR+ +S+R
Sbjct: 218 GATDHVAKDRVGFIEYRRVPASSR 235

BLAST of Moc05g26030 vs. ExPASy TrEMBL
Match: A0A2N9J7M1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60405 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLDT-----------------TTISELKEAGNVLTDEQ 60
           MW ALK KFG T+++ +  L  K DT                   + ELK AGN LTDEQ
Sbjct: 82  MWIALKAKFGGTTVTQLRALTLKFDTFRMQRCDSMQEHLRKMSAMVRELKAAGNNLTDEQ 141

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 120
            +Q  IRSL    E M+++ THNE I+ L D+  HL L+     A    +      G   
Sbjct: 142 QIQAVIRSLPDSWEQMKLNMTHNESIQMLEDLSRHLELKAERRVAQGQSSAFFARHGQRQ 201

Query: 121 YGNKGNKYSEAIDHIAKDHGVYVEFRRISSSAR 137
                 K + A DH+A+D   +VE+RR+ +  R
Sbjct: 202 AFKAKRKNTGATDHVARDRVGFVEYRRVPAGNR 234

BLAST of Moc05g26030 vs. ExPASy TrEMBL
Match: A0A2U1LF40 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA497560 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 54/156 (34.62%), Postives = 81/156 (51.92%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLDTTT-----------------ISELKEAGNVLTDEQ 60
           +W+A+KL+FG TS + +  L  + D  T                 I+EL   G  LTDE+
Sbjct: 22  VWEAVKLQFGGTSTTRLHSLNLRFDGYTKRHDHSMRQHLIIMSNMIAELNTTGRELTDEE 81

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPN- 120
            VQ  I+SL+     M+++ THN  IKT +DV  HL LEE  + + + D +EAYVA  + 
Sbjct: 82  EVQAVIKSLTKKWNDMKLNLTHNGNIKTFDDVSRHLELEEDRLGSEQND-IEAYVAESSW 141

Query: 121 --SYGNKGNKYSEAIDHIAKDHGVYVEFRRISSSAR 137
              +  K NK      HI +D   +V++RRI   ++
Sbjct: 142 RKKFNFKRNKGKGVTYHITRDRAAFVDYRRIPRGSK 176

BLAST of Moc05g26030 vs. ExPASy TrEMBL
Match: V4M548 (CCHC-type domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002214mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.6e-12
Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQLIFKLD-----------------TTTISELKEAGNVLTDEQ 60
           MW+ALK KFG TS + + +L  KL+                 +  I ELK AG ++++EQ
Sbjct: 55  MWEALKDKFGATSATKLRRLNQKLNDYKKRPNQSMRQHLRIMSNMIRELKNAGQIMSNEQ 114

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 111
            VQ  +RSL    +HM++  THNE +KT  D+  HL LE+  +EA++  N EA  A  NS
Sbjct: 115 QVQAVLRSLPESWDHMKIQMTHNENVKTFEDISRHLELEDERIEASKSFN-EAKFASSNS 174

BLAST of Moc05g26030 vs. ExPASy TrEMBL
Match: A0A1J3IMV5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Noccaea caerulescens OX=107243 GN=MP_TR26717_c6_g1_i1_g.78152 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.6e-12
Identity = 53/138 (38.41%), Postives = 70/138 (50.72%), Query Frame = 0

Query: 1   MWDALKLKFGRTSISNVTQL-----------------IFKLDTTTISELKEAGNVLTDEQ 60
           MW+ALK KFG TS + + +L                   ++ +  I ELK AG  +TDEQ
Sbjct: 100 MWEALKEKFGATSATKLRRLNQRFNDYKKRPNLSMRQHLRIMSNMIRELKNAGQTMTDEQ 159

Query: 61  HVQLDIRSLSYDGEHMEVHPTHNEGIKTLNDVLCHLRLEEYCMEATRPDNVEAYVAGPNS 117
            VQ  +RSL    +HM +   HN  +KT  D+  HL LE+  +EA +P N EA  A  NS
Sbjct: 160 QVQAVLRSLPESWDHMRMQMMHNVNVKTFEDLSRHLELEDERLEAAKPFN-EANYASSNS 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031252128.14.4e-1742.11uncharacterized protein LOC116110025 [Pistacia vera][more]
MBW0583023.13.7e-1643.31hypothetical protein [Austropuccinia psidii MF-1][more]
XP_031251290.11.1e-1543.55uncharacterized protein LOC116109196 [Pistacia vera][more]
XP_031276066.11.9e-1542.52uncharacterized protein LOC116134512 [Pistacia vera][more]
XP_031258566.11.0e-1343.55uncharacterized protein LOC116116653 [Pistacia vera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9ILG61.3e-1438.89Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52821 PE=4 SV=1[more]
A0A2N9J7M11.2e-1235.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60405 PE=4 SV=1[more]
A0A2U1LF403.5e-1234.62Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA497560 PE=4 SV=1[more]
V4M5484.6e-1239.39CCHC-type domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 G... [more]
A0A1J3IMV54.6e-1238.41Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Noccaea caerulesc... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35317OS04G0629600 PROTEINcoord: 28..104
NoneNo IPR availablePANTHERPTHR35317:SF15ZINC FINGER, CCHC-TYPE-RELATEDcoord: 28..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g26030.1Moc05g26030.1mRNA