Moc05g16020 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g16020
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr5: 12066313 .. 12067460 (+)
RNA-Seq Expression	Moc05g16020
Synteny	Moc05g16020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGAGTTCATGACAAGAATGGATGATGTGATAAGAAGCTTGGAGATGCAAGTGGGGCAGATTGCAAATGACCTAAAATCTAGACCCCAAGGTACATTACCTGGACATATAGAAAACCCGAAGCGAGATCGTGAGGGAAAGGATCACTGTAAGGCGGTTATCACGAGAAGCAGACTAAGTTATGATGGACCCTCACTTCCAGACGAAGGAACTGATGTAGTTACACCTGTTCCTGCATCCACCTCCAATCCAGAACAAGAAGAGAAAGCAGAACCCGTAAGTTCAGAAGAAAAAGGTAAGAAGGCGGATAAAGGTAAGTAAATAGTGCCCAGCACTACTCCACAGGTAGGTTATATTAAGATTCCTCTACCTTTCTCCCAAAGGCTAGTTAAAAAGAATCAGGATAGTCATTTTAAGAAGTTCTTTGAGATTCTAAAACAGTTGCATATAAAATATACCTCTCATAAATGCTTTAAAACAAATGCCTAACTACACTAAGTTTTTAAGAGACATCATATCTAGGCGTAAGAAGTTAGGTGAGCCTGAGACGGTAGCTTTGACAAAATGTGGTAGTGATGTTCTAGGGAATCCATTGCCTGTTAAATGTAAGGACCCAGGTAGTTTCACTATTCCTTGCTCAATAGGAGGGAAGAACCTAGGAAGAGCATTGTGTGACTTAGGAGCAAGCATTAATCTTATGCCTCTTTATGTATTTAAAGAGTTAAATATAGGAGAAGCTCGTCCCACTACTGTCACTTTACAACTAGCTGATAGATCCATAAAGAACCGGAAGGAAAAATAGAATATGTGCTTGTTAAAGTTGATAAGTTTATTTTTCCCGCCGATTTCATAATTTTGGACTGTGAGCAGATCTTGAGGTGCCGATCATTCTTGGGAGGCCAATTTTAGCAACTGGAGATACGGTTTTCAATGTTAGGAAAGGAGAGATCACGATGAAGGTCAATGATCAGCAGGTAACCTTCAATGTCCTCGATGCGATGTGTCTCCCGGATGAAGTCGAAGAGTGCTCTACAATAGGGGCAATCATGGAGGAACTCCAGCAAATGATGGTGGAAAACTTCAAAGCAGATTTGGAGGCCGCAGAAAAAGAATCCAAAATTGTGCCTTTTGCCCCAATTTGA

mRNA sequence

ATGATGAAAGAGTTCATGACAAGAATGGATGATGTGATAAGAAGCTTGGAGATGCAAGTGGGGCAGATTGCAAATGACCTAAAATCTAGACCCCAAGGTACATTACCTGGACATATAGAAAACCCGAAGCGAGATCGTGAGGGAAAGGATCACTGTAAGGCGGTTATCACGAGAAGCAGACTAAGTTATGATGGACCCTCACTTCCAGACGAAGGAACTGATGTAGTTACACCTGTTCCTGCATCCACCTCCAATCCAGAACAAGAAGAGAAAGCAGAACCCGTAAGTTCAGAAGAAAAAGGTAAGAAGGCGGATAAAGGAGAGATCACGATGAAGGTCAATGATCAGCAGGTAACCTTCAATGTCCTCGATGCGATGTGTCTCCCGGATGAAGTCGAAGAGTGCTCTACAATAGGGGCAATCATGGAGGAACTCCAGCAAATGATGGTGGAAAACTTCAAAGCAGATTTGGAGGCCGCAGAAAAAGAATCCAAAATTGTGCCTTTTGCCCCAATTTGA

Coding sequence (CDS)

ATGATGAAAGAGTTCATGACAAGAATGGATGATGTGATAAGAAGCTTGGAGATGCAAGTGGGGCAGATTGCAAATGACCTAAAATCTAGACCCCAAGGTACATTACCTGGACATATAGAAAACCCGAAGCGAGATCGTGAGGGAAAGGATCACTGTAAGGCGGTTATCACGAGAAGCAGACTAAGTTATGATGGACCCTCACTTCCAGACGAAGGAACTGATGTAGTTACACCTGTTCCTGCATCCACCTCCAATCCAGAACAAGAAGAGAAAGCAGAACCCGTAAGTTCAGAAGAAAAAGGTAAGAAGGCGGATAAAGGAGAGATCACGATGAAGGTCAATGATCAGCAGGTAACCTTCAATGTCCTCGATGCGATGTGTCTCCCGGATGAAGTCGAAGAGTGCTCTACAATAGGGGCAATCATGGAGGAACTCCAGCAAATGATGGTGGAAAACTTCAAAGCAGATTTGGAGGCCGCAGAAAAAGAATCCAAAATTGTGCCTTTTGCCCCAATTTGA

Protein sequence

MMKEFMTRMDDVIRSLEMQVGQIANDLKSRPQGTLPGHIENPKRDREGKDHCKAVITRSRLSYDGPSLPDEGTDVVTPVPASTSNPEQEEKAEPVSSEEKGKKADKGEITMKVNDQQVTFNVLDAMCLPDEVEECSTIGAIMEELQQMMVENFKADLEAAEKESKIVPFAPI

Homology

[Close]

BLAST of Moc05g16020 vs. NCBI nr
Match: XP_022150857.1 (uncharacterized protein LOC111018901 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 106 KGEITMKVNDQQVTFNVLDAMCLPDEVEECSTIGAIMEELQQMMVENFKADLEAAEKESK 165
           KGEITMKVND+QVTFNVLDAM LPD+VEECSTIGAIMEELQQM+VE+ +ADLE AEKES 
Sbjct: 146 KGEITMKVNDEQVTFNVLDAMRLPDDVEECSTIGAIMEELQQMIVEDLEADLEVAEKEST 205

Query: 166 IV 168
            +
Sbjct: 206 AI 207

[Close]

BLAST of Moc05g16020 vs. NCBI nr
Match: XP_022143639.1 (uncharacterized protein LOC111013500 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-15
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 106 KGEITMKVNDQQVTFNVLDAMCLPDEVEECSTIGAIMEELQQMMVENFKADLEAAEKESK 165
           KG ITMKVND+Q+TFNVLD   LPDEVE+CS IGAIMEELQ+M+VE+ +ADLEAAEKE+ 
Sbjct: 132 KGNITMKVNDEQITFNVLDVRRLPDEVEDCSAIGAIMEELQEMIVEDLEADLEAAEKEAG 191

Query: 166 IV 168
           ++
Sbjct: 192 VI 193

[Close]

BLAST of Moc05g16020 vs. NCBI nr
Match: XP_022150097.1 (uncharacterized protein LOC111018357 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 79/264 (29.92%), Postives = 103/264 (39.02%), Query Frame = 0


Query: 20  VGQIANDLKSRPQGTLPGHIENPKRDREGKDHCKAVITRSRLSYDGPSLPDE-------- 79
           +GQ+ N+LKSR   TLP   E PK  REGK+HCKA+ T+SRL+Y+ P +P E        
Sbjct: 1   MGQLTNELKSRSSDTLPSITEEPK--REGKEHCKAITTQSRLAYEEPKMPGEQASSPSKE 60

Query: 80  ---GTDVVTPVPASTSNPEQEE-------------------------------------- 139
               T+   PV    S P  ++                                      
Sbjct: 61  KETATEPDQPVEIEVSRPMAQQDIISRRKKLGEHETVALTKCSSDALGNPLPIKCKDPGI 120

Query: 140 -------KAEPVS----------SEEKGKKAD---------------------------- 170
                  KA P +           + +GK  D                            
Sbjct: 121 FKELNIGKARPTTVTLQFADRSIRKLEGKIEDVLIKVDKLTFPADFIILDCEVDLDIPII 180

[Close]

BLAST of Moc05g16020 vs. NCBI nr
Match: XP_022158408.1 (uncharacterized protein LOC111024897, partial [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-12
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MMKEFMTRMDDVI-------RSLEMQVGQIANDLKSRPQGTLPGHIENPKRDREGKDHCK 60
           MMKE+M R D VI       R+   Q+G +AN+LK+RPQG+ PGH E P+  REGK+ CK
Sbjct: 437 MMKEYMARTDAVIQSQAASMRNFGTQLGHLANELKNRPQGSFPGHTELPR--REGKEQCK 496

Query: 61  AVITRSRLSYDGPSLPDEGTDVVTP-------VPASTSNPEQE 90
           AV  RS L+YDGP++P   TDV  P       +P + + PE+E
Sbjct: 497 AVTLRSGLTYDGPTMPT--TDVQIPSTKPTVKIPENPTTPEKE 535

[Close]

BLAST of Moc05g16020 vs. NCBI nr
Match: XP_022159235.1 (uncharacterized protein LOC111025653 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-11
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 2   MKEFMTRMDDVIRSLEMQVGQIANDLKSRPQGTLPGHIENPKRDREGKDHCKAVITRSRL 61
           +K++M R D  +R LEMQ+GQ+ N++++RPQG+LP   E P+  R GK+HC ++ TRS L
Sbjct: 428 VKDYMGRNDVTVRKLEMQLGQLVNEVRTRPQGSLPSSTEEPR--RIGKEHCNSIATRSGL 487

Query: 62  SYDGPSLPDEGTDVVTPVPASTSNPEQEEKAEPV 96
            Y+GP +PDE          S+ +P +E+  + V
Sbjct: 488 KYEGPRMPDE----------SSHSPSREKDTQAV 509

[Close]

BLAST of Moc05g16020 vs. ExPASy TrEMBL
Match: A0A6J1DBX0 (uncharacterized protein LOC111018901 OS=Momordica charantia OX=3673 GN=LOC111018901 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.4e-18
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 106 KGEITMKVNDQQVTFNVLDAMCLPDEVEECSTIGAIMEELQQMMVENFKADLEAAEKESK 165
           KGEITMKVND+QVTFNVLDAM LPD+VEECSTIGAIMEELQQM+VE+ +ADLE AEKES 
Sbjct: 146 KGEITMKVNDEQVTFNVLDAMRLPDDVEECSTIGAIMEELQQMIVEDLEADLEVAEKEST 205

Query: 166 IV 168
            +
Sbjct: 206 AI 207

[Close]

BLAST of Moc05g16020 vs. ExPASy TrEMBL
Match: A0A6J1CPX1 (uncharacterized protein LOC111013500 OS=Momordica charantia OX=3673 GN=LOC111013500 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 106 KGEITMKVNDQQVTFNVLDAMCLPDEVEECSTIGAIMEELQQMMVENFKADLEAAEKESK 165
           KG ITMKVND+Q+TFNVLD   LPDEVE+CS IGAIMEELQ+M+VE+ +ADLEAAEKE+ 
Sbjct: 132 KGNITMKVNDEQITFNVLDVRRLPDEVEDCSAIGAIMEELQEMIVEDLEADLEAAEKEAG 191

Query: 166 IV 168
           ++
Sbjct: 192 VI 193

[Close]

BLAST of Moc05g16020 vs. ExPASy TrEMBL
Match: A0A6J1D9S6 (uncharacterized protein LOC111018357 OS=Momordica charantia OX=3673 GN=LOC111018357 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-13
Identity = 79/264 (29.92%), Postives = 103/264 (39.02%), Query Frame = 0


Query: 20  VGQIANDLKSRPQGTLPGHIENPKRDREGKDHCKAVITRSRLSYDGPSLPDE-------- 79
           +GQ+ N+LKSR   TLP   E PK  REGK+HCKA+ T+SRL+Y+ P +P E        
Sbjct: 1   MGQLTNELKSRSSDTLPSITEEPK--REGKEHCKAITTQSRLAYEEPKMPGEQASSPSKE 60

Query: 80  ---GTDVVTPVPASTSNPEQEE-------------------------------------- 139
               T+   PV    S P  ++                                      
Sbjct: 61  KETATEPDQPVEIEVSRPMAQQDIISRRKKLGEHETVALTKCSSDALGNPLPIKCKDPGI 120

Query: 140 -------KAEPVS----------SEEKGKKAD---------------------------- 170
                  KA P +           + +GK  D                            
Sbjct: 121 FKELNIGKARPTTVTLQFADRSIRKLEGKIEDVLIKVDKLTFPADFIILDCEVDLDIPII 180

[Close]

BLAST of Moc05g16020 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MMKEFMTRMDDVI-------RSLEMQVGQIANDLKSRPQGTLPGHIENPKRDREGKDHCK 60
           MMKE+M R D VI       R+   Q+G +AN+LK+RPQG+ PGH E P+  REGK+ CK
Sbjct: 437 MMKEYMARTDAVIQSQAASMRNFGTQLGHLANELKNRPQGSFPGHTELPR--REGKEQCK 496

Query: 61  AVITRSRLSYDGPSLPDEGTDVVTP-------VPASTSNPEQE 90
           AV  RS L+YDGP++P   TDV  P       +P + + PE+E
Sbjct: 497 AVTLRSGLTYDGPTMPT--TDVQIPSTKPTVKIPENPTTPEKE 535

[Close]

BLAST of Moc05g16020 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 2   MKEFMTRMDDVIRSLEMQVGQIANDLKSRPQGTLPGHIENPKRDREGKDHCKAVITRSRL 61
           +K++M R D  +R LEMQ+GQ+ N++++RPQG+LP   E P+  R GK+HC ++ TRS L
Sbjct: 428 VKDYMGRNDVTVRKLEMQLGQLVNEVRTRPQGSLPSSTEEPR--RIGKEHCNSIATRSGL 487

Query: 62  SYDGPSLPDEGTDVVTPVPASTSNPEQEEKAEPV 96
            Y+GP +PDE          S+ +P +E+  + V
Sbjct: 488 KYEGPRMPDE----------SSHSPSREKDTQAV 509

The following BLAST results are available for this feature:

BLAST of Moc05g16020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150857.1	1.1e-17	82.26	uncharacterized protein LOC111018901 [Momordica charantia]	[more]
XP_022143639.1	2.3e-15	72.58	uncharacterized protein LOC111013500 [Momordica charantia]	[more]
XP_022150097.1	1.1e-12	29.92	uncharacterized protein LOC111018357 [Momordica charantia]	[more]
XP_022158408.1	3.2e-12	47.57	uncharacterized protein LOC111024897, partial [Momordica charantia]	[more]
XP_022159235.1	7.8e-11	41.49	uncharacterized protein LOC111025653 [Momordica charantia]	[more]

BLAST of Moc05g16020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g16020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBX0	5.4e-18	82.26	uncharacterized protein LOC111018901 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CPX1	1.1e-15	72.58	uncharacterized protein LOC111013500 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D9S6	5.3e-13	29.92	uncharacterized protein LOC111018357 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DW02	1.5e-12	47.57	uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DY39	3.8e-11	41.49	uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

Pages

BLAST of Moc05g16020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g16020.1	Moc05g16020.1	mRNA