Moc05g15610 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g15610
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr5: 11784816 .. 11789011 (-)
RNA-Seq ExpressionMoc05g15610
SyntenyMoc05g15610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAAGTCGACATGAACCTTGGAGGGAATCAACAGTGCTTCGATGAAGCTTGTCATCTAGGAGAAAGCCCGAACAAGTCAATCAGCCACTGTGGAGGAACTCACCCGAGCCCTGGTCACCATATGGAGTCGCCCGCTCCTAATAGGGTAGAACCAGCCGAGGAGGTGGAGTCAATCCCCTTGACATCTGAGGATCGACAAGTCAACATCGGAACCAGGTTGGGGGCTGAGGAAAGAGCGAGTCTCATCAACTTCCTCAGAAGCAACGCTGACGTGTTCCCGTGGTCACACGAGGATATGTCGGGAATCGATTAGGAAGTTATGGTGCACCGACTCAATATCGACTGGAACTGTAAACCAGCGAGGCAGAAACATCGTACCTTCAACCAAGATAGGAATGAGGTTGTGGCCGAGCAGGTAGATGAGTTGCTGAAAGCAAGGCTTGAAGTACATTGCCCTAAGTGGATATTCATCGTAGTGCTAGTGAAGAAGGCTAAGTGGAAAATGTGTATCGATTTCACAGATTTGAACAAGACTTGCCCGAATGATTCTTTTCCTTTGCCTCGGATAGATCATCTTGTAGATGCCACACCTGGACATGAGAGATTAAGTTTCAGGATGCCTACTATGGGTACAACTAAATAAAAATGCATCTGCCTGACCTGGAGAAGACTTTTTTTGTCTGTATTGCTACATAGTGATGTCATTTTGGTTTAAAAACGCAGGTGCTACGTACCAAAGGAAGGTAAATCAGATGTTTGCACCATTGATTGGCAAGAATATGGAAGTTTACATGGACGATATGTTGGTGAAGAGTCGGTGGGGTCATCAACATGAAACGGACCTACCAAAAGCATTCGAGATCTTAAGGAAGTACAAGATGAAATTGAATCCGAGCAAGTATACATTCGGAGTGAATTCAAGGAAATTTCTTGCATTCTTGGTGCATCAGCGAGGAATCGAAGCAAACCCTGATAAAATTCGAGCTGTGTTAGAGATGGACCCGCCTAAGAATTTAAAGCAACTACAGGGTCAATGGAAGAATAATGTCACTCAACAGATTCGTAAGTCGCTTAACTCACAAGTGTCTCCCCTTCTTTAAAATTTTAAGGAAAAAGGGACAATTTGAATGGACGGAGAAGTTGGCAATGGCATTGATCACCTCGGCTCGGAGGCTACGTTCGTACTTCTGAGCACATAAGATAACCGTCTTTACCAACTTCATTATGCTACAGATCTTACAAAGACATGAGACTTCAGGACGTCTGGTAAAGTGGGCAGTAGAACTCAACGAATATGACATCCACTACAAATCAAGGACAACAATGAAGGGACAAGCTGTGGTAGATTTATAGTGGAGCTAACACCAGTAGAGCTCCAAATGTAACGGCCCAGAACTTCCCACACACTTCTAGGTCACGTTAACTACCCACCTGTCTAAACATAACACCACACGAGATGACAACTCCCTGTGAAATAATTATACAAAATAAAGCTTCAACTCTCATCAATTTACCAATGAATCAACTCTATAGAATATCAATCAAACATAATCCGTGGACAACCTCATGAGGCAACTTTATTATTCCAACTAGGCAAACTCAATGAATGCTATAAAACTAAAATAAACACCTGTTCCGAAATAAAGTAGACAACGAGTGGGAACCTCCCAATTATTCAAATAAGAACAAATAGTTTAATGACCAAACCATAAAGTCTTAACCATCTAAACCTAAGCTAAGCAAAAGTGACTATGCAGCCAATGGTCCTCGCTCGTCATGTCTCCTCCGTCTCATCACCATGGTCGCCAACGAATCCTTCGCCTGAAACAATAATTGTAGGGGGGGGGTGAGTATATGAAATGTACTCCGTAAGTAGCCCTCACCAACAATACACAAATATCATGCTCACACAAAATCATGAAACATTCATAGTCATGCTCTTCATCACATTATGCAATCAACCCTAGACACACTCTATAAGATTCGACGACAACCACAACCATGAACAAATTAATTACCAACCTCAAGTCTCCCTAACATCTCAAGCACCTCTACGCTTATCACAGCTATCCTAGCCTTCTACAGCTAACTCTTTCGAGTAGAGTCGGCCCCTGACCATTTTTACCCAGAGCCCCGACACTACTGCATCGGCCCTCGACCATTTTTACCCAAGACCTCGATGACTTCACCATCTATCGGCCCTTGACCATTTTTACCCAAGGCCCCAATAGTTTTCCTTCCAAAAGACTCCTCGCATCGACCCTCGACCATTTTTACCCGAGGCCTCGATACTCAATTAGTGACGTATCAGCCCCCGACCATTTATACCTGAGGCCCTGACACTCACCCATTCACTTTCCCCAAGAATCCAACGTTCCTTATCATAACCCACTCCACATCAACCCCTAGCCTGCGAACAGGGTCCGAAAATATGCTTCTCTTACACCCACATCTCATAAGAAAATAATACGACTCAGACCTGCATGCTCGCATCATAAAGAAACGTTTATATATGCTCAACCAGCACGCTCACATCATAAATGAACATTTATATAAACTATACAAGCACGCCCACATCATAAGAAAGCATAATCACAATATTTCTATTTTAACGTGCATCCTTTGTAAACATACATTAGTCCTGCTAAGATTCTATCCCGTGACGTTCAAGCCACGTACCATAAGGTCTCCCAGTAACGAAATCATTAGTCCTGTCTACCACCTCAGACAACTCACAACAAACAAAGCAACCAGTTTGTCCTATCACTTCAGATAAATCACAACTAATCTCTTCAGGGTATCGACAAGTCATTTACACCTCTATTCGCAACACCATTTTTAATATGCTTTTCATTCATACAAGGAGAGAAATAAAATTCACAGTTCTCAAACTAGAAAGTACCTGTCTCCTAACTCAACAATTATCATGTCCCAGTAATCATAGAGCTGGCACATACATCTAGATTCAGAACATGCATTCTATCACCCAACATGACCACTTCCAACCATTTTTAATCTGAAACCACCAACTACATCCAACGATCATGACTCAACACATTTACATAATTTATAGGAACACAGCAAGATGCAAAGCCAACCGTATCAGCAGAATTTCTCCAACCATGACCCACATCTATAAATATAAATGACACATGATTCATATTAGAATGTAGCAACAAATCATTCCAATAACACAGCACAACGCACACACCCACCCCTGGTACTACTTACACAAGGTCCCAAACTACTATTAAGCTCGTCGAAGGGTTCCTAAATCCAAAAGCATCCAAACTTGATTAGAGTTCATACTAGAAACACTTAAGTTGGATCGAAACTAAGCTTAGGTGATTCGTTACCTAATAACTCTCCCTAAAACCTCTTGGGTTAGGAGTGGGTCGATGCCGAGGATGTTCAGGTTCCCAAAATCGAGTTCCAAAGGCCAAAGGCTTGCTGGTCCGACGCTGAAAAGTGATGGATAACGCTGATTTGGGTCCAATTTGAGGCTGGTCAGCGCCGAACCAATGCCGAATAGAGTGAGTATCACAAATCGACTTCGTACACGGGTGGGTATCACGTATCAGGCTTCGTTTGGGTGTGGGTAATCGCCGAACAACACAAAACGTTGTTGATGGCACTTTACAGCAGGGAAAAAAGCCCCAAAAAGACTCTAAAGCCACTGGATGTTGAAACAATGATGCAACTCAACACCAAACGTTGCCGGGAGGAAGGAGACGCCGCAGAAATGAGCTCGAGGTCACCGGGCTCGAACTAAACGTATGCTGGCCGTTGGTTGCAGCTGGAGGACGTCGCCGAACTGCTCTGTTCATCGAGAATAATCGTGGTAGCAGAGTGTTGAGTTGCCTGTTGCTGTCTGTGCTGCAGGACGCCGGAACGACGCCGAGAACCAGTCAAACCTGGGCTGGGAACAAGGAGCTGCCATCGGATATGGTTGTGCCGCCGGACGTCCATCGATTACGAGTTAAGAAACATAGAGCCACTGTTTGTAGCACGACTGTGAACCACCGCCGTTCGCAACTGGGCTCGGCCAGCTGCCGCCACTGTAAATCCCATTGGAGCCCGCACCTAGTACCATCGCAAACGAACACCAGCGTTCGTGGAGGACAGTTGCCGCTGGTGGTTGCTCGGATTGTTGGAGAAAACGCCACCGCCGCCGTCGAAGAGAGCTGCTGA

mRNA sequence

ATGAAGCAAGTCGACATGAACCTTGGAGGGAATCAACAGTGCTTCGATGAAGCTTGTCATCTAGGAGAAAGCCCGAACAAGTCAATCAGCCACTGTGGAGGAACTCACCCGAGCCCTGGTCACCATATGGAGTCGCCCGCTCCTAATAGGGTAGAACCAGCCGAGGAGGTGGAGTCAATCCCCTTGACATCTGAGGATCGACAAGTCAACATCGGAACCAGGAGTGGGTCGATGCCGAGGATGTTCAGGTTCCCAAAATCGAGTTCCAAAGGCCAAAGGCTTGCTGGAAGGAGACGCCGCAGAAATGAGCTCGAGGTCACCGGGCTCGAACTAAACGTATGCTGGCCGTTGGTTGCAGCTGGAGGACGTCGCCGAACTGCTCTGTTCATCGAGAATAATCGTGGTAGCAGAGTGTTGAGTTGCCTGTTGCTGTCTGTGCTGCAGGACGCCGGAACGACGCCGAGAACCAGTCAAACCTGGGCTGGGAACAAGGAGCTGCCATCGGATATGGTTGTGCCGCCGGACGTCCATCGATTACGAGTTAAGAAACATAGAGCCACTGTTTGTAGCACGACTGTGAACCACCGCCGTTCGCAACTGGGCTCGGCCAGCTGCCGCCACTGTAAATCCCATTGGAGCCCGCACCTAGTACCATCGCAAACGAACACCAGCGTTCGTGGAGGACAGTTGCCGCTGGTGGTTGCTCGGATTGTTGGAGAAAACGCCACCGCCGCCGTCGAAGAGAGCTGCTGA

Coding sequence (CDS)

ATGAAGCAAGTCGACATGAACCTTGGAGGGAATCAACAGTGCTTCGATGAAGCTTGTCATCTAGGAGAAAGCCCGAACAAGTCAATCAGCCACTGTGGAGGAACTCACCCGAGCCCTGGTCACCATATGGAGTCGCCCGCTCCTAATAGGGTAGAACCAGCCGAGGAGGTGGAGTCAATCCCCTTGACATCTGAGGATCGACAAGTCAACATCGGAACCAGGAGTGGGTCGATGCCGAGGATGTTCAGGTTCCCAAAATCGAGTTCCAAAGGCCAAAGGCTTGCTGGAAGGAGACGCCGCAGAAATGAGCTCGAGGTCACCGGGCTCGAACTAAACGTATGCTGGCCGTTGGTTGCAGCTGGAGGACGTCGCCGAACTGCTCTGTTCATCGAGAATAATCGTGGTAGCAGAGTGTTGAGTTGCCTGTTGCTGTCTGTGCTGCAGGACGCCGGAACGACGCCGAGAACCAGTCAAACCTGGGCTGGGAACAAGGAGCTGCCATCGGATATGGTTGTGCCGCCGGACGTCCATCGATTACGAGTTAAGAAACATAGAGCCACTGTTTGTAGCACGACTGTGAACCACCGCCGTTCGCAACTGGGCTCGGCCAGCTGCCGCCACTGTAAATCCCATTGGAGCCCGCACCTAGTACCATCGCAAACGAACACCAGCGTTCGTGGAGGACAGTTGCCGCTGGTGGTTGCTCGGATTGTTGGAGAAAACGCCACCGCCGCCGTCGAAGAGAGCTGCTGA

Protein sequence

MKQVDMNLGGNQQCFDEACHLGESPNKSISHCGGTHPSPGHHMESPAPNRVEPAEEVESIPLTSEDRQVNIGTRSGSMPRMFRFPKSSSKGQRLAGRRRRRNELEVTGLELNVCWPLVAAGGRRRTALFIENNRGSRVLSCLLLSVLQDAGTTPRTSQTWAGNKELPSDMVVPPDVHRLRVKKHRATVCSTTVNHRRSQLGSASCRHCKSHWSPHLVPSQTNTSVRGGQLPLVVARIVGENATAAVEESC
Homology
[Close]
BLAST of Moc05g15610 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-05
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 27  KSISHCGGTHPSPGHHMESPAPNRVEPAEEVESIPLTSEDRQVNIGTRSGSMPR 81
           K+    G   PSPGH + S   +R EPAEEVES+PLT+EDR+VNIGT+ GS  R
Sbjct: 81  KATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLGSEER 134

[Close]
BLAST of Moc05g15610 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 27  KSISHCGGTHPSPGHHMESPAPNRVEPAEEVESIPLTSEDRQVNIGTRSGSMPR 81
           K+    G   PSPGH + S   +R EPAEEVES+PLT+EDR+VNIGT+ GS  R
Sbjct: 81  KATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLGSEER 134

The following BLAST results are available for this feature:
BLAST of Moc05g15610 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156571.11.4e-0557.41uncharacterized protein LOC111023448 [Momordica charantia][more]
BLAST of Moc05g15610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g15610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVC66.9e-0657.41Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1[more]
BLAST of Moc05g15610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g15610.1Moc05g15610.1mRNA