Moc05g15580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g15580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr5: 11769718 .. 11770188 (+)
RNA-Seq Expression	Moc05g15580
Synteny	Moc05g15580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGAGTTTCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTTGCAGAGTCAAACGGGGCTGTTATAGACGAGCAGAGTCAGGTCAGCTTTATTCTGGAATCTCTTCTGAAAAGTTTCCTGTCATTCCGCAGTAATGCAGTTATGAAAAAGTTGGAATACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTATCAGTCTCTTATAAAAAGTAAGAGACAAGAAGGGGACACAAATGTTGCCACCTCAAAGAGGTTCCACCCAGGTTCGTCCTCTGGAACCAAGTATGCACCCTCTTCTTTTGGAAGTAAGACTTTCAAGAAGAAGAAGGCTACTGGTAAGGGGTCTAAACCTGACTCCGCTGCTGCCGCAGCCAAGAAAGGCAAGGCGAAGGTGAAGGGATCGAATCCCAAGCGGAAGCGTTTTATCGCTTGTGATTCAATTTGGTTTTAG

mRNA sequence

ATGAAGGAGAGTTTCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTTGCAGAGTCAAACGGGGCTGTTATAGACGAGCAGAGTCAGGTCAGCTTTATTCTGGAATCTCTTCTGAAAAGTTTCCTGTCATTCCGCAGTAATGCAGTTATGAAAAAGTTGGAATACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTATCAGTCTCTTATAAAAAGTAAGAGACAAGAAGGGGACACAAATGTTGCCACCTCAAAGAGGTTCCACCCAGGTTCGTCCTCTGGAACCAAGTATGCACCCTCTTCTTTTGGAAGTAAGACTTTCAAGAAGAAGAAGGCTACTGGTAAGGGGTCTAAACCTGACTCCGCTGCTGCCGCAGCCAAGAAAGGCAAGGCGAAGGTGAAGGGATCGAATCCCAAGCGGAAGCGTTTTATCGCTTGTGATTCAATTTGGTTTTAG

Coding sequence (CDS)

ATGAAGGAGAGTTTCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTTGCAGAGTCAAACGGGGCTGTTATAGACGAGCAGAGTCAGGTCAGCTTTATTCTGGAATCTCTTCTGAAAAGTTTCCTGTCATTCCGCAGTAATGCAGTTATGAAAAAGTTGGAATACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTATCAGTCTCTTATAAAAAGTAAGAGACAAGAAGGGGACACAAATGTTGCCACCTCAAAGAGGTTCCACCCAGGTTCGTCCTCTGGAACCAAGTATGCACCCTCTTCTTTTGGAAGTAAGACTTTCAAGAAGAAGAAGGCTACTGGTAAGGGGTCTAAACCTGACTCCGCTGCTGCCGCAGCCAAGAAAGGCAAGGCGAAGGTGAAGGGATCGAATCCCAAGCGGAAGCGTTTTATCGCTTGTGATTCAATTTGGTTTTAG

Protein sequence

MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYTLTTLLNELQTYQSLIKSKRQEGDTNVATSKRFHPGSSSGTKYAPSSFGSKTFKKKKATGKGSKPDSAAAAAKKGKAKVKGSNPKRKRFIACDSIWF

Homology

[Close]

BLAST of Moc05g15580 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 96/144 (66.67%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKGSNP 144
           +G+K + AAA   K     KG +P
Sbjct: 242 QGNKANLAAAKTTKKAKAAKGISP 264

[Close]

BLAST of Moc05g15580 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 242 QGNKANLAAAKTTKKAKAAKG 261

[Close]

BLAST of Moc05g15580 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 121 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 180

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 181 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 240

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 241 QGNKANLAAAKTTKKAKAAKG 260

[Close]

BLAST of Moc05g15580 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 242 QGNKANLAAAKTTKKTKAAKG 261

[Close]

BLAST of Moc05g15580 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 242 QGNKANLAAAKTTKKAKAAKG 261

[Close]

BLAST of Moc05g15580 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.2e-36
Identity = 96/144 (66.67%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKGSNP 144
           +G+K + AAA   K     KG +P
Sbjct: 242 QGNKANLAAAKTTKKAKAAKGISP 264

[Close]

BLAST of Moc05g15580 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 242 QGNKANLAAAKTTKKAKAAKG 261

[Close]

BLAST of Moc05g15580 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 242 QGNKANLAAAKTTKKTKAAKG 261

[Close]

BLAST of Moc05g15580 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 239 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 298

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 299 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 358

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 359 QGNKANLAAAKTTKKAKAAKG 378

[Close]

BLAST of Moc05g15580 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MKESFSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESLLKSFLSFRSNAVMKKLEYT 60
           M E  SVREHVLN+MVHFNVAE NGAVIDE SQVSFILESL +SFL FRSNAVM K+ YT
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LTTLLNELQTYQSLIKSKRQEGDTNVATS-KRFHPGSSSGTKYAPSSFGSKTFKKKKATG 120
           LTTLLNELQT++SL+K K Q+G+ NVATS ++FH GS+SGTK  PSS G+K +KKKK  G
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-G 241

Query: 121 KGSKPDSAAAAAKKGKAKVKG 141
           +G+K + AAA   K     KG
Sbjct: 242 QGNKANLAAAKTTKKAKAAKG 261

The following BLAST results are available for this feature:

BLAST of Moc05g15580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061339.1	1.1e-35	66.67	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	4.1e-35	67.38	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	4.1e-35	67.38	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	4.1e-35	67.38	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	4.1e-35	67.38	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc05g15580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g15580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6N0	5.2e-36	66.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]
A0A5A7SMH8	2.0e-35	67.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	2.0e-35	67.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	2.0e-35	67.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	2.0e-35	67.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]

BLAST of Moc05g15580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..143
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..128
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g15580.1	Moc05g15580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding