Moc05g13830 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13830
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr5: 10607944 .. 10610747 (-)
RNA-Seq Expression	Moc05g13830
Synteny	Moc05g13830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCTTTATGAGTCCAGTGAAGATTGACATGGAGAAATTTGACGGAAGGATCAACTTTGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCTGAAAAGCTAAGCGTGTTGGGTTTTATGTCCTGAAACTCATAGTTTGAAAATGTCAGATATACTTTTATCTTTCAATAAAGTTGTTATTGAAGGTTTCAATAAGTAGTTATTGATCCAATAAAATGTTCTTACTAGATCTAAATCCAATAAAATAAAGGATCCTAGACTGTTACCTGAGACTCAAACTCTATGTAAGATCCATAAATATGGATCAAGTTTGAGTTAACAGTCTAAATGGTCTATAGTATAGGAATAAGGTTGGGCGCCTTATTCTGGGGACACTATGGATGCGGTCCACTTTGTAGCTAGTACAAATGATGTGATCCTAATTCGTTCATGTGAAGACATGCGAGTGGGGGTGTCCCGTGCAAAGAGTTTGCATAAGACCGGACCATGAGATAGTCACTTTTACTTTATAACACCGTTTACTATTTGAAACTGACTATCTCGACTTTGATGGCCTAGGTAACTCGATCTTAATCCTGAGCTAATTATGAACTTCTGTTTACTCAGGATTACCCTTAGATCTGCATGGGTGAGAGCAGCTCAACAGCGCTGGCTCAATAAGCCTCCCATTTCAGGGGTAAGGCCCGGTAGATAGCTAGGGAGATAGGGTGCAAGAAGGAATTCACTTCTACCCAATTTTAGGATAGTAGAAAGGTTGTTCTCTTAAGGGCTGAATCCAGGTCTTGAACAATAGGCGCCACCCTCATCAAAAGGTTTGAGAGGATTTTTGATTTTATAGTTGGACTACAAATCATTGTTCATTAGAGGATCAGTGGGACTTAAGGAACAAGAGGTAGCGGTATTTTGACCTAGCTGTAATTACGAACAACTTGTGAAGGGTCGACTTACCGATCATGGTTATATCAAATGGACATAATATATCTACAGTGAAGAGAGTGCAGCTATGGGCTTTAGTGGAGTGACCCGATAGTTAACGAATGTTGGTTAACTAGGTTAAAGAGTTTAACCGGTTAATCTCGGATCGTTGGAGCTCATAATCTGTAGGTCCATAAGATCCTCTAGCTAGCTCATATAGGAATAAACTTGGAATAATTCGAATCGTACGAATTAGGTTAATCATATGAGATATGATTAAGTAATTGATATATGATATCAATTTGAGAAATTTGGACAAAATATTTAAATATGATTTAAATATTAAAATTATGAATGTGGATTCATAATCGGAGACATGGATTTCATCAAACATCGGATTTTGGAAAAAGTCAAATAGTTGACTTTGACCAGAGAAAGTCAAAGGTTGACTAAAGTAGATTAAAATAATGTTTTTAACCAAGTTGGTGGAAAATTCCACTAACTTGTTGAGTGGAACATTTAAATAATCTCAAAAATCCACTTTTTGACACTTAGCCATGCATGCATAAGTGGAATGTATGTTATAAACTTTTGGTGAATTTAGACATGCATTTTGACACTTAGCCATGCCATGCATGAGTGGAATGTGTGTTGTAAGCTTTTGGTGAACTTAGACATGCATTTTGACACTTAGTCATGCCATGCATAAGTGGAATATGTGTTGTAAGCTTTTGGTGAACTTTGACATGCAAGAGTTGCATGTAATTTGCTTATTTAAGAAGGCCTTTGTTCAAAAATTAAAGGGCTTGGAACCTTTGACTTTTTTTTCCAAAAAAAAAGCTTACATAACTCTTTTTAGCTCCACTTTTCTCTAAATTTTTCCTTCTCTAAAAAGAGTCCCACCACTCTATTCCAAGCCTTGAGAATAGCTAGGAAGATCTCTTGGTTGTTCTTCATTGGAGCTATTTGAAGATTTTTGAAAAGCTACAAAGGTTTGTATTTTTCTCTACTTATCTCTAAGCATCATAATGTATGATCATGCATGTTTAATCTTAGGTTGTATTATGCATCTAGATTGTTATTTCGATTCTTGCTCACTTTCGCTGCGCATGTATGTATATTATCCATCAAAGCGGTGATGATGGTCTAATGGAGTCCAGTGCTGGTTCCAGCAAAGGTTCTAAGAAGTCTAGCATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGAGCTGCAAGCGCAATACGAACATGTTTGAATAAGAATATTCATGCGAATGTGCATGGAATTCGACAGCTAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTTCACACGCTGCGAATAGAGGAAGGTACGAAAGTTTCAGATCATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGAGGTGATCGAAGTGAAGATAGATGACGGAGATAAAGCTCTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAACCGATCTTGATGTATGAGAATGATACTTTGAATTTTACTGAGGTTACTAGTAAACTATTGTCAGAGGAAAGAAGGCCGAATAGTGAAGGGCGTACTTCACATGAAGATTCAGCACTGGTAGCTAGCAATTGGAAGAAGAAGAATGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAAAGCCAGTTCGTCAAAGGGCTCTAGGCGGGATGCTGACAGTGTTTCTCTCATCAGGGGAGACGATGATCAGTTCCTTTGA

mRNA sequence

ATGTCATTCTTTATGAGTCCAGTGAAGATTGACATGGAGAAATTTGACGGAAGGATCAACTTTGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCTGAAAAGCTAAGCGTGATTACCCTTAGATCTGCATGGGTGAGAGCAGCTCAACAGCGCTGGCTCAATAAGCCTCCCATTTCAGGGATTGTTATTTCGATTCTTGCTCACTTTCGCTGCGCATGTATGTATATTATCCATCAAAGCGGTGATGATGGTCTAATGGAGTCCAGTGCTGGTTCCAGCAAAGCTAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTTCACACGCTGCGAATAGAGGAAGGTACGAAAGTTTCAGATCATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGAGGTGATCGAAGTGAAGATAGATGACGGAGATAAAGCTCTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAACCGATCTTGATGTATGAGAATGATACTTTGAATTTTACTGAGGTTACTAGTAAACTATTGTCAGAGGAAAGAAGGCCGAATAGTGAAGGGCGTACTTCACATGAAGATTCAGCACTGGTAGCTAGCAATTGGAAGAAGAAGAATGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAAAGCCAGTTCGTCAAAGGGCTCTAGGCGGGATGCTGACAGTGTTTCTCTCATCAGGGGAGACGATGATCAGTTCCTTTGA

Coding sequence (CDS)

ATGTCATTCTTTATGAGTCCAGTGAAGATTGACATGGAGAAATTTGACGGAAGGATCAACTTTGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCTGAAAAGCTAAGCGTGATTACCCTTAGATCTGCATGGGTGAGAGCAGCTCAACAGCGCTGGCTCAATAAGCCTCCCATTTCAGGGATTGTTATTTCGATTCTTGCTCACTTTCGCTGCGCATGTATGTATATTATCCATCAAAGCGGTGATGATGGTCTAATGGAGTCCAGTGCTGGTTCCAGCAAAGCTAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTTCACACGCTGCGAATAGAGGAAGGTACGAAAGTTTCAGATCATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGAGGTGATCGAAGTGAAGATAGATGACGGAGATAAAGCTCTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAACCGATCTTGATGTATGAGAATGATACTTTGAATTTTACTGAGGTTACTAGTAAACTATTGTCAGAGGAAAGAAGGCCGAATAGTGAAGGGCGTACTTCACATGAAGATTCAGCACTGGTAGCTAGCAATTGGAAGAAGAAGAATGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAAAGCCAGTTCGTCAAAGGGCTCTAGGCGGGATGCTGACAGTGTTTCTCTCATCAGGGGAGACGATGATCAGTTCCTTTGA

Protein sequence

MSFFMSPVKIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSVITLRSAWVRAAQQRWLNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEALYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLILSLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDSVQKKACCWGCGQSGHMKKDCPNKASSSKGSRRDADSVSLIRGDDDQFL

Homology

[Close]

BLAST of Moc05g13830 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 360.9 bits (925), Expect = 1.0e-95
Identity = 196/267 (73.41%), Postives = 207/267 (77.53%), Query Frame = 0


Query: 1   MSFFMSPVKIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSVI--TL 60
           MSFFMSPVKID+EKFDG INFGLWQVQVKDVLIQS LHKALKGRPSEGASEKLS     +
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  RSAWVRAAQQRWLNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWE 120
            S+       R   K   S +               I  S    ++ +    S AKELWE
Sbjct: 355 ESS---GGSSRGSKK---SSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWE 414

Query: 121 KLEALYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKAL 180
           KLEALYQAKGISNRLYLKEQFHTL++EEG K+SDHLSNLNSIIFELE IEVKIDD DKAL
Sbjct: 415 KLEALYQAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKAL 474

Query: 181 RLILSLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKK 240
           RLILSLP SYEHMKPILMY  DTLNF EVTSKLLSEERR  SEGRTSHEDSALV SNWKK
Sbjct: 475 RLILSLPXSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKK 534

Query: 241 KNDSVQKKACCWGCGQSGHMKKDCPNK 266
           K DSVQKKACCWGCGQSGHMKKDCPN+
Sbjct: 535 KKDSVQKKACCWGCGQSGHMKKDCPNR 555

[Close]

BLAST of Moc05g13830 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 265.0 bits (676), Expect = 7.6e-67
Identity = 148/283 (52.30%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 6   SPVKIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSVITLRSAWVRA 65
           SP++ D+EK+DGRINFGLWQVQVKDVLIQSGLHKAL+G+P+  +S+        S   + 
Sbjct: 5   SPMRFDVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKD------SSGTSKD 64

Query: 66  AQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEAL 125
             + W  L+    S I + +  +                ++ +  G S AK+LWEKLE L
Sbjct: 65  DDEEWEDLDLRAASAIRLCLAKN----------------VLANVHGISTAKDLWEKLEQL 124

Query: 126 YQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLILS 185
           YQ KGI NRLYLKEQFHTLR++  TK+SDHLS LN+I+ ELE I VK++D DKALRLILS
Sbjct: 125 YQGKGIPNRLYLKEQFHTLRMDGDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILS 184

Query: 186 LPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDSV 245
           L  SYEHMKPILMY  +TL + +VT KLLSEE+R  S G TS E + L+  N KKK+   
Sbjct: 185 LTSSYEHMKPILMYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP-- 244

Query: 246 QKKACCWGCGQSGHMKKDCPNKASSSKGSRRDADSVSLIRGDD 287
           QK   CW CGQSGH+K++CP  A S+  S + A++V+++ GDD
Sbjct: 245 QKIPVCWKCGQSGHVKRNCPGGADSASSS-KTANNVAVVDGDD 262

[Close]

BLAST of Moc05g13830 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 263.5 bits (672), Expect = 2.2e-66
Identity = 148/283 (52.30%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 6   SPVKIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSVITLRSAWVRA 65
           SP++  +EK+DGRINFGLWQVQVKDVLIQSGLHKAL+G+P+  +S+        S   + 
Sbjct: 5   SPMRFVVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKD------SSGTSKD 64

Query: 66  AQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEAL 125
             + W  L+    S I + +  +                ++ +  G S AK+LWEKLE L
Sbjct: 65  DDEEWEDLDLRAASAIRLCLAKN----------------VLANVHGISTAKDLWEKLEQL 124

Query: 126 YQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLILS 185
           YQ KGISNRLYLKEQFHTLR++  TK+SDHLS LN+I+ ELE I VK++D DKALRLILS
Sbjct: 125 YQGKGISNRLYLKEQFHTLRMDGDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILS 184

Query: 186 LPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDSV 245
           L  SYEHMKPILMY  +TL + +VT KLLSEE+R  S G TS E + L+  N KKK+   
Sbjct: 185 LTSSYEHMKPILMYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP-- 244

Query: 246 QKKACCWGCGQSGHMKKDCPNKASSSKGSRRDADSVSLIRGDD 287
           QK   CW CGQSGH+K++CP  A S+  S + A++V+++ GDD
Sbjct: 245 QKIPVCWKCGQSGHVKRNCPGGADSASNS-KTANNVAVVDGDD 262

[Close]

BLAST of Moc05g13830 vs. NCBI nr
Match: KAE8717380.1 (hypothetical protein F3Y22_tig00110050pilonHSYRG00143 [Hibiscus syriacus])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-65
Identity = 148/289 (51.21%), Postives = 192/289 (66.44%), Query Frame = 0


Query: 9   KIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS-EKLSVITLRSAWVR 68
           + D+EKFDGRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG   +K S  +      +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 63

Query: 69  AAQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEA 128
            +++ W  L+    S I + +  +                ++ + A  S  KELWEKLE 
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKN----------------VLANVARWSSTKELWEKLEE 123

Query: 129 LYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLIL 188
           +YQAK +SNRLYLKE+FH L++EEGTK+SDHLS LN I+ ELE I V+IDD DKALRLI 
Sbjct: 124 MYQAKSLSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIW 183

Query: 189 SLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDS 248
           SLP SYEHM+ +LMY  + +NF+EVTSKL+SEERR  +    S E  AL     +KK   
Sbjct: 184 SLPSSYEHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKG 243

Query: 249 VQKKACCWGCGQSGHMKKDCPN-KASSSKGSRRDADSVSLIRGDDDQFL 291
            +KK  CWGCGQ GH+KKDC N  A+S+ GS+ DA +V +   +DD+F+
Sbjct: 244 SKKKIICWGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDEFV 276

[Close]

BLAST of Moc05g13830 vs. NCBI nr
Match: KAE8682180.1 (Transcription initiation factor IIA subunit 2 [Hibiscus syriacus])

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-64
Identity = 147/289 (50.87%), Postives = 191/289 (66.09%), Query Frame = 0


Query: 9   KIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS-EKLSVITLRSAWVR 68
           + D+EKFDGRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG   +K S  +      +
Sbjct: 90  RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 149

Query: 69  AAQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEA 128
            +++ W  L+    S I + +  +                ++ + A  S  KELWEKLE 
Sbjct: 150 MSEEEWEELDMRAASQIRLCLAKN----------------VLANVARWSSTKELWEKLEE 209

Query: 129 LYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLIL 188
           +YQAK +SNRLYLKE+FH L++EEGTK+SDHLS LN I+ ELE I V+IDD DKALRLI 
Sbjct: 210 MYQAKSLSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIW 269

Query: 189 SLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDS 248
           SL  SYEHM+ +LMY  + +NF+EVTSKL+SEERR  +    S E  AL     +KK   
Sbjct: 270 SLSSSYEHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKG 329

Query: 249 VQKKACCWGCGQSGHMKKDCPN-KASSSKGSRRDADSVSLIRGDDDQFL 291
            +KK  CWGCGQ GH+KKDC N  A+S+ GS+ DA +V +   +DD+F+
Sbjct: 330 SKKKIICWGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDEFV 362

[Close]

BLAST of Moc05g13830 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.0e-31
Identity = 87/304 (28.62%), Postives = 152/304 (50.00%), Query Frame = 0


Query: 5   MSPVKIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSVITLRSAWVR 64
           MS VK ++ KF+G   F  WQ +++D+LIQ GLHK             L V + +   ++
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKV------------LDVDSKKPDTMK 60

Query: 65  AAQQRWLNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEALY 124
           A     L++   S I + +                 D ++ +      A+ +W +LE+LY
Sbjct: 61  AEDWADLDERAASAIRLHL----------------SDDVVNNIIDEDTARGIWTRLESLY 120

Query: 125 QAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLILSL 184
            +K ++N+LYLK+Q + L + EGT    HL+  N +I +L  + VKI++ DKA+ L+ SL
Sbjct: 121 MSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSL 180

Query: 185 PPSYEHMKPILMYENDTLNFTEVTSKLLSEE---RRPNSEGRT------------SHEDS 244
           P SY+++   +++   T+   +VTS LL  E   ++P ++G+             S  + 
Sbjct: 181 PSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNY 240

Query: 245 ALVASNWKKKNDSVQKKACCWGCGQSGHMKKDCPNK---ASSSKGSRRDADSVSLIRGDD 291
               +  K KN S  +   C+ C Q GH K+DCPN       + G + D ++ ++++ +D
Sbjct: 241 GRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNND 276

[Close]

BLAST of Moc05g13830 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-10
Identity = 67/280 (23.93%), Postives = 122/280 (43.57%), Query Frame = 0


Query: 5   MSPVKIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKG-RPSEGASEKLSVITLRSAWV 64
           M   K +++ FDG   + +W+ +++ +L +  + K + G  P+E          +  +W 
Sbjct: 1   MDKAKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVDGLMPNE----------VDDSWK 60

Query: 65  RAAQQRWLNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEAL 124
           +A                      RCA   II     D  +  +     A+++ E L+A+
Sbjct: 61  KAE---------------------RCAKSTIIEYL-SDSFLNFATSDITARQILENLDAV 120

Query: 125 YQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLILS 184
           Y+ K ++++L L+++  +L++     +  H    + +I EL     KI++ DK   L+++
Sbjct: 121 YERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLIT 180

Query: 185 LPPSYEHM---KPILMYENDTLNFTEVTSKLLSEE-RRPNSEGRTS--------HEDSAL 244
           LP  Y+ +      L  EN TL F  V ++LL +E +  N    TS        H ++  
Sbjct: 181 LPSCYDGIITAIETLSEENLTLAF--VKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNT 240

Query: 245 VASNWKKKNDSVQK---------KACCWGCGQSGHMKKDC 263
             +N  K   +  K         K  C  CG+ GH+KKDC
Sbjct: 241 YKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDC 245

[Close]

BLAST of Moc05g13830 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.9e-96
Identity = 196/267 (73.41%), Postives = 207/267 (77.53%), Query Frame = 0


Query: 1   MSFFMSPVKIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSVI--TL 60
           MSFFMSPVKID+EKFDG INFGLWQVQVKDVLIQS LHKALKGRPSEGASEKLS     +
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  RSAWVRAAQQRWLNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWE 120
            S+       R   K   S +               I  S    ++ +    S AKELWE
Sbjct: 355 ESS---GGSSRGSKK---SSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWE 414

Query: 121 KLEALYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKAL 180
           KLEALYQAKGISNRLYLKEQFHTL++EEG K+SDHLSNLNSIIFELE IEVKIDD DKAL
Sbjct: 415 KLEALYQAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKAL 474

Query: 181 RLILSLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKK 240
           RLILSLP SYEHMKPILMY  DTLNF EVTSKLLSEERR  SEGRTSHEDSALV SNWKK
Sbjct: 475 RLILSLPXSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKK 534

Query: 241 KNDSVQKKACCWGCGQSGHMKKDCPNK 266
           K DSVQKKACCWGCGQSGHMKKDCPN+
Sbjct: 535 KKDSVQKKACCWGCGQSGHMKKDCPNR 555

[Close]

BLAST of Moc05g13830 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 6.9e-66
Identity = 148/289 (51.21%), Postives = 192/289 (66.44%), Query Frame = 0


Query: 9   KIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS-EKLSVITLRSAWVR 68
           + D+EKFDGRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG   +K S  +      +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 63

Query: 69  AAQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEA 128
            +++ W  L+    S I + +  +                ++ + A  S  KELWEKLE 
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKN----------------VLANVARWSSTKELWEKLEE 123

Query: 129 LYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLIL 188
           +YQAK +SNRLYLKE+FH L++EEGTK+SDHLS LN I+ ELE I V+IDD DKALRLI 
Sbjct: 124 MYQAKSLSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIW 183

Query: 189 SLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDS 248
           SLP SYEHM+ +LMY  + +NF+EVTSKL+SEERR  +    S E  AL     +KK   
Sbjct: 184 SLPSSYEHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKG 243

Query: 249 VQKKACCWGCGQSGHMKKDCPN-KASSSKGSRRDADSVSLIRGDDDQFL 291
            +KK  CWGCGQ GH+KKDC N  A+S+ GS+ DA +V +   +DD+F+
Sbjct: 244 SKKKIICWGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDEFV 276

[Close]

BLAST of Moc05g13830 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 5.9e-65
Identity = 147/289 (50.87%), Postives = 190/289 (65.74%), Query Frame = 0


Query: 9   KIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS-EKLSVITLRSAWVR 68
           + D+EKFDGRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG   +K S  +      +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 63

Query: 69  AAQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEA 128
            +++ W  L+    S I + +  +                ++ + A  S  KELWEKLE 
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKN----------------VLANVARWSSTKELWEKLEE 123

Query: 129 LYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLIL 188
           +YQAK +SNRLYLKE+FH L++EEGTK+SDHLS LN I+ ELE I V IDD DKALRLI 
Sbjct: 124 MYQAKSLSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVDIDDEDKALRLIW 183

Query: 189 SLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDS 248
           SLP SYEHM+ +LMY  + +NF+EVTSKL+SEERR  +    S E  AL     +KK   
Sbjct: 184 SLPSSYEHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKG 243

Query: 249 VQKKACCWGCGQSGHMKKDCPN-KASSSKGSRRDADSVSLIRGDDDQFL 291
            +KK  CWGCGQ GH+KKDC N  A+ + GS+ DA +V +   +DD+F+
Sbjct: 244 SKKKIICWGCGQPGHLKKDCKNGGANLANGSKSDATNVVVFENEDDEFV 276

[Close]

BLAST of Moc05g13830 vs. ExPASy TrEMBL
Match: A0A6A2YS90 (Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00172 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 5.9e-65
Identity = 147/289 (50.87%), Postives = 191/289 (66.09%), Query Frame = 0


Query: 9   KIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS-EKLSVITLRSAWVR 68
           + D+EKFDGRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG   +K S  +      +
Sbjct: 90  RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 149

Query: 69  AAQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEA 128
            +++ W  L+    S I + +  +                ++ + A  S  KELWEKLE 
Sbjct: 150 MSEEEWEELDMRAASQIRLCLAKN----------------VLANVARWSSTKELWEKLEE 209

Query: 129 LYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLIL 188
           +YQAK +SNRLYLKE+FH L++EEGTK+SDHLS LN I+ ELE I V+IDD DKALRLI 
Sbjct: 210 MYQAKSLSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIW 269

Query: 189 SLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDS 248
           SL  SYEHM+ +LMY  + +NF+EVTSKL+SEERR  +    S E  AL     +KK   
Sbjct: 270 SLSSSYEHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKG 329

Query: 249 VQKKACCWGCGQSGHMKKDCPN-KASSSKGSRRDADSVSLIRGDDDQFL 291
            +KK  CWGCGQ GH+KKDC N  A+S+ GS+ DA +V +   +DD+F+
Sbjct: 330 SKKKIICWGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDEFV 362

[Close]

BLAST of Moc05g13830 vs. ExPASy TrEMBL
Match: A0A6A3DA47 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000132pilonHSYRG00093 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 7.7e-65
Identity = 146/288 (50.69%), Postives = 191/288 (66.32%), Query Frame = 0


Query: 9   KIDMEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPS---EGAS-EKLSVITLRSAWVR 68
           + D+EKFDGRINFGLWQVQVKD+LIQSGL+KALKG+P+   EG   +K S  +      +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLFEGKEPDKPSDSSGDKGKSK 63

Query: 69  AAQQRW--LNKPPISGIVISILAHFRCACMYIIHQSGDDGLMESSAGSSKAKELWEKLEA 128
            +++ W  L+    S I + +  +                ++ + A  S  KELWEKLE 
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKN----------------VLANVARWSSTKELWEKLEE 123

Query: 129 LYQAKGISNRLYLKEQFHTLRIEEGTKVSDHLSNLNSIIFELEVIEVKIDDGDKALRLIL 188
           +YQAK +SNRLYLKE+FH L++EEGTK+SDHLS LN I+ ELE I V+IDD DKALRLI 
Sbjct: 124 MYQAKSLSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIW 183

Query: 189 SLPPSYEHMKPILMYENDTLNFTEVTSKLLSEERRPNSEGRTSHEDSALVASNWKKKNDS 248
           SLP SYEHM+ +LMY  + +NF+EVTSKL+SEERR  +    S E  AL     +KK   
Sbjct: 184 SLPSSYEHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVFGNRKKYKG 243

Query: 249 VQKKACCWGCGQSGHMKKDCPN-KASSSKGSRRDADSVSLIRGDDDQF 290
            ++K  CWGCGQ GH+KKDC N  A+S+ GS+ DA +V +   +DD+F
Sbjct: 244 SKRKIICWGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDEF 275

The following BLAST results are available for this feature:

BLAST of Moc05g13830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.0e-95	73.41	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF5765959.1	7.6e-67	52.30	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5758504.1	2.2e-66	52.30	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAE8717380.1	1.4e-65	51.21	hypothetical protein F3Y22_tig00110050pilonHSYRG00143 [Hibiscus syriacus]	[more]
KAE8682180.1	1.2e-64	50.87	Transcription initiation factor IIA subunit 2 [Hibiscus syriacus]	[more]

BLAST of Moc05g13830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.0e-31	28.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.0e-10	23.93	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc05g13830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	4.9e-96	73.41	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6A3BK59	6.9e-66	51.21	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3CWI3	5.9e-65	50.87	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A2YS90	5.9e-65	50.87	Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A6A3DA47	7.7e-65	50.69	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]

BLAST of Moc05g13830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 248..264 e-value: 0.0033 score: 26.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 249..264 score: 10.855963
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 91..220 e-value: 1.9E-31 score: 108.7
None	No IPR available	GENE3D	4.10.60.10		coord: 241..283 e-value: 7.8E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..290
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 106..252
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..49
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..49
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 106..252
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 238..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13830.1	Moc05g13830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding