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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAATTAATTGAAACTAGGCTTCCCCCATTCCCCGATGCCTCTATAAATTGCAATCCTCAGTTCTCACAATCTCAAAAACCTGCCATAAAATCATCTCCATTGCCATATTCTGCCATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTGGAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGATTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCCGTCTCAGCCCTCAACTTCTCGGCTCCGGCCGCCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTCTAA mRNA sequence ATGCAATTAATTGAAACTAGGCTTCCCCCATTCCCCGATGCCTCTATAAATTGCAATCCTCAGTTCTCACAATCTCAAAAACCTGCCATAAAATCATCTCCATTGCCATATTCTGCCATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTGGAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGATTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCCGTCTCAGCCCTCAACTTCTCGGCTCCGGCCGCCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTCTAA Coding sequence (CDS) ATGCAATTAATTGAAACTAGGCTTCCCCCATTCCCCGATGCCTCTATAAATTGCAATCCTCAGTTCTCACAATCTCAAAAACCTGCCATAAAATCATCTCCATTGCCATATTCTGCCATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTGGAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGATTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCCGTCTCAGCCCTCAACTTCTCGGCTCCGGCCGCCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTCTAA Protein sequence MQLIETRLPPFPDASINCNPQFSQSQKPAIKSSPLPYSAMALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL
Homology
BLAST of Moc05g00990 vs. NCBI nr
Match: KGN56847.1 (hypothetical protein Csa_010766 [Cucumis sativus]) HSP 1 Score: 275.4 bits (703), Expect = 5.2e-70 Identity = 160/248 (64.52%), Postives = 181/248 (72.98%), Query Frame = 0 Query: 40 MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99 M LLQP L ALFFL +FSP+LSFP NSS F +S NPS +L TS E+SGR RRKN Sbjct: 1 MPFLLQPPLFALFFL-TSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKN 60
Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTS-RLRPPPWTSYFHG 159 TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS R S PS+ RPP W++YFHG Sbjct: 61 TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPSSGISQRPPLWSNYFHG 120
Query: 160 QSSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASAN 219 Q+SASR+PQMTLNDYL PPSLR YSGAA+DMAH LPLHPLLAQ P PRT++AN Sbjct: 121 QASASREPQMTLNDYLT---MPPSLRSYSGAAIDMAHF--LPLHPLLAQPPPLPRTSTAN 180
Query: 220 GINGQQNQFAAGQLGQRM-------------GTPTAEQQPPQDVIDVNSEEHECNSDGSE 272 +N QQNQ AG Q G P +E+QPPQDVID+NSEE++C+SD SE Sbjct: 181 RMNFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSE 240
BLAST of Moc05g00990 vs. NCBI nr
Match: KAG6597359.1 (hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 260.8 bits (665), Expect = 1.3e-65 Identity = 152/253 (60.08%), Postives = 172/253 (67.98%), Query Frame = 0 Query: 34 PLPYSAMALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGR 93 P P S+ LL L L F + AFSP+L+FPW+SS ++KSGWNPS EELL SGETS R Sbjct: 31 PWPPSSFKLLCLLCLLCLLFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGETSSR 90
Query: 94 RYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWT 153 RRK+TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN LAS G S S RPP WT Sbjct: 91 PPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSRLVPSSASSQRPPVWT 150
Query: 154 SYFHGQSSASRQPQMTLNDYLAQ--TRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP- 213 YFHGQ+SASR+PQ+TLN+ L RQP SLR Y VDMAH LPLHPLLAQ PP Sbjct: 151 DYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHL--LPLHPLLAQPPPP 210
Query: 214 -RTASANGIN---------GQQNQFAAGQLGQRMGTPTAEQ-QPPQDVIDVNS-EEHECN 272 R +ANG+N G QNQ G AEQ QP Q+VID+NS EE++C+ Sbjct: 211 RRITTANGVNEDAAGQRWQGNQNQRNNGGARTTSARSAAEQRQPRQEVIDLNSTEENDCS 270
BLAST of Moc05g00990 vs. NCBI nr
Match: KAA0049241.1 (hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK17317.1 hypothetical protein E5676_scaffold434G001720 [Cucumis melo var. makuwa]) HSP 1 Score: 258.8 bits (660), Expect = 5.1e-65 Identity = 152/247 (61.54%), Postives = 179/247 (72.47%), Query Frame = 0 Query: 40 MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99 MA LLQP L ALFFL +FSP+ S PWNSS F KSG NPS +++L TS E+S R R+N Sbjct: 1 MAFLLQPPLFALFFL-TSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRP-SRQN 60
Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWTSYFHGQ 159 TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS R S P + PP +FHGQ Sbjct: 61 TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPCSGVSHRPP---FFHGQ 120
Query: 160 SSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANG 219 +SASR+PQMTLNDYL PPSLR +SGAA+DMAH LPLHPLLA+ P PRT++ N Sbjct: 121 ASASREPQMTLNDYLT---MPPSLRSHSGAAIDMAHF--LPLHPLLARPPPLPRTSTPNS 180
Query: 220 INGQQNQFAA-------------GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSED 272 +N QQNQ A G++ + G P +EQQPPQDVID++SEE++C+SDGSE Sbjct: 181 MNFQQNQAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEG 236
BLAST of Moc05g00990 vs. NCBI nr
Match: KAG6582389.1 (hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sororia] >KAG6582743.1 hypothetical protein SDJN03_22745, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 109.4 bits (272), Expect = 5.0e-20 Identity = 92/219 (42.01%), Postives = 103/219 (47.03%), Query Frame = 0 Query: 63 SFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHH 122 SFPW SS FDKS WNPS++ELL TS +TS R RKNTIFGAPCGLCGQ I SE L HH Sbjct: 10 SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPC-RKNTIFGAPCGLCGQGILVSETLNHH 69
Query: 123 YNYHFLQNQLASSGRSPSQPSTSRLRPP----------PWTSYFHGQSSASRQPQMTLND 182 L + L P S LR PW S S+ P TL Sbjct: 70 CTISCLMSLLLLG------PIISLLRKLLAAAVMDQLFPWPSL-----CFSKTPNDTLRL 129
Query: 183 Y-LAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLG 242 + A T RR AVDM AH LPLHPLLAQ PP + N I Sbjct: 130 HDDAATVSKKLFRR----AVDM--AHWLPLHPLLAQPPPTVLTFNRIR------------ 182
Query: 243 QRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLS 271 + + E+ C+S GSEDLDLTLS Sbjct: 190 ----------------LWRGNNENNCSSGGSEDLDLTLS 182
BLAST of Moc05g00990 vs. ExPASy TrEMBL
Match: A0A0A0L892 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 2.5e-70 Identity = 160/248 (64.52%), Postives = 181/248 (72.98%), Query Frame = 0 Query: 40 MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99 M LLQP L ALFFL +FSP+LSFP NSS F +S NPS +L TS E+SGR RRKN Sbjct: 1 MPFLLQPPLFALFFL-TSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKN 60
Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTS-RLRPPPWTSYFHG 159 TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS R S PS+ RPP W++YFHG Sbjct: 61 TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPSSGISQRPPLWSNYFHG 120
Query: 160 QSSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASAN 219 Q+SASR+PQMTLNDYL PPSLR YSGAA+DMAH LPLHPLLAQ P PRT++AN Sbjct: 121 QASASREPQMTLNDYLT---MPPSLRSYSGAAIDMAHF--LPLHPLLAQPPPLPRTSTAN 180
Query: 220 GINGQQNQFAAGQLGQRM-------------GTPTAEQQPPQDVIDVNSEEHECNSDGSE 272 +N QQNQ AG Q G P +E+QPPQDVID+NSEE++C+SD SE Sbjct: 181 RMNFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSE 240
BLAST of Moc05g00990 vs. ExPASy TrEMBL
Match: A0A5A7U6I9 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001720 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65 Identity = 152/247 (61.54%), Postives = 179/247 (72.47%), Query Frame = 0 Query: 40 MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99 MA LLQP L ALFFL +FSP+ S PWNSS F KSG NPS +++L TS E+S R R+N Sbjct: 1 MAFLLQPPLFALFFL-TSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRP-SRQN 60
Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWTSYFHGQ 159 TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS R S P + PP +FHGQ Sbjct: 61 TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPCSGVSHRPP---FFHGQ 120
Query: 160 SSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANG 219 +SASR+PQMTLNDYL PPSLR +SGAA+DMAH LPLHPLLA+ P PRT++ N Sbjct: 121 ASASREPQMTLNDYLT---MPPSLRSHSGAAIDMAHF--LPLHPLLARPPPLPRTSTPNS 180
Query: 220 INGQQNQFAA-------------GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSED 272 +N QQNQ A G++ + G P +EQQPPQDVID++SEE++C+SDGSE Sbjct: 181 MNFQQNQAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEG 236
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN56847.1 | 5.2e-70 | 64.52 | hypothetical protein Csa_010766 [Cucumis sativus] | [more] |
KAG6597359.1 | 1.3e-65 | 60.08 | hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0049241.1 | 5.1e-65 | 61.54 | hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK173... | [more] |
KAG6582389.1 | 5.0e-20 | 42.01 | hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L892 | 2.5e-70 | 64.52 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 P... | [more] |
A0A5A7U6I9 | 2.5e-65 | 61.54 | C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 134..166 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 252..271 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 106..126 |
Relationships
The following mRNA feature(s) are a part of this gene:
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