Moc05g00990 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g00990
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionC2H2-type domain-containing protein
Locationchr5: 665525 .. 666340 (+)
RNA-Seq ExpressionMoc05g00990
SyntenyMoc05g00990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTAATTGAAACTAGGCTTCCCCCATTCCCCGATGCCTCTATAAATTGCAATCCTCAGTTCTCACAATCTCAAAAACCTGCCATAAAATCATCTCCATTGCCATATTCTGCCATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTGGAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGATTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCCGTCTCAGCCCTCAACTTCTCGGCTCCGGCCGCCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTCTAA

mRNA sequence

ATGCAATTAATTGAAACTAGGCTTCCCCCATTCCCCGATGCCTCTATAAATTGCAATCCTCAGTTCTCACAATCTCAAAAACCTGCCATAAAATCATCTCCATTGCCATATTCTGCCATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTGGAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGATTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCCGTCTCAGCCCTCAACTTCTCGGCTCCGGCCGCCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTCTAA

Coding sequence (CDS)

ATGCAATTAATTGAAACTAGGCTTCCCCCATTCCCCGATGCCTCTATAAATTGCAATCCTCAGTTCTCACAATCTCAAAAACCTGCCATAAAATCATCTCCATTGCCATATTCTGCCATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTGGAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGATTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCCGTCTCAGCCCTCAACTTCTCGGCTCCGGCCGCCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGACGCGACAGCCGCCGTCTCTGAGAAGATATTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAACTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGAATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCTGATGGCTCAGAGGACTTGGATTTGACATTGAGTCTCTAA

Protein sequence

MQLIETRLPPFPDASINCNPQFSQSQKPAIKSSPLPYSAMALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL
Homology
BLAST of Moc05g00990 vs. NCBI nr
Match: KGN56847.1 (hypothetical protein Csa_010766 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 5.2e-70
Identity = 160/248 (64.52%), Postives = 181/248 (72.98%), Query Frame = 0

Query: 40  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99
           M  LLQP L ALFFL  +FSP+LSFP NSS F +S  NPS   +L TS E+SGR  RRKN
Sbjct: 1   MPFLLQPPLFALFFL-TSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKN 60

Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTS-RLRPPPWTSYFHG 159
           TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  S PS+    RPP W++YFHG
Sbjct: 61  TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPSSGISQRPPLWSNYFHG 120

Query: 160 QSSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASAN 219
           Q+SASR+PQMTLNDYL     PPSLR YSGAA+DMAH   LPLHPLLAQ P  PRT++AN
Sbjct: 121 QASASREPQMTLNDYLT---MPPSLRSYSGAAIDMAHF--LPLHPLLAQPPPLPRTSTAN 180

Query: 220 GINGQQNQFAAGQLGQRM-------------GTPTAEQQPPQDVIDVNSEEHECNSDGSE 272
            +N QQNQ  AG   Q               G P +E+QPPQDVID+NSEE++C+SD SE
Sbjct: 181 RMNFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSE 240

BLAST of Moc05g00990 vs. NCBI nr
Match: KAG6597359.1 (hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-65
Identity = 152/253 (60.08%), Postives = 172/253 (67.98%), Query Frame = 0

Query: 34  PLPYSAMALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGR 93
           P P S+  LL    L  L F + AFSP+L+FPW+SS ++KSGWNPS EELL  SGETS R
Sbjct: 31  PWPPSSFKLLCLLCLLCLLFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGETSSR 90

Query: 94  RYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWT 153
             RRK+TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN LAS G      S S  RPP WT
Sbjct: 91  PPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSRLVPSSASSQRPPVWT 150

Query: 154 SYFHGQSSASRQPQMTLNDYLAQ--TRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP- 213
            YFHGQ+SASR+PQ+TLN+ L     RQP SLR Y    VDMAH   LPLHPLLAQ PP 
Sbjct: 151 DYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHL--LPLHPLLAQPPPP 210

Query: 214 -RTASANGIN---------GQQNQFAAGQLGQRMGTPTAEQ-QPPQDVIDVNS-EEHECN 272
            R  +ANG+N         G QNQ   G          AEQ QP Q+VID+NS EE++C+
Sbjct: 211 RRITTANGVNEDAAGQRWQGNQNQRNNGGARTTSARSAAEQRQPRQEVIDLNSTEENDCS 270

BLAST of Moc05g00990 vs. NCBI nr
Match: KAA0049241.1 (hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK17317.1 hypothetical protein E5676_scaffold434G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 5.1e-65
Identity = 152/247 (61.54%), Postives = 179/247 (72.47%), Query Frame = 0

Query: 40  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99
           MA LLQP L ALFFL  +FSP+ S PWNSS F KSG NPS +++L TS E+S R   R+N
Sbjct: 1   MAFLLQPPLFALFFL-TSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRP-SRQN 60

Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWTSYFHGQ 159
           TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  S P +     PP   +FHGQ
Sbjct: 61  TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPCSGVSHRPP---FFHGQ 120

Query: 160 SSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANG 219
           +SASR+PQMTLNDYL     PPSLR +SGAA+DMAH   LPLHPLLA+ P  PRT++ N 
Sbjct: 121 ASASREPQMTLNDYLT---MPPSLRSHSGAAIDMAHF--LPLHPLLARPPPLPRTSTPNS 180

Query: 220 INGQQNQFAA-------------GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSED 272
           +N QQNQ  A             G++ +  G P +EQQPPQDVID++SEE++C+SDGSE 
Sbjct: 181 MNFQQNQAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEG 236

BLAST of Moc05g00990 vs. NCBI nr
Match: KAG6582389.1 (hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sororia] >KAG6582743.1 hypothetical protein SDJN03_22745, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 5.0e-20
Identity = 92/219 (42.01%), Postives = 103/219 (47.03%), Query Frame = 0

Query: 63  SFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHH 122
           SFPW SS FDKS WNPS++ELL TS +TS R   RKNTIFGAPCGLCGQ I  SE L HH
Sbjct: 10  SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPC-RKNTIFGAPCGLCGQGILVSETLNHH 69

Query: 123 YNYHFLQNQLASSGRSPSQPSTSRLRPP----------PWTSYFHGQSSASRQPQMTLND 182
                L + L         P  S LR            PW S        S+ P  TL  
Sbjct: 70  CTISCLMSLLLLG------PIISLLRKLLAAAVMDQLFPWPSL-----CFSKTPNDTLRL 129

Query: 183 Y-LAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLG 242
           +  A T      RR    AVDM  AH LPLHPLLAQ PP   + N I             
Sbjct: 130 HDDAATVSKKLFRR----AVDM--AHWLPLHPLLAQPPPTVLTFNRIR------------ 182

Query: 243 QRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLS 271
                           +   + E+ C+S GSEDLDLTLS
Sbjct: 190 ----------------LWRGNNENNCSSGGSEDLDLTLS 182

BLAST of Moc05g00990 vs. ExPASy TrEMBL
Match: A0A0A0L892 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.5e-70
Identity = 160/248 (64.52%), Postives = 181/248 (72.98%), Query Frame = 0

Query: 40  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99
           M  LLQP L ALFFL  +FSP+LSFP NSS F +S  NPS   +L TS E+SGR  RRKN
Sbjct: 1   MPFLLQPPLFALFFL-TSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKN 60

Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTS-RLRPPPWTSYFHG 159
           TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  S PS+    RPP W++YFHG
Sbjct: 61  TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPSSGISQRPPLWSNYFHG 120

Query: 160 QSSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASAN 219
           Q+SASR+PQMTLNDYL     PPSLR YSGAA+DMAH   LPLHPLLAQ P  PRT++AN
Sbjct: 121 QASASREPQMTLNDYLT---MPPSLRSYSGAAIDMAHF--LPLHPLLAQPPPLPRTSTAN 180

Query: 220 GINGQQNQFAAGQLGQRM-------------GTPTAEQQPPQDVIDVNSEEHECNSDGSE 272
            +N QQNQ  AG   Q               G P +E+QPPQDVID+NSEE++C+SD SE
Sbjct: 181 RMNFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSE 240

BLAST of Moc05g00990 vs. ExPASy TrEMBL
Match: A0A5A7U6I9 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001720 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65
Identity = 152/247 (61.54%), Postives = 179/247 (72.47%), Query Frame = 0

Query: 40  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKN 99
           MA LLQP L ALFFL  +FSP+ S PWNSS F KSG NPS +++L TS E+S R   R+N
Sbjct: 1   MAFLLQPPLFALFFL-TSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRP-SRQN 60

Query: 100 TIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSPSQPSTSRLRPPPWTSYFHGQ 159
           TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  S P +     PP   +FHGQ
Sbjct: 61  TIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF-RGHSNPCSGVSHRPP---FFHGQ 120

Query: 160 SSASRQPQMTLNDYLAQTRQPPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANG 219
           +SASR+PQMTLNDYL     PPSLR +SGAA+DMAH   LPLHPLLA+ P  PRT++ N 
Sbjct: 121 ASASREPQMTLNDYLT---MPPSLRSHSGAAIDMAHF--LPLHPLLARPPPLPRTSTPNS 180

Query: 220 INGQQNQFAA-------------GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSED 272
           +N QQNQ  A             G++ +  G P +EQQPPQDVID++SEE++C+SDGSE 
Sbjct: 181 MNFQQNQAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEG 236

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56847.15.2e-7064.52hypothetical protein Csa_010766 [Cucumis sativus][more]
KAG6597359.11.3e-6560.08hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0049241.15.1e-6561.54hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK173... [more]
KAG6582389.15.0e-2042.01hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8922.5e-7064.52C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 P... [more]
A0A5A7U6I92.5e-6561.54C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..271
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 106..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g00990.1Moc05g00990.1mRNA