Moc04g30010 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g30010
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	chr4: 22392734 .. 22399363 (-)
RNA-Seq Expression	Moc04g30010
Synteny	Moc04g30010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACTTTTCTGAAAAGAAGAATTACATTTGAAAGTTACATTGGAAGCAGTAGATTTCTTCTTGCTGTAACTGATGAAGATATTACTGACTTGAAAAACAACCGTGAAAGCTCTCATTTTAACTGTTTTACTGCGCTCTGTGATTCTAGAGAGGTGGGAGGAATCTTTGATTTAAGTTTATTCATCTGGGGTCAGGATGCTCTGAACTCAAATCAGTTTTCGATTTTTTTTATTGATTTATTATTATTATTATTATTATTATTTGTTGGTTTTGTTCTACTTTTTGTTTGTTCAGTTCAAGAATGGCTCGTTCTCTTTCATTTCTCTTGCGTCTGTCTGCCGACAGGGAATCTATTCCATTCTAAATACTGATAAATATTTGATGTGGATGGGTATTTTTGTTAAGGAAATCGAGAACTAAAATTACTTTAATTAAGAAATAAATACTTTACCTGTCAAGTTACAGGTTAAAAAATACTTTTGGTCCATGTATTTTGCCCAAGTTAGTTCTTGAATTTTAGATTGTAATGGTTTTATCTTTGGAATTCCAAATTTGGGTTACAATTTAGTCTTGATTTAGAGAATTAAATGTCTTTATAAATTACAAAGAAGAAATCGAAATGTAATAAAAAATTGACACTCGGTTTTGATGAGATTTTTGTAGAATTAAATTGTTACAATTTTTTAACTATAGAGATTAAATTGTTACCGATTTGAGATTATATGAAATTCCTTACTTCAAAAAAAAAAACCTAAATTATATATCTTGCTATAATATTCCAGGTGAAATTTTTTGTATAATTGATATTTTATATTTGTATTGTATATCATGAATTGATATCAATTAATCTTTAATATCGTTTTCAAGCTTTCCAATTTCTGCCAATGCCTTTATTCCTCGACTAACATGAAAATAAATCATAAACAAGGAGCCCATGTTTATCAATGTGAAGGGTTTTTTTTTTTGGAAAAAGGAAAAAATTTATGGGCAACATCAAACGAACTTTGTGTAGATAATTGAGAAATCGTCAGATTTTGAAGCCCGAGTTTATGAAATCTTGTTCCACTCAAACAAAGTCGAGATCTTAAATATATTTATAATCTTAATTTTAATAATTTGTTCTTTGTAAATGATTAATAATGTTTTGTTTAATAATTATGTTCGATTTCAAATTCAAACACCAACTAGAATATATCTCAACTAAAACATTTATAATGTTTTAAAATTTTATGGTTAAAATGTAACTCTTTGGCTTTTTTAACAAATGTAACAAATTTGAGAGTATTTGAATCTTGAATGAATCTCTTAGGTGTAATTATCTGATAATTACGGGGAACAATCAAATGCTAAATATATAATTTAGTGCCTGTGTATTTTTTTTTTAAAAGTTTCAAATTTAGTGTTTTTCTTTTTAAATTAGCGCATGCATAAATCTTGATTAAAGAAATTCAACCAAATTGCAAAAACTAGGGAGATTATACATAACGGTATTGTGCTAGTCACACTCACACACAAATTGATGCAAGTTTGTGTGAAGCTTAAAGAGAGTTAAAGTTTTATAACGTAATTATGAGACATTTTTCTCTACAAGGCAAAACTTCAAACCACACATATACTAAAAAGGTCGAAAATTCAAATCCTCATCCACACATGTTGAAACAAAATAAAAATAAAAAAAATCGGATCTCTAACAAAAAAGATAAAATGAACCGAACCCGACATATTCCTCCAACAACCTACTACCATCCAGTAGCCCCAGTTTATTATTTTGTTTTTCCCTCTTTGAAGAGATGAATAATTTCAACTTTCTAATCGCGTAGAATCAAATTAAGCTCAAAAGACAGAAATTAAAATTTATTGTTTAGTTGTTCACGGTAGATAAATAAAAAGAAAGTATATATTATTTTATTGAAATGTTTTTAATAATAATAGTAATAATAATATATAATATCAATTATATATAATAAATATTTAATTAAATCAATAAACCTAATAAATAAAAATTGAAAATTTCATATTTATTATAAAAAAAGGAAAAAAAAAAAAACTTACAAATATCAAGTTACTTATTAAGCAGGACTCATATTCAAGTTATTTGAAATTATTGCAAATCCAAAAGTTTTTTAATTCCCTTTCTTACTCACCGAGAAAACCCTACTCTGCAACGAGAATTGTTTGAACTCTGTCCACCAAATTGACGTCTCCTTTTCAGACTCTTGATTATCTCTTTCGTTTTCCCCTTTCTCTTCTTCTTCGGTATGAATCTGACTCTGACTTTTCTCTCAATTGAACTTTTCTTTCGCCATAGAACTTTGCATTCATCAATCAGCTGAAATGGGTCTTTCAACAGGTAGAGACAGCCACCATGTTCTTCCACATAGTGTTGGAAAGGAATATGCAGCTGCACCCTCGGCACTTCGGTCGTAACCTCCGTGAGAATCTGGTTTCCAAACTCATGAAAGATGTCGAGGGGACTTGCAGGTTTCTTAACTTTTGCCCCCTTTTTATTTGCTGCAACGTTGCTTTTGATGTTCTTTTCTTTTTGTTGACATTTTCTGAGAAAATTCCATGGACAAAATGAAGAGCTGACTCGATCTTAGATTCTGAGGTCCTTGGGTGGCATCCCATTTTCTTTGTTTAACTCGTAAAGTACTATAATTTCTTTCACTTTCTTCTGCCTTTTCGTTTAGTAGTATTATTGGGTGGTTTGATGATGTGAATAATACATCGAAAATATGATTGTTAGAAAGGGGTTGGGCTTCTGAGAAACACGTGAAAAGACAGAGGTGGAATTGATTGGCCAAATTGGAACCACACCTATCACAAAGATAGATACAACAAGACCGCCTCAATCATGTTAGAGGAATAGCAAATGATAATTTAAGGTCTTCAGAAGTGCATTAAACTCACCATTAGAGACAAATCGCCATAGAGAACCTTTGTATTGAATCATTGGTAATTGGTATTAATCATGTGAAGAGCCACAATTCCAGTGAAAATTATAATTTTCTTTAGAGTATTTAACTTCCATAGCCTAGAAAAGGAGGGATGGTGAGTATTATGAGAAGAAATCAACTGATTAAAAAGAGATTTGTGCAGCTGTTTTGTAATTATCAGGTAGGTTTTATTCTTTAGATTGAAGGCCCTTTCTTTAGGCAGGTCTCTAGCTTTTGGGCTGGTTTTTTTTGTATGTCCTTGAATATGTGCTTTTGTTTTCATTTGTCTCAATGAAAAGTTTAGTTTTTTATTAAAAAAGAGAGAGAGAGAGAGATTTGGAAGAGAAAGTTACATAGGTTGATAGGAGTAAGGTCCAGACATTACTATCCTAGTACATGAGTGGCTGCTAATCCCTTCCAAAATAGTAAGAAGGGAGGGAACTTCATCAATGTTTCTATTAAAAAAAGTTCCAACTCTATGTTAACTTTATGGGACGAGTAGAAAGTTTTATGGTGGAAGTACAAATTATGGATGTGGGTGTCAAATGGTTGAATTTTTAGAGGGATTGAGAGGCCTTGGGAAGAGGTGCGGGATGTTGTTAGGTCCAACTCTTCCCTTTGGGCATCTATTTTTAAGTCATTTCGTAATTATCAGTTGAGCTTTATTCTTTTGGATTGAGTGCTTTCTACACAGTTAGATTTATGACTTCTTTTGTGGAGCTGGTTTTTTTGTATGCTCTTATTTTTTCTTTCATATTCCATAATGAAAGTTTGGTTTCTCATTAAAAAAAAAGATATATATATATATATATATATAATTATATGTATGGTCCTCATTACCATAAGGATAGAAATGATTTTTGCAATGAATCAGAGCGTTTTTGGGTATTGTTGTGAAAAACGATGTTTATAAGGTGGTCATATGAAACTTGGGGAAGATGATCAGTGTATGGAAAAGTTTAGTTTGCTGATTGAGCAATTGGAATTGATGGATATTCCTATGTCTAATGGGAAGTTCGGGCAAGTATGAGGGGAAATTTTGTTTTTCTTTAAGATTGACAAGTTAAGATTCTAATTATGTTCCCTAAATCTTTTGACTTTACTACCCTGCTGTTTAATTCCCACCCTTGCCTTTCCAGTCAAAGACAGAGACCTAAAATTTAGGGGACAAAGTGACGACCAATTTTAGCAAAAAACACTCGAATTTGACCATTCCTTACTAGACTGGCCAGAATGATCTACCCTTCTTGTTAGAACAGAGAAATGCAAATTTACCTCTTGCCTTCAAGGATTCAAACCAGGGAAAGACATTCTCCTCTGAAGCCATGTACAAAGGCTCAAAACTACGAACATCATCTCTTACTATTTCCTTAATATGATAGAGGGATCAAAATCGATGGTTGCTTAAGTTTTGCTCCCTCGTATTTTTATTGTGCTGTGCTGCATGGTAGCATAAAATCCTATTAGAGAATAGACCAATCCTTTTGCTGCATATGCATGTCGATCCATGAACAGAAGAAAGCAAATAAAACCAGCTCGATGGATGATATTTCTTTTGTAAGCTTGATATTTCATTCAACTTGTAAACAGTTTGTAGGATTTCATTATTAAGAAACTTTTACTTTGGCACAGCGGACGACATGGTTTTGTAGTAGCAATTACAGGAATTGAGAATATTGGGAAGGGATTGATTCGTGACGGCACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTTTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAGTTGTTTCAATGGTAAACAAGGTAAGTGGGTTTATGCCACATTTTTTAGCTATCTAGTAAGTAATTAATGAAGTCTTTAAATAATAAATATGAATATGACCGCAATCACAACTTTTGTAGATGGGTTTTTTCGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTATATATTTATAAAATATTCCAATTATCTTTTACGTCTCTCATATTTTTCAAACCACCAAGTATCTCCTCTGGATTGGGGCTTGGATTTTTTTTTGTAAGATAAATTGTTCCTTACCAAATATAAATGGTTGTGGTCATCTCATCAATGAGATAGTTCAATGTTTCTCATAAAAAAAGAAATATGCGTGTGTGGTGGGAGTTGGGATAGCATGGCACTGATGATTGGAGATATTTTTTTTATGCCGATTAAACTTGTCATGTTCAGAGAGCTGTGTAATGTTGTATTTAGTGATAAGAGTAAACTGCATTATATGAAAAAGCGAACTGTAAAAAATCTTGAAAAAGAGATTCAAAAATTTATTACAATGCTCTCACTGAGTCGCTGACTCTAGTTCTTACAGCGTTTGATGTATAGTGAAGTGTTCAAGTAAGCCAACACATTTTCTTATTAGTTTCTAGTTTGTTCCTTTGATACTGTACCATGTTGAATTAAATATTGCTCGTCGATGGGATATGTTTGCATAATTGTATTTGATAAAACCCAAACAACCAAAAATATATTGAAATATAAATGATTGAAGAACTAACAAAATTACCCAAGTATTCAAGTTACTTGGAACCTCTCCCTCTCCTCTCTTGAGGTACCACTCAAGCCTAAACCAACTAAATCAATGCCTACCTTCATCTATTCCCCCTCACTCTATTTATAATAAATTCCCCTAACAACTTTCCTAATTAATTACTAATATACGCTTAATACCCTAATAATATTCATAATTCTATCCTTATAGCATTCCCATCAGTAATACACATGCATCTCATTCTTGGCAACCCTATACATAAGTTATCATCTCCAAGCTTTTCTTTTCAATATAAATCGTACCCATTCCCGACTCTAAATACTACGTCTTATTCACACAAACTAATTTCTTAGCTTTCCATTCTGGAACTTCCCATTATTAGGCTTCATAATTGATGCCAACATAGCAAATGCTTCGTAATTGAATTAACTCTCTCTTAACTGTATTTGCAACATCAACGACTTGGGTTTTACTTCTATTGAAATTTTTTCTTCATAAATGTGCTTAATGTTCAATGGATTCATCCTACATTTTGCGTTTCAGTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATATCCCAAACTACACCACTTCAGATGGATCAGTATTTCTCTGTCTCACATGCCTTCTCTAACATCGACTGTTAATCCTGTAGTTGTGTTACATTTATTGAATTGCTTATGTTCTCTTGTAGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATTATTGGGACTCGAGTAGACGCGACTGAAATTGTATGTCTTTTTCTTATTTAGTATCGTCAGTTAATGTCTCTATTGGTAGTTCGATCACTACCGTGATATTAAATTTATTTGCTCCTTTCTCTGAATGGGTTTTTTTCCCCTTCAAGTGGGGCTCTTGAATAAATATATTGGGGTGAATTTAGCTTGGCTCTGAAATTCTGATTAACTTTACCTGAAAGTTCAAAAGTTGTGTCCACTGAAACAGTTTTATCTGTTTTGCATATTCTCTGACCCTGATAGAACTTTGTGCCGCTATCTAATTTTGGAATTTAACTTTTGACTTGCTGCTGATTTAACTGTTGTTTTGGCTTGCAGTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATAAATGATCCTGCAGCAGCTTAG

mRNA sequence

ATGCCTACTTTTCTGAAAAGAAGAATTACATTTGAAAGTTACATTGGAAGCAGTAGATTTCTTCTTGCTGTAACTGATGAAGATATTACTGACTTGAAAAACAACCGTGAAAGCTCTCATTTTAACTGTTTTACTGCGCTCTGTGATTCTAGAGAGGTAGAGACAGCCACCATGTTCTTCCACATAGTGTTGGAAAGGAATATGCAGCTGCACCCTCGGCACTTCGGTCGTAACCTCCGTGAGAATCTGGTTTCCAAACTCATGAAAGATGTCGAGGGGACTTGCAGCGGACGACATGGTTTTGTAGTAGCAATTACAGGAATTGAGAATATTGGGAAGGGATTGATTCGTGACGGCACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTTTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAGTTGTTTCAATGGTAAACAAGATGGGTTTTTTCGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATATCCCAAACTACACCACTTCAGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATTATTGGGACTCGAGTAGACGCGACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATAAATGATCCTGCAGCAGCTTAG

Coding sequence (CDS)

ATGCCTACTTTTCTGAAAAGAAGAATTACATTTGAAAGTTACATTGGAAGCAGTAGATTTCTTCTTGCTGTAACTGATGAAGATATTACTGACTTGAAAAACAACCGTGAAAGCTCTCATTTTAACTGTTTTACTGCGCTCTGTGATTCTAGAGAGGTAGAGACAGCCACCATGTTCTTCCACATAGTGTTGGAAAGGAATATGCAGCTGCACCCTCGGCACTTCGGTCGTAACCTCCGTGAGAATCTGGTTTCCAAACTCATGAAAGATGTCGAGGGGACTTGCAGCGGACGACATGGTTTTGTAGTAGCAATTACAGGAATTGAGAATATTGGGAAGGGATTGATTCGTGACGGCACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTTTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAGTTGTTTCAATGGTAAACAAGATGGGTTTTTTCGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATATCCCAAACTACACCACTTCAGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATTATTGGGACTCGAGTAGACGCGACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATAAATGATCCTGCAGCAGCTTAG

Protein sequence

MPTFLKRRITFESYIGSSRFLLAVTDEDITDLKNNRESSHFNCFTALCDSREVETATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA

Homology

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BLAST of Moc04g30010 vs. NCBI nr
Match: XP_022939214.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 366.7 bits (940), Expect = 1.5e-97
Identity = 178/189 (94.18%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 45  TALCDSREVETATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVA 104
           TA+ ++R+V+ ATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVA
Sbjct: 60  TAMLETRKVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVA 119

Query: 105 ITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIF 164
           ITGIENIGKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+V+MVNKMGFFAEAGPVQIF
Sbjct: 120 ITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIF 179

Query: 165 VSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFL 224
           VSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFL
Sbjct: 180 VSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFL 239

Query: 225 GVINDPAAA 234
           GVINDPAAA
Sbjct: 240 GVINDPAAA 248

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BLAST of Moc04g30010 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.3 bits (926), Expect = 6.3e-96
Identity = 176/181 (97.24%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 53  VETATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 112
           V+ ATMFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIG
Sbjct: 1   VKGATMFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIG 60

Query: 113 KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPD 172
           KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPD
Sbjct: 61  KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPD 120

Query: 173 DMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 232
           DMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA
Sbjct: 121 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 180

Query: 233 A 234
           A
Sbjct: 181 A 181

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BLAST of Moc04g30010 vs. NCBI nr
Match: KAG6579070.1 (hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.5 bits (924), Expect = 1.1e-95
Identity = 177/188 (94.15%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 46  ALCDSREVETATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAI 105
           A   S  V+ ATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAI
Sbjct: 73  AAAASLPVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAI 132

Query: 106 TGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFV 165
           TGIENIGKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+V+MVNKMGFFAEAGPVQIFV
Sbjct: 133 TGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFV 192

Query: 166 SNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 225
           SNHLIPDDMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG
Sbjct: 193 SNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 252

Query: 226 VINDPAAA 234
           VINDPAAA
Sbjct: 253 VINDPAAA 260

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BLAST of Moc04g30010 vs. NCBI nr
Match: XP_022141702.1 (DNA-directed RNA polymerase II subunit RPB7 [Momordica charantia] >XP_022141704.1 DNA-directed RNA polymerase II subunit RPB7 [Momordica charantia] >XP_022141705.1 DNA-directed RNA polymerase II subunit RPB7 [Momordica charantia] >XP_022141706.1 DNA-directed RNA polymerase II subunit RPB7 [Momordica charantia])

HSP 1 Score: 359.0 bits (920), Expect = 3.1e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 234
           SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

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BLAST of Moc04g30010 vs. NCBI nr
Match: XP_018855586.1 (DNA-directed RNA polymerase II subunit RPB7 [Juglans regia] >XP_040993990.1 DNA-directed RNA polymerase II subunit RPB7 [Juglans microcarpa x Juglans regia] >XP_042958974.1 DNA-directed RNA polymerase II subunit RPB7 [Carya illinoinensis] >KAF5470500.1 hypothetical protein F2P56_011007 [Juglans regia] >KAG2670065.1 hypothetical protein I3760_14G066400 [Carya illinoinensis] >KAG6629157.1 hypothetical protein CIPAW_14G064200 [Carya illinoinensis] >KAG6678172.1 hypothetical protein I3842_14G066800 [Carya illinoinensis] >KAG7946883.1 hypothetical protein I3843_14G065400 [Carya illinoinensis])

HSP 1 Score: 356.3 bits (913), Expect = 2.0e-94
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 234
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

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BLAST of Moc04g30010 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.5e-95
Identity = 169/174 (97.13%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 232
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

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BLAST of Moc04g30010 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 9.7e-92
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 234
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

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BLAST of Moc04g30010 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-52
Identity = 93/172 (54.07%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
            G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 178 -SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 229
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Moc04g30010 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-52
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
            G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 178 -SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 229
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Moc04g30010 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-52
Identity = 93/172 (54.07%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
            G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 178 -SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 229
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Moc04g30010 vs. ExPASy TrEMBL
Match: A0A6J1FGH6 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 7.2e-98
Identity = 178/189 (94.18%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 45  TALCDSREVETATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVA 104
           TA+ ++R+V+ ATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVA
Sbjct: 60  TAMLETRKVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVA 119

Query: 105 ITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIF 164
           ITGIENIGKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+V+MVNKMGFFAEAGPVQIF
Sbjct: 120 ITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIF 179

Query: 165 VSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFL 224
           VSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFL
Sbjct: 180 VSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFL 239

Query: 225 GVINDPAAA 234
           GVINDPAAA
Sbjct: 240 GVINDPAAA 248

[Close]

BLAST of Moc04g30010 vs. ExPASy TrEMBL
Match: A0A6J1CIV0 (DNA-directed RNA polymerase II subunit RPB7 OS=Momordica charantia OX=3673 GN=LOC111012000 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.5e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 234
           SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Moc04g30010 vs. ExPASy TrEMBL
Match: A0A2P2JY16 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.7e-95
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 51  REVETATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN 110
           RE E A MFFHIVLERNMQLHPR+FGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN
Sbjct: 6   REAE-AIMFFHIVLERNMQLHPRYFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN 65

Query: 111 IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLI 170
           IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLI
Sbjct: 66  IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLI 125

Query: 171 PDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 230
           PDDMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP
Sbjct: 126 PDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 185

Query: 231 AAA 234
           AAA
Sbjct: 186 AAA 187

[Close]

BLAST of Moc04g30010 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 9.7e-95
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 234
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Moc04g30010 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 9.7e-95
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 234
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Moc04g30010 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 337.8 bits (865), Expect = 6.9e-93
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 177
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 178 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 234
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Moc04g30010 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-14
Identity = 43/132 (32.58%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 100 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAG 159
           G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 160 PVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 219
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 220 TIKDDFLGVIND 230
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]

BLAST of Moc04g30010 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-14
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 100 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAG 159
           G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 160 PVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 219
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 220 TIKDDFLG 226
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of Moc04g30010 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.6e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEA 145
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of Moc04g30010 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.6e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 58  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 117
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 118 DGTGFVTFPVKYQCVVFRPFKGEILEA 145
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of Moc04g30010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939214.1	1.5e-97	94.18	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata]	[more]
KAG7032688.1	6.3e-96	97.24	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6579070.1	1.1e-95	94.15	hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022141702.1	3.1e-95	100.00	DNA-directed RNA polymerase II subunit RPB7 [Momordica charantia] >XP_022141704....	[more]
XP_018855586.1	2.0e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 [Juglans regia] >XP_040993990.1 DNA-...	[more]

BLAST of Moc04g30010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	2.5e-95	97.13	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	9.7e-92	92.61	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	2.0e-52	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	2.0e-52	54.65	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	2.0e-52	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of Moc04g30010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGH6	7.2e-98	94.18	DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1CIV0	1.5e-95	100.00	DNA-directed RNA polymerase II subunit RPB7 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A2P2JY16	5.7e-95	96.72	DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Rhizophora mucronata O...	[more]
A0A6J1JSG6	9.7e-95	98.30	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E6V3	9.7e-95	98.30	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Moc04g30010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	6.9e-93	92.61	DNA-directed RNA polymerase II	[more]
AT4G14660.1	2.2e-14	32.58	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	2.9e-14	34.38	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	1.6e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	1.6e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 57..137 e-value: 4.8E-28 score: 99.3
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 58..135
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 135..213 e-value: 1.1E-15 score: 57.8
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 65..121 e-value: 9.5E-13 score: 48.2
None	No IPR available	GENE3D	2.40.50.140		coord: 138..228 e-value: 3.5E-36 score: 125.1
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 46..233
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 59..138 e-value: 2.55536E-40 score: 131.535
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 138..225 e-value: 5.31973E-45 score: 143.555
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 46..233
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 136..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g30010.1	Moc04g30010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding