Moc03g28280 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g28280
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionProtein CLP1 homolog
Locationchr3: 20293742 .. 20294844 (-)
RNA-Seq ExpressionMoc03g28280
SyntenyMoc03g28280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTCACCTCTCTATTTACGTTTATTCTCCGGTAATTCTGAGATCTTCGGCACGGAGCTTTCTCCTTAAACATGGCTCACTTTACCACCAAGTGTGAAAATTGCTGTAAGCTTTAGTAATTTACACTCTTTTGCTGCACATTTTTGCATTATTGTCTTTCTTGGTTAGTTTGATTGCGTTGTAACAGAATTAACAGGGTGAAAAATGATATTGTTTTGAGTGGATGCTGGAAGTGTTATAGGGGGATATCTGAAAGGAAAAGCTAAGATCTTATGGAGTTGTGCGAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAACCAAAGAGCTTTTAGCAATACTTCTATTCCTTTTCCTTGCCTTGAGTTTGTTCTCCTCCTTTTGTTCAATATATTCAGTTTCTTATCCAAAAAAAAAAAATGCTATTGTTTTCAAAGTTTTTGAAACTTTTGTAATTATTTCATCATAAGCCAGCCATTTAGTTTGAAAATTGTATTTGGACGGCTCTGCGTTGACTTATAGTTTTTCCATTATGTTATTCTAAGTTTTGAGTTGGATGTAAAAGGTTTTCACTTGGTAGGGAGCCATGCTTGAAATGGACGGTTCAACTGAATTTGATTACACGGCAGATGAGGAATAAGTTTTGCTGTTTTACATAAGCTTACGAAGGAGATAGTCTTCTCTTCACTGTACTAGCAGGCAGTTTTTTCCTCAATGGCTAAGAACCAGTTCTATATTGTTTATCTACAGACACCCATGACCAATTATGTGAATGTCCATGCCGTACTTGAAGGAAGAAGAAGCTGTGAGTGTCTTAGATGCATCGATCAGGAATGGTTGTCTCAACTAGTTTTTCAGTTTTGTATTTTTGCTTGTGAAGAAGCTTGCCCAAGACTTGGGAGAGGCTATTTCAATCTCGAGCTGCTGGTATGGTTATCAACACAATGGGATGGATCGAGGAAGCCTAG

mRNA sequence

ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTCACCTCTCTATTTACGTTTATTCTCCGGGGGATATCTGAAAGGAAAAGCTAAGATCTTATGGAGTTGTGCGAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAACCAAAGAGCTTTTAGCAATACTTCTATTCCTTTTCCTTGCCTTGAAAGCTTGCCCAAGACTTGGGAGAGGCTATTTCAATCTCGAGCTGCTGGTATGGTTATCAACACAATGGGATGGATCGAGGAAGCCTAG

Coding sequence (CDS)

ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTCACCTCTCTATTTACGTTTATTCTCCGGGGGATATCTGAAAGGAAAAGCTAAGATCTTATGGAGTTGTGCGAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAAGCTTTGCTTTGGGCTATTTGGAAGGAAAGAAACCAAAGAGCTTTTAGCAATACTTCTATTCCTTTTCCTTGCCTTGAAAGCTTGCCCAAGACTTGGGAGAGGCTATTTCAATCTCGAGCTGCTGGTATGGTTATCAACACAATGGGATGGATCGAGGAAGCCTAG

Protein sequence

MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSGGYLKGKAKILWSCASFALGYLEGKKALLWAIWKERNQRAFSNTSIPFPCLESLPKTWERLFQSRAAGMVINTMGWIEEA
Homology
[Close]
BLAST of Moc03g28280 vs. NCBI nr
Match: XP_022134389.1 (protein CLP1 homolog [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-11
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG P TAAGSGSTSSIRQVKLDRESELRIEVG+DSPL LRL SG
Sbjct: 1  MAYGGPPTAAGSGSTSSIRQVKLDRESELRIEVGNDSPLRLRLVSG 46

[Close]
BLAST of Moc03g28280 vs. NCBI nr
Match: XP_008459297.1 (PREDICTED: protein CLP1 homolog [Cucumis melo] >KAA0039517.1 protein CLP1-like protein [Cucumis melo var. makuwa] >TYK15271.1 protein CLP1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 5.7e-11
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSIRQVKLDRESELRIEVGSDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. NCBI nr
Match: XP_023533688.1 (protein CLP1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSVRQVKLDRESELRIEVGNDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. NCBI nr
Match: XP_022990827.1 (protein CLP1 homolog [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSVRQVKLDRESELRIEVGNDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. NCBI nr
Match: XP_022921936.1 (protein CLP1 homolog [Cucurbita moschata] >KAG6602481.1 Protein CLP1-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033157.1 Protein CLP1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSVRQVKLDRESELRIEVGNDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. ExPASy TrEMBL
Match: A0A6J1BYM6 (Protein CLP1 homolog OS=Momordica charantia OX=3673 GN=LOC111006662 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG P TAAGSGSTSSIRQVKLDRESELRIEVG+DSPL LRL SG
Sbjct: 1  MAYGGPPTAAGSGSTSSIRQVKLDRESELRIEVGNDSPLRLRLVSG 46

[Close]
BLAST of Moc03g28280 vs. ExPASy TrEMBL
Match: A0A5A7TDF1 (Protein CLP1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00480 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSIRQVKLDRESELRIEVGSDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. ExPASy TrEMBL
Match: A0A1S3C9X9 (Protein CLP1 homolog OS=Cucumis melo OX=3656 GN=LOC103498469 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSIRQVKLDRESELRIEVGSDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. ExPASy TrEMBL
Match: A0A6J1JJY4 (Protein CLP1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487604 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-11
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSVRQVKLDRESELRIEVGNDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. ExPASy TrEMBL
Match: A0A6J1E2R2 (Protein CLP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430040 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-11
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL LRL SG
Sbjct: 1  MAYGGPATVAGSASTSSVRQVKLDRESELRIEVGNDSPLRLRLLSG 46

[Close]
BLAST of Moc03g28280 vs. TAIR 10
Match: AT3G04680.1 (CLP-similar protein 3 )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 1  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG      PA +     +++++QVKL+RESELRIEV S+ PL LR+ +G
Sbjct: 1  MAYGGPSMNPPALSGAVPGSANLKQVKLERESELRIEV-SEEPLRLRVVNG 50

[Close]
BLAST of Moc03g28280 vs. TAIR 10
Match: AT3G04680.2 (CLP-similar protein 3 )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 1  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLRLFSG 47
          MAYG      PA +     +++++QVKL+RESELRIEV S+ PL LR+ +G
Sbjct: 1  MAYGGPSMNPPALSGAVPGSANLKQVKLERESELRIEV-SEEPLRLRVVNG 50

The following BLAST results are available for this feature:
BLAST of Moc03g28280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134389.14.3e-1189.13protein CLP1 homolog [Momordica charantia][more]
XP_008459297.15.7e-1189.13PREDICTED: protein CLP1 homolog [Cucumis melo] >KAA0039517.1 protein CLP1-like p... [more]
XP_023533688.11.6e-1084.78protein CLP1 homolog [Cucurbita pepo subsp. pepo][more]
XP_022990827.11.6e-1084.78protein CLP1 homolog [Cucurbita maxima][more]
XP_022921936.11.6e-1084.78protein CLP1 homolog [Cucurbita moschata] >KAG6602481.1 Protein CLP1-like protei... [more]
BLAST of Moc03g28280 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc03g28280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BYM62.1e-1189.13Protein CLP1 homolog OS=Momordica charantia OX=3673 GN=LOC111006662 PE=3 SV=1[more]
A0A5A7TDF12.7e-1189.13Protein CLP1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892... [more]
A0A1S3C9X92.7e-1189.13Protein CLP1 homolog OS=Cucumis melo OX=3656 GN=LOC103498469 PE=3 SV=1[more]
A0A6J1JJY48.0e-1184.78Protein CLP1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487604 PE=3 SV=1[more]
A0A6J1E2R28.0e-1184.78Protein CLP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430040 PE=3 SV=1[more]
BLAST of Moc03g28280 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G04680.14.2e-0449.02CLP-similar protein 3 [more]
AT3G04680.24.2e-0449.02CLP-similar protein 3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g28280.1Moc03g28280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0016310 phosphorylation
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005849 mRNA cleavage factor complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0051731 polynucleotide 5'-hydroxyl-kinase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0008270 zinc ion binding