Moc02g16330 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g16330
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3/gypsy retrotransposon protein
Locationchr2: 12288380 .. 12291272 (+)
RNA-Seq ExpressionMoc02g16330
SyntenyMoc02g16330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAACCGGAGTCAGTCTTTGCTTATCAAACCAACCCAACCACCGGCGACTACGAAGCACTGGTTAGTTGGAAAGGCTTACCTGAAGAGGACGCTACATGGGAGTCAGTTAGAGAGATCTACAAGCAGTTCCCTATGTTCCACCTTAAGGACAAGGTGGTTGTTGGGAGGGGGGGAGTGAGGGGTAATGTTAGACCCCCAATCCTGAAGACCTATAGTAGGAAGGATAGAGGGAAAGGCAAAATGGTAATTGAGTGAATATGTAGGCCAACGGCCATGAGAGAGAATAGGGGTAGAGGGACGTGTTGTCCTTTTTAGGAGCAGTGAATGTCATTAGGGGGGATATTCGAGATTTCAGTGTTTTGGGTGCTACATTGTCGCTTTTGAAGAGTTCCCCACCCTCTCGAATTTGTGAGTTGATTTTAGTGTTTTGTTGTGTGCTTTTTCTGGTATCGCCTTCGGGCTTGAAGTTCTATTTCAATCAAAATCTTGTGAGGAGATACCTCACATGTTCTCCCCTTTTCTTTCGGTCCCTCAGTCCTCGGTTGATTGAGTTTTCGAAACTCCAATCTTTCTCTTGATCTCTCGATTTTCCTCTCAATTATAAGATTGTTCCCATAAACTGAATTCTTAACATCCAGAGGATAGCGATGAAGACTTTTTGGTGGCATTGGTGTCTACATTGAAGAGGTGTCTTCAAAGGTATGTTTCACTAACTTCCTTTTAATTATACTTATGTTTTTTCTTTGTCGTACTTCCAAAACAAGATCGAAGCACACGTGTTCGAACGCTTCCGCTGTGGGATCTGATCCTTTCATTTACGAGCTAGCAAGGGGGATCTAATGGACCTGCAAATCAAAAGCTCCAACGATACAAAATTAATCAATCAAACTCATTAACTGAGTTAATCTACAGTCGTTAACTGCGGGCCACTCCACTAAAGACTCGTTTTTTTCACTGTAGAATATTTTCGTATCCATGGATGTACGACCATTAACGGCAAATCAATCTTTCACGAGTGCTCGTAACTCAAGCTGGGTCAAATTATCGTTTTACCCCTCAGTTACATCTTGCTCCTTAAATATCACTACTCCTCTAATGAACAACCCAGTTATGGAATGACCAATAACCGGAAGTCCCTCTCGGGCCAGTGAGAGGGTGAGGCCACTTGTTCAAGTCCCGGAGTCAGCATGTAAGGGAACACTCATCTACTTTCCTAATGTCGGGAATGAGTAAATTCAATCTTGTGTAGTTATGTTTCCAACTTCCCACTCAGTCTCGTCCCCAAAAAGGTAGGATTATTGAGTCAGTTACTCGGCCACTCTCACCCATACATATCAAAGGACGAGCCCTCACGGGCGGGAGTCCATAACTCACTCAGGATTGAGAATGAGTTGTATGGTCATCTCCTATGAAATAACAATCTATTAGTCAACGACGTTACATCTAAAGATTAGCTATTTCTCGGTCCAGTCTTATATAAACTCATTATATAAGATACACCACTCGCATGTCTCCACACGAACGACTTGGATCGGGTCGTTTGTAACATTTACAAAGTGGGTCGTATCTATAGTGTTGCCAAGATAAGGTACCCAACCTTATTCATATACTATAAACCCTTTAGGTTATTTCCGAGATATTATCCACTTATACATCAAGGGTATATCAAATATATACTCAGTATATATGGTATATCAAATATATACCCAGTATATATATTGTCCCAGTTACATGAAAATAACCTTGCATGTTTAGTTTATTAGATTTGGACAATAAATTGAACAACAATTTGATTGAATATGAAAACATAACTTTATTGAATATAAATCTGTTTTTACATAATCACGAGCTACGAGTTTAGGGCAATACACCCAACAGTCAGGAAGCTCGTTGTTGGTGAAACCTGGAGGTTGTTTCATATATACTTGTTCCTTGAGTAAACCATGTAAGAAGACATTCTTGATATCTAGTTGCGTTAGCTTCCATCCTGCGCTCACTGCAAGAGATAAAATTAGTCTAATAGTACTAGATTTTACCACTGGGCTATAGTTTTATTCATAATTTATTCCTTGTACTTGTGTGTATCCTTGAGCTACGAGTCTAGCTTTGTGTCATTCAATTGATTCATCTTCTTTGTATTTAGTTTTTAGTATTCATTTTGACCCTATCACTGGTATGTTCAGGTCTCTCCACTAACTCCCAAGTATTGTTTTGATAGAGGGCCATCATTTCTTCCTCCATAGCTTGCTTCCAATGGGGTATGGTCAATACCACCTTGTAGTTCTTTGGTTCTGACTCTTGATCCATGGACATTAATGCTCTTTGCGTAGTATTATGTTTTATCCTTTGAATTTCTTGAGCGAAAGCGAGATTAAGTGTTGAATTTTCCCTTAAAGCATCATAGTGTATCACTAGAACCACACTGGTGCATTGTCTCTCTATTTTTTCAAGTTCCGTCGAATTCCTTTATTCAAGAAAAGTGGTGCAAATTTGGCTATTTTTCTAGGCCAAATTTACCATCTACATAAATAATACATCTTATTTTTGTTAAATGTTGTTTTTTAGCAAAACAAAGTAATTGAAATTAGGATAAGATATCAAGACATTCAAGGGCAAGAAAGTTTGTCATCTCTAAAAGCTAGTTCTTGAGCCAAATATTATGATCTTGTTGTAGAATCGCTCTCCTTGCTATACAACGAGTGACTCCATTTACTTCTCTATTTGTGAACTTAACTGTAAATTGAGCTCAATCAAGTAAGGAAGCATTTACATTTGAAACGATCATCCCTATTTCTAAGAGATCTTCTACTTCTTGGTTGAATAGGTTGTAGATTCGGAGCGAGTCAATTTCCAGTTAGAAAGGGAAGATTCCAGCATCAATGACTAG

mRNA sequence

ATGATCGAACCGGAGTCAGTCTTTGCTTATCAAACCAACCCAACCACCGGCGACTACGAAGCACTGGTTAGTTGGAAAGGCTTACCTGAAGAGGACGCTACATGGGAGTCAGTTAGAGAGATCTACAAGCAGTTCCCTATGTTCCACCTTAAGGACAAGGTGGTTGTTGGGAGGGGGGGAGTGAGGGGTAATGTTAGACCCCCAATCCTGAAGACCTATAGTAGGAAGGATAGAGGGAAAGGCAAAATGGTTGTAGATTCGGAGCGAGTCAATTTCCAGTTAGAAAGGGAAGATTCCAGCATCAATGACTAG

Coding sequence (CDS)

ATGATCGAACCGGAGTCAGTCTTTGCTTATCAAACCAACCCAACCACCGGCGACTACGAAGCACTGGTTAGTTGGAAAGGCTTACCTGAAGAGGACGCTACATGGGAGTCAGTTAGAGAGATCTACAAGCAGTTCCCTATGTTCCACCTTAAGGACAAGGTGGTTGTTGGGAGGGGGGGAGTGAGGGGTAATGTTAGACCCCCAATCCTGAAGACCTATAGTAGGAAGGATAGAGGGAAAGGCAAAATGGTTGTAGATTCGGAGCGAGTCAATTTCCAGTTAGAAAGGGAAGATTCCAGCATCAATGACTAG

Protein sequence

MIEPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVRGNVRPPILKTYSRKDRGKGKMVVDSERVNFQLEREDSSIND
Homology
[Close]
BLAST of Moc02g16330 vs. NCBI nr
Match: XP_022156670.1 (probable polygalacturonase [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 5.7e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MIEPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGG 60
          MIEPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGG
Sbjct: 1  MIEPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGG 60

Query: 61 VRGNVRPPILKTYSRKDRGKGKM 84
          VRGNVRPPILKTYSRKDRGKGKM
Sbjct: 61 VRGNVRPPILKTYSRKDRGKGKM 83

[Close]
BLAST of Moc02g16330 vs. NCBI nr
Match: KAA0059566.1 (soluble inorganic pyrophosphatase 1 [Cucumis melo var. makuwa] >TYK14805.1 soluble inorganic pyrophosphatase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3   EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
           +PE V+ Y+ NP T D+EAL+SWKGLP  +ATWE+  ++  QFP FHL+DKV +      
Sbjct: 111 QPEEVYGYRKNPATNDWEALISWKGLPPHEATWENCADMKYQFPKFHLEDKVDLEE---E 170

Query: 63  GNVRPPILKTYSRKDRGK 81
            + RPPIL TY+R+++ K
Sbjct: 171 SDARPPILFTYNRRNKKK 185

[Close]
BLAST of Moc02g16330 vs. NCBI nr
Match: KAA0050511.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.9e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3    EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
            +PE V+ Y+ NP+T ++EAL+SWKGLP  +ATWES  ++  QFP FHL+DKV +      
Sbjct: 1573 QPEEVYGYRKNPSTREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEE---E 1632

Query: 63   GNVRPPILKTYSRKDRGK 81
             + RPPIL TY RK++ K
Sbjct: 1633 SDARPPILFTYHRKNKKK 1647

[Close]
BLAST of Moc02g16330 vs. NCBI nr
Match: TYK24654.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.9e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3   EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
           +PE V+ Y+ NP+T ++EAL+SWKGLP  +ATWES  ++  QFP FHL+DKV +      
Sbjct: 182 QPEEVYGYRKNPSTREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEE---E 241

Query: 63  GNVRPPILKTYSRKDRGK 81
            + RPPIL TY RK++ K
Sbjct: 242 SDARPPILFTYHRKNKKK 256

[Close]
BLAST of Moc02g16330 vs. NCBI nr
Match: KAA0047237.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.9e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3   EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
           +PE V++Y+ NP T ++EAL+SWKGLP  +ATWES  ++  QFP FHL+DKV +      
Sbjct: 256 QPEEVYSYRKNPATREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEE---E 315

Query: 63  GNVRPPILKTYSRKDRGK 81
            + RPPIL TY RK++ K
Sbjct: 316 SDARPPILFTYHRKNKKK 330

[Close]
BLAST of Moc02g16330 vs. ExPASy TrEMBL
Match: A0A6J1DQZ6 (probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111023522 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.7e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MIEPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGG 60
          MIEPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGG
Sbjct: 1  MIEPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGG 60

Query: 61 VRGNVRPPILKTYSRKDRGKGKM 84
          VRGNVRPPILKTYSRKDRGKGKM
Sbjct: 61 VRGNVRPPILKTYSRKDRGKGKM 83

[Close]
BLAST of Moc02g16330 vs. ExPASy TrEMBL
Match: A0A5D3CTH5 (Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00040 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3   EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
           +PE V+ Y+ NP T D+EAL+SWKGLP  +ATWE+  ++  QFP FHL+DKV +      
Sbjct: 111 QPEEVYGYRKNPATNDWEALISWKGLPPHEATWENCADMKYQFPKFHLEDKVDLEE---E 170

Query: 63  GNVRPPILKTYSRKDRGK 81
            + RPPIL TY+R+++ K
Sbjct: 171 SDARPPILFTYNRRNKKK 185

[Close]
BLAST of Moc02g16330 vs. ExPASy TrEMBL
Match: A0A5D3DM31 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002040 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3   EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
           +PE V+ Y+ NP+T ++EAL+SWKGLP  +ATWES  ++  QFP FHL+DKV +      
Sbjct: 182 QPEEVYGYRKNPSTREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEE---E 241

Query: 63  GNVRPPILKTYSRKDRGK 81
            + RPPIL TY RK++ K
Sbjct: 242 SDARPPILFTYHRKNKKK 256

[Close]
BLAST of Moc02g16330 vs. ExPASy TrEMBL
Match: A0A5A7TZ75 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00300 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3   EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
           +PE V++Y+ NP T ++EAL+SWKGLP  +ATWES  ++  QFP FHL+DKV +      
Sbjct: 256 QPEEVYSYRKNPATREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEE---E 315

Query: 63  GNVRPPILKTYSRKDRGK 81
            + RPPIL TY RK++ K
Sbjct: 316 SDARPPILFTYHRKNKKK 330

[Close]
BLAST of Moc02g16330 vs. ExPASy TrEMBL
Match: A0A5D3C5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00350 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 3    EPESVFAYQTNPTTGDYEALVSWKGLPEEDATWESVREIYKQFPMFHLKDKVVVGRGGVR 62
            +PE V+ Y+ NP+T ++EAL+SWKGLP  +ATWES  ++  QFP FHL+DKV +      
Sbjct: 1573 QPEEVYGYRKNPSTREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEE---E 1632

Query: 63   GNVRPPILKTYSRKDRGK 81
             + RPPIL TY RK++ K
Sbjct: 1633 SDARPPILFTYHRKNKKK 1647

The following BLAST results are available for this feature:
BLAST of Moc02g16330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156670.15.7e-41100.00probable polygalacturonase [Momordica charantia][more]
KAA0059566.13.5e-1450.00soluble inorganic pyrophosphatase 1 [Cucumis melo var. makuwa] >TYK14805.1 solub... [more]
KAA0050511.15.9e-1451.28Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK24654.15.9e-1451.28Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047237.15.9e-1451.28Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
BLAST of Moc02g16330 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc02g16330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DQZ62.7e-41100.00probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111023522 PE=3 S... [more]
A0A5D3CTH51.7e-1450.00Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DM312.9e-1451.28Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TZ752.9e-1451.28Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3C5N72.9e-1451.28Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Moc02g16330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.40coord: 2..48
e-value: 3.8E-6
score: 28.5
IPR023780Chromo domainPFAMPF00385Chromocoord: 3..46
e-value: 7.3E-8
score: 32.2
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 2..37
score: 9.408101
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 3..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g16330.1Moc02g16330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0004650 polygalacturonase activity