MS028585 (gene) Bitter gourd (TR) v1

Overview
NameMS028585
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 5
Locationscaffold357: 604881 .. 606468 (+)
RNA-Seq ExpressionMS028585
SyntenyMS028585
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGTGGCCGCCTGCCTGGTGGGGGCGGCTCCTCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCACAGCAGTAGTAAGGGCGTTAAGACCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGTGAATGAATCCCATCCCCTATCAAGTGAAGTGCTTACGCCCCTTTAGAGATAGGGGCGAGCAAAAGAGCTCGTTCTTCTATTTTGAGATCTTTAGATTCGTAAGATCATGATAGAGTCCCCTTTACTTGATATTCAATTATTAAAGCTCCCGCCGCCCTACAACTAGTATAGTATAGCAGAGCTGCCAGCTTCAAAGCTGACCTTCTTATTAGAGAAAGGGGCGCGCTAGGCTAGCGCTAGAATAATATACATATACAAGGTTAGGGGGCTGAAAAGCTGTTGTTTGCTGTCTACTTCGCGAGCCTTCACAGCCCCGTTCTGTAACTTCCCTTCTTTCGTCCGTCCACGAGGCTGTAAAAAGAGAGAAAGGGGCGGCTATCTAGTGGGAGTCGTTTCGGTTGTATGCCACGAGGTCCCTATGGACAAGGGGACAAGTGAATCATCGCTTTTGGGCGCAGGCAGCCCTCTACCATCCATCCCATTGCATTCCATCGTCTCGTATTGCTTTACTAAGCCGTATCAGACCAGATACATCTATTGAGTGAGAGAAAGGGAGAAAACTCTAAATATTCTTCATTTTTCTATTGATAGGGATCCCCATTCATTCCTAGATTCCCGTCACTACGGATTGATTGTCCCTACCTAACTACATGGTAGTGGTCTAGGGAGCGCAATTGCTAGAGCACGGGAGAATTAAGAGTAATGATTTCAGCAAGAGCAGCCGGACGGACTACTATAGTGAGTCTAGTGACTACTAGAGTCGGTCGAGTTGAGTCAAAAGGTATGGTATAGCAGCCTTTCCGAGCGAGCCTCTGGGATCTCCTGTAAACCCCCATGATGTGGTAAAGGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCCNCGGGAGTGGACAGCAAGTTGGAGGACGCTGCAGAACCGCGTGATTGATCCATCTGCGCCATTCCCTAATTGAAGCAAGTTGGAAAGCCTTCAGAGCCTCAGCCCATAAAAGCAGAAAGAAGGAAAAAAAACTGATGAAAGTCAGCCTGGACTCTCGAATCTTTTGCTTCTCGGATAGCGGCGAACAATGCAGCTTGCGTTGCGGGAGATGCCCGCTTCTCGCCCGAAAGAACCGCTCACTAGCTAGCCGGACTAGTGGGGGCCATTCGTTTGATGAGAAAGAAAAATGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAATAACACTCATTTAGCTCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTCTATTGGCGGCTTCAAACTCTTTCCTAGTCTAGTAGTGGTTCGGATCTTGACCGGGTCTGAGCTTCCCAAGCTCTATGCTGTTGGGGAACTCCGCTTCAGACCTATGATGGTGACCACATCTGCTGGCATGTGA

mRNA sequence

ATGACCCGTGGCCGCCTGCCTGGTGGGGGCGGCTCCTCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCACAGCAGTAGTAAGGGCGTTAAGACCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCCNCGGGAGTGGACAGCAAGTTGGAGGACGCTGCAGAACCGCGTGATTGATCCATCTGCGCCATTCCCTAATTGAAGCAAGTTGGAAAGCCTTCAGAGCCTCAGCCCATAAAAGCAGAAAGAAGGAAAAAAAACTGATGAAAGTCAGCCTGGACTCTCGAATCTTTTGCTTCTCGGATAGCGGCGAACAATGCAGCTTGCGTTGCGGGAGATGCCCGCTTCTCGCCCGAAAGAACCGCTCACTAGCTAGCCGGACTAGTGGGGGCCATTCGTTTGATGAGAAAGAAAAATGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAATAACACTCATTTAGCTCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTCTATTGGCGGCTTCAAACTCTTTCCTAGTCTAGTAGTGGTTCGGATCTTGACCGGGTCTGAGCTTCCCAAGCTCTATGCTGTTGGGGAACTCCGCTTCAGACCTATGATGGTGACCACATCTGCTGGCATGTGA

Coding sequence (CDS)

ATGACCCGTGGCCGCCTGCCTGGTGGGGGCGGCTCCTCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCACAGCAGTAGTAAGGGCGTTAAGACCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCCNCGGGAGTGGACAGCAAGTTGGAGGACGCTGCAGAACCGCGTGATTGATCCATCTGCGCCATTCCCTAATTGAAGCAAGTTGGAAAGCCTTCAGAGCCTCAGCCCATAAAAGCAGAAAGAAGGAAAAAAAACTGATGAAAGTCAGCCTGGACTCTCGAATCTTTTGCTTCTCGGATAGCGGCGAACAATGCAGCTTGCGTTGCGGGAGATGCCCGCTTCTCGCCCGAAAGAACCGCTCACTAGCTAGCCGGACTAGTGGGGGCCATTCGTTTGATGAGAAAGAAAAATGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAATAACACTCATTTAGCTCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTCTATTGGCGGCTTCAAACTCTTTCCTAGTCTAGTAGTGGTTCGGATCTTGACCGGGTCTGAGCTTCCCAAGCTCTATGCTGTTGGGGAACTCCGCTTCAGACCTATGATGGTGACCACATCTGCTGGCATGTGA

Protein sequence

MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNARRILGEAVSGDSPAESRMRGDLHVXGSGQQVGGRCRTAULIHLRHSLIEASWKAFRASAHKSRKKEKKLMKVSLDSRIFCFSDSGEQCSLRCGRCPLLARKNRSLASRTSGGHSFDEKEKUISKIRVAEAEAATFEITLIULLHAYYNULFRFSIGGFKLFPSLVVVRILTGSELPKLYAVGELRFRPMMVTTSAGM
Homology
[Close]
BLAST of MS028585 vs. NCBI nr
Match: KAF9626616.1 (hypothetical protein IFM89_036477 [Coptis chinensis])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-16
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNARRI 52
          MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA R+
Sbjct: 1  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASKNATRV 51

[Close]
BLAST of MS028585 vs. NCBI nr
Match: TKS02723.1 (NADH dehydrogenase subunit 5 [Populus alba])

HSP 1 Score: 95.1 bits (235), Expect = 8.8e-16
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSAS NA
Sbjct: 170 MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASRNA 217

[Close]
BLAST of MS028585 vs. NCBI nr
Match: KAG6383881.1 (hypothetical protein SASPL_156294 [Salvia splendens] >KAG6384644.1 hypothetical protein SASPL_155487 [Salvia splendens])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Sbjct: 96  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASKNA 143

[Close]
BLAST of MS028585 vs. NCBI nr
Match: CAD1835902.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-14
Identity = 67/165 (40.61%), Postives = 69/165 (41.82%), Query Frame = 0 

Query: 1   MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA--------- 60
           M RGRLP   GGGGSSVVGKRETRLYEPEERLHS  +GVKTGAFCSAS NA         
Sbjct: 1   MNRGRLPALVGGGGSSVVGKRETRLYEPEERLHSFRRGVKTGAFCSASRNAIKRKRERGG 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  YNAGVVAVVCHEVPIDKGTSESSLLGAGSPLPSIPLHSSRRVLYRLRPDTTMERKDFLEK 120

[Close]
BLAST of MS028585 vs. NCBI nr
Match: PPS15510.1 (hypothetical protein GOBAR_AA05069 [Gossypium barbadense])

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-13
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           +TRGRLPGGGGSSVVGKRETRLYEP+ERLHSSSKG+K  AFCSAS NA
Sbjct: 102 ITRGRLPGGGGSSVVGKRETRLYEPKERLHSSSKGIKARAFCSASRNA 149

[Close]
BLAST of MS028585 vs. ExPASy TrEMBL
Match: A0A4U5PYN4 (NADH dehydrogenase subunit 5 OS=Populus alba OX=43335 GN=D5086_0000161240 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-16
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSAS NA
Sbjct: 170 MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASRNA 217

[Close]
BLAST of MS028585 vs. ExPASy TrEMBL
Match: A0A4D8YAI0 (NADH-ubiquinone oxidoreductase chain 5 OS=Salvia splendens OX=180675 GN=ND5 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.3e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Sbjct: 707 MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASKNA 754

[Close]
BLAST of MS028585 vs. ExPASy TrEMBL
Match: A0A6V7PYE1 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS19113 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 67/165 (40.61%), Postives = 69/165 (41.82%), Query Frame = 0 

Query: 1   MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA--------- 60
           M RGRLP   GGGGSSVVGKRETRLYEPEERLHS  +GVKTGAFCSAS NA         
Sbjct: 1   MNRGRLPALVGGGGSSVVGKRETRLYEPEERLHSFRRGVKTGAFCSASRNAIKRKRERGG 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  YNAGVVAVVCHEVPIDKGTSESSLLGAGSPLPSIPLHSSRRVLYRLRPDTTMERKDFLEK 120

[Close]
BLAST of MS028585 vs. ExPASy TrEMBL
Match: A0A2P5YIU1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05069 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           +TRGRLPGGGGSSVVGKRETRLYEP+ERLHSSSKG+K  AFCSAS NA
Sbjct: 102 ITRGRLPGGGGSSVVGKRETRLYEPKERLHSSSKGIKARAFCSASRNA 149

[Close]
BLAST of MS028585 vs. ExPASy TrEMBL
Match: A0A7J0FM97 (NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g0006900 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 7   PGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           PGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Sbjct: 167 PGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASRNA 208

The following BLAST results are available for this feature:
BLAST of MS028585 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF9626616.12.3e-1692.16hypothetical protein IFM89_036477 [Coptis chinensis][more]
TKS02723.18.8e-1697.92NADH dehydrogenase subunit 5 [Populus alba][more]
KAG6383881.11.5e-1595.83hypothetical protein SASPL_156294 [Salvia splendens] >KAG6384644.1 hypothetical ... [more]
CAD1835902.16.3e-1440.61unnamed protein product [Ananas comosus var. bracteatus][more]
PPS15510.13.1e-1387.50hypothetical protein GOBAR_AA05069 [Gossypium barbadense][more]
BLAST of MS028585 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS028585 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4U5PYN44.3e-1697.92NADH dehydrogenase subunit 5 OS=Populus alba OX=43335 GN=D5086_0000161240 PE=4 S... [more]
A0A4D8YAI07.3e-1695.83NADH-ubiquinone oxidoreductase chain 5 OS=Salvia splendens OX=180675 GN=ND5 PE=4... [more]
A0A6V7PYE13.0e-1440.61Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS... [more]
A0A2P5YIU11.5e-1387.50Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05069 PE=4 SV... [more]
A0A7J0FM972.9e-1295.24NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g000... [more]
BLAST of MS028585 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028585.1MS028585.1mRNA