MS028517 (gene) Bitter gourd (TR) v1

Overview
NameMS028517
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold29: 163024 .. 165069 (-)
RNA-Seq ExpressionMS028517
SyntenyMS028517
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAACCGCTGATTCCACAGTTCCTTCATCAGATTTGGGTGCGTTTGAAAGAGCTGCTTCCCCTGCTGATATGATAGGTGACTCAACGGATACTACTAAAAAATTTCCCATAGTTTCTCATGGAAGGAAATGGGATTTTTGAGAAAAGGGGTTGGGAACCATCGAAAGACTAGCAACCTGACAGTCCTAAGCAACCTGGAACCAACAACGTTACATATACCATACTGCTATAGAAGACATGAATACCAGTTAGACTACGGGACGCGTACACCCGCAATTGGTGAGCAACTTACTGCCCTTTAAGTCAAGAGCTAGTAGTACTATCAGCATCAGCAAAGGATATCGTAATTATGGCGAATACGTTTTTCTTGCTTGCCACATACCCGGAATACGAACTAAGCAAGAACATGTGAACTAAGCCCAGGGGATGATCGAGGATTGAAGGTCTGGAATTGTGGACACAGGGAGGGCGGAGGCATACCAGGCTTAATAACGACTAAAGTTGGACGACCGGGAAATAGCACTGAACAAGCAAGGGCTAAAAGCTTCTTTTACCCAGTCTTCTCCCATAGGCTCAGAAGAGGGTCAATACGATCCCTTTAAGATAAAAAAAAAANCTATCAGAGCCTTTTAAAGAGGTACAGGGGTGTGGGTGTACTTTAAGGGTGATTTTTACTTCGAAAGCCATGAGCCCCATTTACGAAAGCCTAAGCCTACGGAACAAACTTGCTCCTTTTGATTAACTCGTCGCTACTTCTGACCCCTCGTAGTACCCTCTCTTTCTCAATCTGACTCTTCCATGTACTCGACACGGATTCCCAAGCTTCGGGAGGAGAAGGAGGATCTTACAACTACATCATTATTTATTACAACATCTTACAACACAACATATTAAAATGAGAATGACAGAAGCCCGCTAAACAAGCACTGATTGGTAAATAAGCGCTGAAGCTGCTAAAAGCACAAAAATAGGTAAAGGAATGGAAGCACATCTTGCACCTTCTATGATCCATTCAACCTGCCTTCAAGATGAGAGATAGGCCTTTAGCAAGGGGATATCGCACGGAAAGCCGGATTAGGTCTTATCATCTTCAACTGATTTTACAGGCCTTAGTCCCTTAAGGAGATTACTTTAACACAGCCTGAGGCTTAAGAAAAGATGGCCAACGTTGTGACATCTTAGCCAGAGAAGAGCAACAGGAGCTATATTCAAGGAAGTTATGGACTGGAATCAGAGATTGGATGGACATCCGAAAAAAAAAAAAAAAAGAGGAAGCAAACAAGGCTAGCTCACGAAAGAAAGCCTTGCAACTACGCTATATATTGATATTGCAACTGCGCTAATAAGGGCACATCCGCTTTCTCTGTATGTGGATTTTGGAGTCGCACTGATCGACAGGAGGAGCTCAAATTAGTAAACGGAAAAGAAGATGCAAAAGCTTTCGCACTTACTCGCATACACTCTTTTTATCAGTATTTGGTACTTGTACTCTATGTCAGTCTCATTAGAAAATAATAGAGCTCAGCTGGACTAAGCGAGGCTGCCATATCCGAGACCATTAGCATTAGTTCCCCTCTCACCAAAGCTTCCGAACTTGCCAAGAAGTGGCCTATTCCTACAGTACTGGTCTCTATCAACTAACTCAAGCACTAAAGAGAGGTGGGGCAGGACATCGATAGACAATAGACCAAGGAGCGAAAGCCACTCAGTTGCTTGCTAAATCGAAGAGAGCAGAAGGCACCTCGCCTAACATTATAGGAGAAGGGGCTGAAACCACTCAAATCTTCTTTGTGAAATTGAAGAAGAAATGGGCGGGCAGCTTAGACTCTTTCCCGAAGAGAGCTCCAACCAATAGATGAGATTAAAGACGCTAACATAACAGGGGCTGGAGACATATCTTTATTTAAGAACCAAGAACGGGATATTCGCATTAGCGGAAGGGAGGAGAGCGAAGAGATGAGCACTTTTCAAGCAGCTTTCCTTAACGAAGTCATCTATGTGACCAATGCACGCTTCAAAGAAAGCAGGGATGCTCGCTAG

mRNA sequence

ATGAAAGAAACCGCTGATTCCACAGTTCCTTCATCAGATTTGGGTGCGTTTGAAAGAGCTGCTTCCCCTGCTGATATGATAGGGGCTGGAGACATATCTTTATTTAAGAACCAAGAACGGGATATTCGCATTAGCGGAAGGGAGGAGAGCGAAGAGATGAGCACTTTTCAAGCAGCTTTCCTTAACGAAGTCATCTATGTGACCAATGCACGCTTCAAAGAAAGCAGGGATGCTCGCTAG

Coding sequence (CDS)

ATGAAAGAAACCGCTGATTCCACAGTTCCTTCATCAGATTTGGGTGCGTTTGAAAGAGCTGCTTCCCCTGCTGATATGATAGGGGCTGGAGACATATCTTTATTTAAGAACCAAGAACGGGATATTCGCATTAGCGGAAGGGAGGAGAGCGAAGAGATGAGCACTTTTCAAGCAGCTTTCCTTAACGAAGTCATCTATGTGACCAATGCACGCTTCAAAGAAAGCAGGGATGCTCGCTAG

Protein sequence

MKETADSTVPSSDLGAFERAASPADMIGAGDISLFKNQERDIRISGREESEEMSTFQAAFLNEVIYVTNARFKESRDAR
Homology
[Close]
BLAST of MS028517 vs. NCBI nr
Match: XP_022138627.1 (uncharacterized protein LOC111009742 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 24  ADMIGAGDISLFKNQERDIRISGREESEEMSTFQAAFLNEVIYVTNARFKESRDAR 80
           A++ GAGDISLFKNQERDIRISGREESEEM TFQAAFLNEVIYVTNARFKESRDAR
Sbjct: 87  ANITGAGDISLFKNQERDIRISGREESEEMXTFQAAFLNEVIYVTNARFKESRDAR 142

[Close]
BLAST of MS028517 vs. ExPASy TrEMBL
Match: A0A6J1CBN4 (uncharacterized protein LOC111009742 OS=Momordica charantia OX=3673 GN=LOC111009742 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 24  ADMIGAGDISLFKNQERDIRISGREESEEMSTFQAAFLNEVIYVTNARFKESRDAR 80
           A++ GAGDISLFKNQERDIRISGREESEEM TFQAAFLNEVIYVTNARFKESRDAR
Sbjct: 87  ANITGAGDISLFKNQERDIRISGREESEEMXTFQAAFLNEVIYVTNARFKESRDAR 142

The following BLAST results are available for this feature:
BLAST of MS028517 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138627.11.0e-1892.86uncharacterized protein LOC111009742 [Momordica charantia][more]
BLAST of MS028517 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS028517 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CBN45.0e-1992.86uncharacterized protein LOC111009742 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
BLAST of MS028517 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028517.1MS028517.1mRNA