MS028470 (gene) Bitter gourd (TR) v1

Overview
NameMS028470
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold41: 730775 .. 732066 (-)
RNA-Seq ExpressionMS028470
SyntenyMS028470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGGGACATTCCTTCCTTTATCAGACTCCAGCAGCCGACCTATCAGGTCGGCACGAATGGTCTTGTTTGGACAGGTCGTCCCCTCACGGTTAGTCTCCCAACATTGGCTCCCTCCCAGGTCGGGTAGCTCGCTTCCCACCTGAGAGTTAAAGGAAATGGACGACTTGAGTGCCTAAATGGATGAGTGGGCTTCAATGACGTGGGCCAGTCTCCTGTCCCGATAGGTGCATTTATTAGCCATCGGGGATGTCACTCGTCGGGTGCGGCCTCCAATGCGCTCTTGGCAATTAATCGTCACCCTTAGGCGCGATCTAGGCCGTTGGACATGGGAGACGTGTAGGGTTGGGATCGATCCCTGCGTAGTATATAAAAGCGTGAGGGCTTCCCCTCATTTCACGCTTTCTAGATCACCATTGCTCTCGCGCCGAGGTCAGTTGCTCACTCCCTTTCTTTGTAAATTCTTGGTAGGTCGTAGCCATGTCTATTAAATCCAGCGATAGCTTAGAGTCACCGGAGAATAGCTCTAACGGGGTTTTTAGGTCTCCCTTAGGGGGTTCTCCCAGGGACAGGTCTCCCGACACTAGTTGTTCTGGGGACATGTCGGCCTCTACTAGGTCATCGGGCAGCGGGTCGGCCGTGGCGTCTCCCTCTGGTAGTGAGTCGCCTCTTGCAACCGACCTAAGAGGAGAGGGGGGCGACGCCGCCCATGGTTTGGAGATCCAACCTTATGTCCCTAGAGCTGTTCCCTCTGAGAAGTACGAGGGAAGCCCTTCCGAGCTAGCCGATGGGACCCTTGCTTTTATTAAGGATAAGTATAAGGTTCCAGCATCGGTTGGGATGAGATTCTCGATGTGCGATGAGACTATAGAGAACCCTACAGCCAGGCATGTAGCCTTTTATGAGAAAATGTTTAAGTTCGGAGTCAGGTTTCCCCTCCATCCATCCACTCAAGAGTTTCTCGTTGAGGTGAACCTCGCCCCACCCAGCTTGCTTCTAATGGCTGGGGCATCTTCCTTGGATGTTGGGTGCTGTGGTGGGGCTCGGGGTTGACACAGTAGATGCAGACTATCTAACCCCCGAGCAACTCCTTTCGCTTTTCGCCATGAAGAACTTGCCCAAGAATCCTGGTCGGTTTTATTTGACAGCTCGACAATGAAGGGATCAAATCCCAAGCGAAAGCGTTTTATCGCTTGTGATTCAATTTGGTTTTAGAATAGGAACGATACTGGTTCTTATAAAAATATAACAATTCTATTTAAAACCGAGGTTAAGCCTCACGGGGAATAA

mRNA sequence

ATGTCGAGGGACATTCCTTCCTTTATCAGACTCCAGCAGCCGACCTATCAGGTCGGCACGAATGGTCTTGTTTGGACAGGTCGTCCCCTCACGGTCGTAGCCATGTCTATTAAATCCAGCGATAGCTTAGAGTCACCGGAGAATAGCTCTAACGGGGTTTTTAGGTCTCCCTTAGGGGGTTCTCCCAGGGACAGGTCTCCCGACACTAGTTGTTCTGGGGACATGTCGGCCTCTACTAGGTCATCGGGCAGCGGGTCGGCCGTGGCGTCTCCCTCTGGTAGTGAGTCGCCTCTTGCAACCGACCTAAGAGGAGAGGGGGGCGACGCCGCCCATGGTTTGGAGATCCAACCTTATGTCCCTAGAGCTGTTCCCTCTGAGAAGTACGAGGGAAGCCCTTCCGAGCTAGCCGATGGGACCCTTGCTTTTATTAAGGATAAGTATAAGGTTCCAGCATCGGTTGGGATGAGATTCTCGATGTGCGATGAGACTATAGAGAACCCTACAGCCAGGCATGTAGCCTTTTATGAGAAAATGTTTAAGTTCGGAGTCAGGTTTCCCCTCCATCCATCCACTCAAGAGTTTCTCGTTGAGGTGAACCTCGCCCCACCCAGCTTGCTTCTAATGGCTGGGGCATCTTCCTTGGATGTTGGGTGCTGTGGTGGGGCTCGGGGTTGACACAGTAGATGCAGACTATCTAACCCCCGAGCAACTCCTTTCGCTTTTCGCCATGAAGAACTTGCCCAAGAATCCTGGTCGGTTTTATTTGACAGCTCGACAATGAAGGGATCAAATCCCAAGCGAAAGCGTTTTATCGCTTGTGATTCAATTTGGTTTTAGAATAGGAACGATACTGGTTCTTATAAAAATATAACAATTCTATTTAAAACCGAGGTTAAGCCTCACGGGGAATAA

Coding sequence (CDS)

ATGTCGAGGGACATTCCTTCCTTTATCAGACTCCAGCAGCCGACCTATCAGGTCGGCACGAATGGTCTTGTTTGGACAGGTCGTCCCCTCACGGTCGTAGCCATGTCTATTAAATCCAGCGATAGCTTAGAGTCACCGGAGAATAGCTCTAACGGGGTTTTTAGGTCTCCCTTAGGGGGTTCTCCCAGGGACAGGTCTCCCGACACTAGTTGTTCTGGGGACATGTCGGCCTCTACTAGGTCATCGGGCAGCGGGTCGGCCGTGGCGTCTCCCTCTGGTAGTGAGTCGCCTCTTGCAACCGACCTAAGAGGAGAGGGGGGCGACGCCGCCCATGGTTTGGAGATCCAACCTTATGTCCCTAGAGCTGTTCCCTCTGAGAAGTACGAGGGAAGCCCTTCCGAGCTAGCCGATGGGACCCTTGCTTTTATTAAGGATAAGTATAAGGTTCCAGCATCGGTTGGGATGAGATTCTCGATGTGCGATGAGACTATAGAGAACCCTACAGCCAGGCATGTAGCCTTTTATGAGAAAATGTTTAAGTTCGGAGTCAGGTTTCCCCTCCATCCATCCACTCAAGAGTTTCTCGTTGAGGTGAACCTCGCCCCACCCAGCTTGCTTCTAATGGCTGGGGCATCTTCCTTGGATGTTGGGTGCTGTGGTGGGGCTCGGGGTTGACACAGTAGATGCAGACTATCTAACCCCCGAGCAACTCCTTTCGCTTTTCGCCATGAAGAACTTGCCCAAGAATCCTGGTCGGTTTTATTTGACAGCTCGACAATGAAGGGATCAAATCCCAAGCGAAAGCGTTTTATCGCTTGTGATTCAATTTGGTTTTAGAATAGGAACGATACTGGTTCTTATAAAAATATAACAATTCTATTTAAAACCGAGGTTAAGCCTCACGGGGAATAA

Protein sequence

MSRDIPSFIRLQQPTYQVGTNGLVWTGRPLTVVAMSIKSSDSLESPENSSNGVFRSPLGGSPRDRSPDTSCSGDMSASTRSSGSGSAVASPSGSESPLATDLRGEGGDAAHGLEIQPYVPRAVPSEKYEGSPSELADGTLAFIKDKYKVPASVGMRFSMCDETIENPTARHVAFYEKMFKFGVRFPLHPSTQEFLVEVNLAPPSLLLMAGASSLDVGCCGGARGUHSRCRLSNPRATPFAFRHEELAQESWSVLFDSSTMKGSNPKRKRFIACDSIWFUNRNDTGSYKNITILFKTEVKPHGE
Homology
[Close]
BLAST of MS028470 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-04
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 132 PSELADGTLAFIKDKYKVPASVGMRFSMCDETIENPTARHVAFYEKMFKFGVRFPLHPST 191
           PS + +  L  ++  + +P ++ +R     E  +NP    V  Y KMF++G+R PLHP  
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 192 QEFLVEVNLAP 203
           QEFL    LAP
Sbjct: 108 QEFLFRTGLAP 118

[Close]
BLAST of MS028470 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 132 PSELADGTLAFIKDKYKVPASVGMRFSMCDETIENPTARHVAFYEKMFKFGVRFPLHPST 191
           PS + +  L  ++  + +P ++ +R     E  +NP    V  Y KMF++G+R PLHP  
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 192 QEFLVEVNLAP 203
           QEFL    LAP
Sbjct: 108 QEFLFRTGLAP 118

The following BLAST results are available for this feature:
BLAST of MS028470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159063.12.5e-0436.62uncharacterized protein LOC111025502, partial [Momordica charantia][more]
BLAST of MS028470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS028470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXS51.2e-0436.62uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of MS028470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028470.1MS028470.1mRNA