MS027336 (gene) Bitter gourd (TR) v1

Overview


Name	MS027336
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	HEAT repeat-containing protein 6 isoform X1
Location	scaffold373: 4335492 .. 4335868 (-)
RNA-Seq Expression	MS027336
Synteny	MS027336

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACACCGTCATCGTCATCAGCGTCTTCAGTAAGGTCATGGAGGACGGCGTTTCTGACTCTCCGAGACGAATCGATCTCGTCCTCAACCTCAATTTCCGAACTTCTCCACAACACCATCCTCTCCCACTCCGATTCCTTAATCGCTGCCGCTCACTACCTTCCTCCTCCCGAAGTACGATTTCCCCCTTTTCTATGTCTGAGTCGATGTTCTTCAAAATGCACGATTATCACTTTCTTGTTCCTTCTTTGTGTGAGTAGGTATCATCAGATCTGCTGTTTCTCCTTGAAGTGGCTACTCCTGCTTCAAACACCGCGCATGACATTGCCCCCGTCTTCGCAGATATCATACATCTGGTGCAAATTACATTTTGA

mRNA sequence

ATGGCGACACCGTCATCGTCATCAGCGTCTTCAGTAAGGTCATGGAGGACGGCGTTTCTGACTCTCCGAGACGAATCGATCTCGTCCTCAACCTCAATTTCCGAACTTCTCCACAACACCATCCTCTCCCACTCCGATTCCTTAATCGCTGCCGCTCACTACCTTCCTCCTCCCGAAGTATCATCAGATCTGCTGTTTCTCCTTGAAGTGGCTACTCCTGCTTCAAACACCGCGCATGACATTGCCCCCGTCTTCGCAGATATCATACATCTGGTGCAAATTACATTTTGA

Coding sequence (CDS)

ATGGCGACACCGTCATCGTCATCAGCGTCTTCAGTAAGGTCATGGAGGACGGCGTTTCTGACTCTCCGAGACGAATCGATCTCGTCCTCAACCTCAATTTCCGAACTTCTCCACAACACCATCCTCTCCCACTCCGATTCCTTAATCGCTGCCGCTCACTACCTTCCTCCTCCCGAAGTATCATCAGATCTGCTGTTTCTCCTTGAAGTGGCTACTCCTGCTTCAAACACCGCGCATGACATTGCCCCCGTCTTCGCAGATATCATACATCTGGTGCAAATTACATTTTGA

Protein sequence

MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEVSSDLLFLLEVATPASNTAHDIAPVFADIIHLVQITF

Homology

[Close]

BLAST of MS027336 vs. NCBI nr
Match: XP_022159609.1 (HEAT repeat-containing protein 6 isoform X2 [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MATPSSSSASSVRSWRTAFLTLRDES+SSSTSISELLHNTILSHSDSLIAAAHYLPPPEV
Sbjct: 1  MATPSSSSASSVRSWRTAFLTLRDESMSSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS TAHDIAPVFADIIHL+
Sbjct: 61 SSDLLFLLEVATPASKTAHDIAPVFADIIHLI 92

[Close]

BLAST of MS027336 vs. NCBI nr
Match: XP_022159610.1 (HEAT repeat-containing protein 6 isoform X3 [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MATPSSSSASSVRSWRTAFLTLRDES+SSSTSISELLHNTILSHSDSLIAAAHYLPPPEV
Sbjct: 1  MATPSSSSASSVRSWRTAFLTLRDESMSSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS TAHDIAPVFADIIHL+
Sbjct: 61 SSDLLFLLEVATPASKTAHDIAPVFADIIHLI 92

[Close]

BLAST of MS027336 vs. NCBI nr
Match: XP_022159607.1 (HEAT repeat-containing protein 6 isoform X1 [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MATPSSSSASSVRSWRTAFLTLRDES+SSSTSISELLHNTILSHSDSLIAAAHYLPPPEV
Sbjct: 1  MATPSSSSASSVRSWRTAFLTLRDESMSSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS TAHDIAPVFADIIHL+
Sbjct: 61 SSDLLFLLEVATPASKTAHDIAPVFADIIHLI 92

[Close]

BLAST of MS027336 vs. NCBI nr
Match: XP_022957979.1 (HEAT repeat-containing protein 6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 7.6e-32
Identity = 78/92 (84.78%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MA PSSSSASSVRSWRTAFLTLRDESISSSTSIS+LL++TI SHSD LIAAAHYLPPPEV
Sbjct: 1  MAAPSSSSASSVRSWRTAFLTLRDESISSSTSISQLLYDTIFSHSDCLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS++ HD+A +F+DIIHL+
Sbjct: 61 SSDLLFLLEVATPASDSVHDVALLFSDIIHLI 92

[Close]

BLAST of MS027336 vs. NCBI nr
Match: XP_022957982.1 (uncharacterized protein LOC111459349 isoform X4 [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 7.6e-32
Identity = 78/92 (84.78%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MA PSSSSASSVRSWRTAFLTLRDESISSSTSIS+LL++TI SHSD LIAAAHYLPPPEV
Sbjct: 1  MAAPSSSSASSVRSWRTAFLTLRDESISSSTSISQLLYDTIFSHSDCLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS++ HD+A +F+DIIHL+
Sbjct: 61 SSDLLFLLEVATPASDSVHDVALLFSDIIHLI 92

[Close]

BLAST of MS027336 vs. ExPASy TrEMBL
Match: A0A6J1E0A2 (HEAT repeat-containing protein 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025972 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.7e-38
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MATPSSSSASSVRSWRTAFLTLRDES+SSSTSISELLHNTILSHSDSLIAAAHYLPPPEV
Sbjct: 1  MATPSSSSASSVRSWRTAFLTLRDESMSSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS TAHDIAPVFADIIHL+
Sbjct: 61 SSDLLFLLEVATPASKTAHDIAPVFADIIHLI 92

[Close]

BLAST of MS027336 vs. ExPASy TrEMBL
Match: A0A6J1DZ80 (HEAT repeat-containing protein 6 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111025972 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.7e-38
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MATPSSSSASSVRSWRTAFLTLRDES+SSSTSISELLHNTILSHSDSLIAAAHYLPPPEV
Sbjct: 1  MATPSSSSASSVRSWRTAFLTLRDESMSSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS TAHDIAPVFADIIHL+
Sbjct: 61 SSDLLFLLEVATPASKTAHDIAPVFADIIHLI 92

[Close]

BLAST of MS027336 vs. ExPASy TrEMBL
Match: A0A6J1E2V4 (HEAT repeat-containing protein 6 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025972 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.7e-38
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MATPSSSSASSVRSWRTAFLTLRDES+SSSTSISELLHNTILSHSDSLIAAAHYLPPPEV
Sbjct: 1  MATPSSSSASSVRSWRTAFLTLRDESMSSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS TAHDIAPVFADIIHL+
Sbjct: 61 SSDLLFLLEVATPASKTAHDIAPVFADIIHLI 92

[Close]

BLAST of MS027336 vs. ExPASy TrEMBL
Match: A0A6J1H262 (HEAT repeat-containing protein 6 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459349 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.7e-32
Identity = 78/92 (84.78%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MA PSSSSASSVRSWRTAFLTLRDESISSSTSIS+LL++TI SHSD LIAAAHYLPPPEV
Sbjct: 1  MAAPSSSSASSVRSWRTAFLTLRDESISSSTSISQLLYDTIFSHSDCLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS++ HD+A +F+DIIHL+
Sbjct: 61 SSDLLFLLEVATPASDSVHDVALLFSDIIHLI 92

[Close]

BLAST of MS027336 vs. ExPASy TrEMBL
Match: A0A6J1H3P0 (HEAT repeat-containing protein 6 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459349 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.7e-32
Identity = 78/92 (84.78%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MATPSSSSASSVRSWRTAFLTLRDESISSSTSISELLHNTILSHSDSLIAAAHYLPPPEV 60
          MA PSSSSASSVRSWRTAFLTLRDESISSSTSIS+LL++TI SHSD LIAAAHYLPPPEV
Sbjct: 1  MAAPSSSSASSVRSWRTAFLTLRDESISSSTSISQLLYDTIFSHSDCLIAAAHYLPPPEV 60

Query: 61 SSDLLFLLEVATPASNTAHDIAPVFADIIHLV 93
          SSDLLFLLEVATPAS++ HD+A +F+DIIHL+
Sbjct: 61 SSDLLFLLEVATPASDSVHDVALLFSDIIHLI 92

[Close]

BLAST of MS027336 vs. TAIR 10
Match: AT4G38120.1 (ARM repeat superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 9.1e-07
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 5  SSSSASSVRSWRTAFLTLRDE-SISSSTSISELLHNTILSHSDSLIAAAHYLPPPEVSSD 64
          +++++SSV  WRTAFL+LRDE S +    +  LL + + S S SLI+A  +LP  E++SD
Sbjct: 3  TAAASSSVGRWRTAFLSLRDEISTTPPPPVPLLLEDLLFSQSHSLISAVSHLPLHELTSD 62

Query: 65 LLFLLEVATPA 75
           LFLL++ + A
Sbjct: 63 CLFLLDLVSKA 73

[Close]

BLAST of MS027336 vs. TAIR 10
Match: AT4G38120.2 (ARM repeat superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 9.1e-07
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 5  SSSSASSVRSWRTAFLTLRDE-SISSSTSISELLHNTILSHSDSLIAAAHYLPPPEVSSD 64
          +++++SSV  WRTAFL+LRDE S +    +  LL + + S S SLI+A  +LP  E++SD
Sbjct: 3  TAAASSSVGRWRTAFLSLRDEISTTPPPPVPLLLEDLLFSQSHSLISAVSHLPLHELTSD 62

Query: 65 LLFLLEVATPA 75
           LFLL++ + A
Sbjct: 63 CLFLLDLVSKA 73

The following BLAST results are available for this feature:

BLAST of MS027336 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159609.1	1.6e-37	96.74	HEAT repeat-containing protein 6 isoform X2 [Momordica charantia]	[more]
XP_022159610.1	1.6e-37	96.74	HEAT repeat-containing protein 6 isoform X3 [Momordica charantia]	[more]
XP_022159607.1	1.6e-37	96.74	HEAT repeat-containing protein 6 isoform X1 [Momordica charantia]	[more]
XP_022957979.1	7.6e-32	84.78	HEAT repeat-containing protein 6 isoform X1 [Cucurbita moschata]	[more]
XP_022957982.1	7.6e-32	84.78	uncharacterized protein LOC111459349 isoform X4 [Cucurbita moschata]	[more]

BLAST of MS027336 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS027336 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0A2	7.7e-38	96.74	HEAT repeat-containing protein 6 isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DZ80	7.7e-38	96.74	HEAT repeat-containing protein 6 isoform X3 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1E2V4	7.7e-38	96.74	HEAT repeat-containing protein 6 isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1H262	3.7e-32	84.78	HEAT repeat-containing protein 6 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1H3P0	3.7e-32	84.78	HEAT repeat-containing protein 6 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of MS027336 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38120.1	9.1e-07	45.07	ARM repeat superfamily protein	[more]
AT4G38120.2	9.1e-07	45.07	ARM repeat superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS027336.1	MS027336.1	mRNA