MS026636 (gene) Bitter gourd (TR) v1

Overview
NameMS026636
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold493: 51999 .. 52430 (+)
RNA-Seq ExpressionMS026636
SyntenyMS026636
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGCCGATTTGCTCCCACAGGAGAGCATCCCAAGGCGAATTTGAATAACATCGACCATGGACAGCATGAGGAACAAGCATCCCATCACAGATCCAACGGCGGAGGCGAGCATCCCGAATCTGAGGACCTTCAGATTAATGTGTGCCCTAAAGGCCTCGTCCACATCCCTGCTATTGAGGAGATTAATGGCGAGCTTGAGGCCCTGGGCGACGAGGGAGGAGAAGAGGAAGAAGCTGAAGGAGACGACCTCGAAGACGAGGAGCTTGCGGGCGACGTCGACGCCGGCGTCGCAGGCGGAGGGATTCTCGAGGCTGTGCTGGCCGGGGGTGGTCAGGGAAAGGCCGACGAAGACGGCGATGGTGAAGAGGGAGTTCACGTTGACGAGGCCGTCGAGGGCCGTAACGTGGACGCTGGTGGTGGACGATGA

mRNA sequence

ATGAACAGCCGATTTGCTCCCACAGGAGAGCATCCCAAGGCGAATTTGAATAACATCGACCATGGACAGCATGAGGAACAAGCATCCCATCACAGATCCAACGGCGGAGGCGAGCATCCCGAATCTGAGGACCTTCAGATTAATGTGTGCCCTAAAGGCCTCGTCCACATCCCTGCTATTGAGGAGATTAATGGCGAGCTTGAGGCCCTGGGCGACGAGGGAGGAGAAGAGGAAGAAGCTGAAGGAGACGACCTCGAAGACGAGGAGCTTGCGGGCGACGTCGACGCCGGCGTCGCAGGCGGAGGGATTCTCGAGGCTGTGCTGGCCGGGGGTGGTCAGGGAAAGGCCGACGAAGACGGCGATGGTGAAGAGGGAGTTCACGTTGACGAGGCCGTCGAGGGCCGTAACGTGGACGCTGGTGGTGGACGATGA

Coding sequence (CDS)

ATGAACAGCCGATTTGCTCCCACAGGAGAGCATCCCAAGGCGAATTTGAATAACATCGACCATGGACAGCATGAGGAACAAGCATCCCATCACAGATCCAACGGCGGAGGCGAGCATCCCGAATCTGAGGACCTTCAGATTAATGTGTGCCCTAAAGGCCTCGTCCACATCCCTGCTATTGAGGAGATTAATGGCGAGCTTGAGGCCCTGGGCGACGAGGGAGGAGAAGAGGAAGAAGCTGAAGGAGACGACCTCGAAGACGAGGAGCTTGCGGGCGACGTCGACGCCGGCGTCGCAGGCGGAGGGATTCTCGAGGCTGTGCTGGCCGGGGGTGGTCAGGGAAAGGCCGACGAAGACGGCGATGGTGAAGAGGGAGTTCACGTTGACGAGGCCGTCGAGGGCCGTAACGTGGACGCTGGTGGTGGACGATGA

Protein sequence

MNSRFAPTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAIEEINGELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDGDGEEGVHVDEAVEGRNVDAGGGR
Homology
BLAST of MS026636 vs. NCBI nr
Match: GFZ20048.1 (hypothetical protein Acr_28g0007530 [Actinidia rufa])

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-37
Identity = 89/130 (68.46%), Postives = 111/130 (85.38%), Query Frame = 0

Query: 12  PKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAIEEINGELEALG 71
           P+A+L+++DHGQHEE+A+H  + GG +HPE ++ +++V P+GLV + A+EEI+ ELEALG
Sbjct: 10  PEADLDDVDHGQHEEEAAHDGAQGGAQHPEPQNPKVDVGPEGLVSVLAVEEIDSELEALG 69

Query: 72  DEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDGDGEEGVHVDEA 131
           DEGGEEEEAEGDDLEDEEL G  +AGVAG GILEAVLA GGQGKA EDGD EEGVHV +A
Sbjct: 70  DEGGEEEEAEGDDLEDEELLGGAEAGVAGEGILEAVLARGGQGKAHEDGDREEGVHVHQA 129

Query: 132 VEGRNVDAGG 142
           V+G +VDAGG
Sbjct: 130 VQGGHVDAGG 139

BLAST of MS026636 vs. NCBI nr
Match: KAE8038128.1 (hypothetical protein FH972_010670 [Carpinus fangiana])

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-32
Identity = 80/143 (55.94%), Postives = 110/143 (76.92%), Query Frame = 0

Query: 1   MNSRFAPTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAI 60
           M+S F P G+H + +L+++DHG+HEE A+H  S+GGG H E ED +++V  +GL+ + A+
Sbjct: 1   MDSGFTPAGQHSQPDLDDVDHGKHEEHATHDGSDGGGHHSEPEDFEVDVGAEGLIDVLAV 60

Query: 61  EEINGELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDG 120
           E++  EL+ALGD+GGEEEEAEGD+LED++L G V  GVAG  +L+A L  GG+G+  EDG
Sbjct: 61  EQVECELQALGDKGGEEEEAEGDNLEDQQLPGHVVVGVAGRLVLQAALVRGGEGEPHEDG 120

Query: 121 DGEEGVHVDEAVEGRNVDAGGGR 144
           DGEE V VDEAV+G +VDAGG R
Sbjct: 121 DGEERVDVDEAVQGSHVDAGGRR 143

BLAST of MS026636 vs. NCBI nr
Match: KZV52374.1 (hypothetical protein F511_32597 [Dorcoceras hygrometricum])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-26
Identity = 72/142 (50.70%), Postives = 106/142 (74.65%), Query Frame = 0

Query: 1   MNSRFAPTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAI 60
           MN R APTG+HP++ L + +HGQH++QA HHR+NGG +HPE ++LQI+V  +  +HI  +
Sbjct: 1   MNCRLAPTGQHPQSYLYHTNHGQHQKQAPHHRTNGGSQHPEPQNLQIDVGFEHFIHILTV 60

Query: 61  EEINGELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDG 120
           E+I+G+ +AL ++  EEEEAEGD+LE++E    V+AGVAG  + EAVL    +G+A +D 
Sbjct: 61  EQIDGQFQALRNQRREEEEAEGDNLENKEFLDYVEAGVAGRWVFEAVLPRSREGEAHKDR 120

Query: 121 DGEEGVHVDEAVEGRNVDAGGG 143
           DGEE V +++ VE  ++DAGGG
Sbjct: 121 DGEERVDINKPVESSDMDAGGG 142

BLAST of MS026636 vs. NCBI nr
Match: KOM38160.1 (hypothetical protein LR48_Vigan03g154200 [Vigna angularis])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 0

Query: 6   APTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAIEEING 65
           A  GEH +A+L+++DHGQH+E+A+H   NGG +H + + LQI+V P+GLV + A+E++  
Sbjct: 35  ATAGEHTEADLDDVDHGQHQEEAAHDGPNGGAQHAQPQGLQIDVGPEGLVCVLAVEQVER 94

Query: 66  ELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDGDGEEG 125
           +LE L  + G +EEA+    EDEEL G VDAGVA    L+A L   G+G+ D+ GDGEEG
Sbjct: 95  QLEPLRHQRGPKEEAKRHHFEDEELLGHVDAGVARRTALQAALPRRGEGEPDKHGDGEEG 154

Query: 126 VHVDEAVEGRNVDAGGG 143
           +HV +AV+GR++DA GG
Sbjct: 155 IHVYQAVQGRDMDARGG 171

BLAST of MS026636 vs. NCBI nr
Match: TQE09410.1 (hypothetical protein C1H46_004903 [Malus baccata])

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-19
Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = 0

Query: 1   MNSRFAPTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAI 60
           M+  FA T +HP+ +LN+I H QH++  +H RS  G +HPES+ LQI+V P+ LV + A+
Sbjct: 154 MDGGFAATRQHPQPDLNHIHHRQHQKHTTHDRSESGPQHPESQRLQIDVGPERLVDVLAV 213

Query: 61  EEINGELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDG 120
           E+++G+L++L  +  E+EEAEGD+LE ++L   VD GVAG  +LEA L+   QG+  EDG
Sbjct: 214 EQVDGQLQSLRHQRREQEEAEGDNLEHQQLLRHVDPGVAGCPVLEAPLSRSCQGEPHEDG 273

Query: 121 DGEE 125
           DGEE
Sbjct: 274 DGEE 277

BLAST of MS026636 vs. ExPASy TrEMBL
Match: A0A7J0HAK0 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_28g0007530 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.3e-37
Identity = 89/130 (68.46%), Postives = 111/130 (85.38%), Query Frame = 0

Query: 12  PKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAIEEINGELEALG 71
           P+A+L+++DHGQHEE+A+H  + GG +HPE ++ +++V P+GLV + A+EEI+ ELEALG
Sbjct: 10  PEADLDDVDHGQHEEEAAHDGAQGGAQHPEPQNPKVDVGPEGLVSVLAVEEIDSELEALG 69

Query: 72  DEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDGDGEEGVHVDEA 131
           DEGGEEEEAEGDDLEDEEL G  +AGVAG GILEAVLA GGQGKA EDGD EEGVHV +A
Sbjct: 70  DEGGEEEEAEGDDLEDEELLGGAEAGVAGEGILEAVLARGGQGKAHEDGDREEGVHVHQA 129

Query: 132 VEGRNVDAGG 142
           V+G +VDAGG
Sbjct: 130 VQGGHVDAGG 139

BLAST of MS026636 vs. ExPASy TrEMBL
Match: A0A660KRS8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010670 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 80/143 (55.94%), Postives = 110/143 (76.92%), Query Frame = 0

Query: 1   MNSRFAPTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAI 60
           M+S F P G+H + +L+++DHG+HEE A+H  S+GGG H E ED +++V  +GL+ + A+
Sbjct: 1   MDSGFTPAGQHSQPDLDDVDHGKHEEHATHDGSDGGGHHSEPEDFEVDVGAEGLIDVLAV 60

Query: 61  EEINGELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDG 120
           E++  EL+ALGD+GGEEEEAEGD+LED++L G V  GVAG  +L+A L  GG+G+  EDG
Sbjct: 61  EQVECELQALGDKGGEEEEAEGDNLEDQQLPGHVVVGVAGRLVLQAALVRGGEGEPHEDG 120

Query: 121 DGEEGVHVDEAVEGRNVDAGGGR 144
           DGEE V VDEAV+G +VDAGG R
Sbjct: 121 DGEERVDVDEAVQGSHVDAGGRR 143

BLAST of MS026636 vs. ExPASy TrEMBL
Match: A0A2Z7CYP1 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_32597 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.1e-27
Identity = 72/142 (50.70%), Postives = 106/142 (74.65%), Query Frame = 0

Query: 1   MNSRFAPTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAI 60
           MN R APTG+HP++ L + +HGQH++QA HHR+NGG +HPE ++LQI+V  +  +HI  +
Sbjct: 1   MNCRLAPTGQHPQSYLYHTNHGQHQKQAPHHRTNGGSQHPEPQNLQIDVGFEHFIHILTV 60

Query: 61  EEINGELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDG 120
           E+I+G+ +AL ++  EEEEAEGD+LE++E    V+AGVAG  + EAVL    +G+A +D 
Sbjct: 61  EQIDGQFQALRNQRREEEEAEGDNLENKEFLDYVEAGVAGRWVFEAVLPRSREGEAHKDR 120

Query: 121 DGEEGVHVDEAVEGRNVDAGGG 143
           DGEE V +++ VE  ++DAGGG
Sbjct: 121 DGEERVDINKPVESSDMDAGGG 142

BLAST of MS026636 vs. ExPASy TrEMBL
Match: A0A0L9U5V1 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g154200 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.5e-24
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 0

Query: 6   APTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAIEEING 65
           A  GEH +A+L+++DHGQH+E+A+H   NGG +H + + LQI+V P+GLV + A+E++  
Sbjct: 35  ATAGEHTEADLDDVDHGQHQEEAAHDGPNGGAQHAQPQGLQIDVGPEGLVCVLAVEQVER 94

Query: 66  ELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDGDGEEG 125
           +LE L  + G +EEA+    EDEEL G VDAGVA    L+A L   G+G+ D+ GDGEEG
Sbjct: 95  QLEPLRHQRGPKEEAKRHHFEDEELLGHVDAGVARRTALQAALPRRGEGEPDKHGDGEEG 154

Query: 126 VHVDEAVEGRNVDAGGG 143
           +HV +AV+GR++DA GG
Sbjct: 155 IHVYQAVQGRDMDARGG 171

BLAST of MS026636 vs. ExPASy TrEMBL
Match: A0A540NFW3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004903 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = 0

Query: 1   MNSRFAPTGEHPKANLNNIDHGQHEEQASHHRSNGGGEHPESEDLQINVCPKGLVHIPAI 60
           M+  FA T +HP+ +LN+I H QH++  +H RS  G +HPES+ LQI+V P+ LV + A+
Sbjct: 154 MDGGFAATRQHPQPDLNHIHHRQHQKHTTHDRSESGPQHPESQRLQIDVGPERLVDVLAV 213

Query: 61  EEINGELEALGDEGGEEEEAEGDDLEDEELAGDVDAGVAGGGILEAVLAGGGQGKADEDG 120
           E+++G+L++L  +  E+EEAEGD+LE ++L   VD GVAG  +LEA L+   QG+  EDG
Sbjct: 214 EQVDGQLQSLRHQRREQEEAEGDNLEHQQLLRHVDPGVAGCPVLEAPLSRSCQGEPHEDG 273

Query: 121 DGEE 125
           DGEE
Sbjct: 274 DGEE 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GFZ20048.16.9e-3768.46hypothetical protein Acr_28g0007530 [Actinidia rufa][more]
KAE8038128.13.9e-3255.94hypothetical protein FH972_010670 [Carpinus fangiana][more]
KZV52374.11.9e-2650.70hypothetical protein F511_32597 [Dorcoceras hygrometricum][more]
KOM38160.11.1e-2350.36hypothetical protein LR48_Vigan03g154200 [Vigna angularis][more]
TQE09410.13.8e-1949.19hypothetical protein C1H46_004903 [Malus baccata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J0HAK03.3e-3768.46Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_28g0007530 PE=4 SV=1[more]
A0A660KRS81.9e-3255.94Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010670 PE=4 SV=1[more]
A0A2Z7CYP19.1e-2750.70Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_32597 PE=4... [more]
A0A0L9U5V15.5e-2450.36Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g154200 PE... [more]
A0A540NFW31.8e-1949.19Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004903 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026636.1MS026636.1mRNA