MS026383 (gene) Bitter gourd (TR) v1

Overview
NameMS026383
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold459: 1769969 .. 1771040 (+)
RNA-Seq ExpressionMS026383
SyntenyMS026383
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAGAGAAGGCATATGTAGAATGCAAGGCGAAGGCGATGTCAGTGGTGTCGGTGACAAGCTCAACGGGGGCCAGTTGGGGCCCCGGGCCACAACCCTAGAAGTCGGGGTTCCGTCGAGAGTTTGGACGAGCGGCTTTAGAGTTAGATGCATATTAGTGAGATATGTAAGCACGCCAAGTTTCGTGTCAATCGGAGTTCAGACGTGCGCTCTACGTTGGCGAGTGACTCCTCGCCACTTTGCACGTACACGCCTGCCAGACCAAGAATGCCTTAGAATGTACCTTAGGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCTTGTGGCCTAAGTGAGCTACCCCATGGCACATGCGTGTGTCATGGCGTGGGCGAGCGTTGCAAGACCAAGGTCTTGGGCGTCTTCCTTCGAGAATGGGAATCTCAAGGACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCCTCGTCCCATGGGCTGGAGGTTGCACATAGGGGCCGTTATGCGGTACGGTATGCTCGAACGACAAGGCACGGTCGCGGGAGTCGACGTGCCACGATTATGTCCGGATGGATGGATGTCCGAAAGGTCCCGATCATAAATACAAGTCCATGGGTCGGTTCTCGGTATGCGTGCCCAAGAGTTCAGCGAAGCCCGATGACATCCCGATGCTCGGGGTGGCATCCTACAGTACCGGTGGGCACCCGGTAAGTGAGAAAAAGCTAGTCTTGGCCCGGTAAGCGGCAAGACTCATCCCGGTTGCCAAGTTTAGTCATTCCTTGTCCGGATCTCGGCAGGAATCATCCCGGCAGTACCCGGTAAGGCCGTTTAGCCCGTTATTGACTAGTTTCTCGGCAGGAATGGTCCTAGAGGCGTCCGATGGGTCCGATAAGCTAGTTTTGACATAGTTAAGCGGCAGGAATCTCCCAGTTGTACCCGGTTGGCGTTTTAAGCTCGTTCTGACCCCGTTATAGGTCAGAACTCATCCCGGTAAGGTCCTGGCTCATCGTAGGAGCGGGACGACCGAGTGGCCGAGAACCAAGATGGTTGGAAAAGTGAAATGA

mRNA sequence

ATGCCTAGAGAAGGCATATGTAGAATGCAAGGCGAAGGCGATGTCAGTGGTGTCGGTGACAAGCTCAACGGGGGCCAGTTGGGGCCCCGGGCCACAACCCTAGAAGTCGGGGTTCCGTCGAGAGTTTGGACGAGCGGCTTTAGAGTTAGATGCATATTAGTGAGATATGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCTTGTGGCCTAAGTGAGCTACCCCATGGCACATGCGTGTGTCATGGCGTGGGCGAGCGTTGCAAGACCAAGGTCTTGGGCGTCTTCCTTCGAGAATGGGAATCTCAAGGACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCCTCGTCCCATGGGCTGGAGGTTGCACATAGGGGCCGTTATGCGGTACGGTATGCTCGAACGACAAGGCACGGTCGCGGGAGTCGACGTGCCACGATTATGTCCGGATGGATGGATGTCCGAAAGGTCCCGATCATAAATACAAGTCCATGGGTCGGTTCTCGGTATGCGTGCCCAAGAGTTCAGCGAAGCCCGATGACATCCCGATGCTCGGGGTGGCATCCTACAGTACCGGAATCATCCCGGCAGTACCCGGTAAGGCCGTTTAGCCCGTTATTGACTAGTTTCTCGGCAGGAATGGTCCTAGAGGCGTCCGATGGGTCCGATAAGCTAGTCAGAACTCATCCCGGTAAGGTCCTGGCTCATCGTAGGAGCGGGACGACCGAGTGGCCGAGAACCAAGATGGTTGGAAAAGTGAAATGA

Coding sequence (CDS)

ATGCCTAGAGAAGGCATATGTAGAATGCAAGGCGAAGGCGATGTCAGTGGTGTCGGTGACAAGCTCAACGGGGGCCAGTTGGGGCCCCGGGCCACAACCCTAGAAGTCGGGGTTCCGTCGAGAGTTTGGACGAGCGGCTTTAGAGTTAGATGCATATTAGTGAGATATGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCTTGTGGCCTAAGTGAGCTACCCCATGGCACATGCGTGTGTCATGGCGTGGGCGAGCGTTGCAAGACCAAGGTCTTGGGCGTCTTCCTTCGAGAATGGGAATCTCAAGGACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCCTCGTCCCATGGGCTGGAGGTTGCACATAGGGGCCGTTATGCGGTACGGTATGCTCGAACGACAAGGCACGGTCGCGGGAGTCGACGTGCCACGATTATGTCCGGATGGATGGATGTCCGAAAGGTCCCGATCATAAATACAAGTCCATGGGTCGGTTCTCGGTATGCGTGCCCAAGAGTTCAGCGAAGCCCGATGACATCCCGATGCTCGGGGTGGCATCCTACAGTACCGGAATCATCCCGGCAGTACCCGGTAAGGCCGTTTAGCCCGTTATTGACTAGTTTCTCGGCAGGAATGGTCCTAGAGGCGTCCGATGGGTCCGATAAGCTAGTCAGAACTCATCCCGGTAAGGTCCTGGCTCATCGTAGGAGCGGGACGACCGAGTGGCCGAGAACCAAGATGGTTGGAAAAGTGAAATGA

Protein sequence

MPREGICRMQGEGDVSGVGDKLNGGQLGPRATTLEVGVPSRVWTSGFRVRCILVRYGEAWCQLSTTPGPCGLSELPHGTCVCHGVGERCKTKVLGVFLREWESQGQCRTARVCRHCASSHGLEVAHRGRYAVRYARTTRHGRGSRRATIMSGWMDVRKVPIINTSPWVGSRYACPRVQRSPMTSRCSGWHPTVPESSRQYPVRPFSPLLTSFSAGMVLEASDGSDKLVRTHPGKVLAHRRSGTTEWPRTKMVGKVK
Homology
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BLAST of MS026383 vs. NCBI nr
Match: KAG7022404.1 (hypothetical protein SDJN02_16135, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-05
Identity = 41/127 (32.28%), Postives = 64/127 (50.39%), Query Frame = 0 

Query: 4   EGICRMQGEGDVS-GVGDKLN--GGQLGPRATTLEVGVPSRVWTSGFRVRCILVR--YGE 63
           E + R +   D+S  + DK+    G++GPRA T +V V   +W+ G  V+ + ++  Y  
Sbjct: 44  EDMLRHKHNRDISIDMKDKIGLLKGRVGPRALTSKVEVSEGIWSCGSGVKSVHMKYEYSP 103

Query: 64  AWCQLSTTPGPCGLSELPHGTCVCHGVGERCKTKVLGVFLREWESQGQCRTARVCRHCAS 123
           +   +            PH   V   +GER +  V G    +W  +GQ +TARVCR+CA 
Sbjct: 104 SLVSIGHWTDNARRRMTPHENHVYSCMGERAEMSVSGRLPLKWVFEGQYQTARVCRYCAL 163

Query: 124 SHGLEVA 126
           +  LEVA
Sbjct: 164 ARVLEVA 170

The following BLAST results are available for this feature:
BLAST of MS026383 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022404.11.1e-0532.28hypothetical protein SDJN02_16135, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of MS026383 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS026383 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS026383 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026383.1MS026383.1mRNA