MS025066 (gene) Bitter gourd (TR) v1

Overview


Name	MS025066
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CYSTM domain-containing protein
Location	scaffold404: 129917 .. 130473 (+)
RNA-Seq Expression	MS025066
Synteny	MS025066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATCCAAAATATGGCTATCCTTACCCACCTCCTCAAGGTAAATTTTCCACACCAATCTTCACTAATCTGTTTTCGAATTCGAAATTTCGATCGGTAACAAAGAAGATTACCGATCATGTCTTTACTGTCGAACTATGCTTTCCAGTTGTTTGTTGGCGGTGAAATGTTTTGAGTGTTGTGATACTTATTTGGCAGGAGGTTATTATCAAGGGCCGCCCGTGATGGCGCCACCGCAATACGCGGTGCCACCACCGAAAAGGCAGCCAGGCTTCTTGGAGGGATGGTATGCCAAAGCAACTCTCGGTCTCGGTTTCGGTTTCGATTTTGGTTTTGTTTTGACAGAGGTTGGGTTTTGTTTGGTTGTTGTTGTTGCAGCCTTGCTGCTCTGTGCTGCTGCTGTCTCCTTGATGAGTGCTGCTGTGACCCTTCCATCATATTTCTTGCTTGATGTCAATCAAAGCTTTGCCCATTCTGATTCAAAGGCTTCTCGTTTCTTTGGGGGTGATTTGTTTTTGGTGTCAAGTTTGAATGAAGATTTGATTGCTGTGTAG

mRNA sequence

ATGAGTGATCCAAAATATGGCTATCCTTACCCACCTCCTCAAGGAGGTTATTATCAAGGGCCGCCCGTGATGGCGCCACCGCAATACGCGGTGCCACCACCGAAAAGGCAGCCAGGCTTCTTGGAGGGATGGTATGCCAAAGCAACTCTCGGTCTCGGTTTCGGTTTCGATTTTGGTTTTGTTTTGACAGAGGTTGGGTTTTGTTTGGTTGTTGTTGTTGCAGCCTTGCTGCTCTGTGCTGCTGCTGTCTCCTTGATGAGTGCTGCTGTGACCCTTCCATCATATTTCTTGCTTGATGTCAATCAAAGCTTTGCCCATTCTGATTCAAAGGCTTCTCGTTTCTTTGGGGGTGATTTGTTTTTGGTGTCAAGTTTGAATGAAGATTTGATTGCTGTGTAG

Coding sequence (CDS)

ATGAGTGATCCAAAATATGGCTATCCTTACCCACCTCCTCAAGGAGGTTATTATCAAGGGCCGCCCGTGATGGCGCCACCGCAATACGCGGTGCCACCACCGAAAAGGCAGCCAGGCTTCTTGGAGGGATGGTATGCCAAAGCAACTCTCGGTCTCGGTTTCGGTTTCGATTTTGGTTTTGTTTTGACAGAGGTTGGGTTTTGTTTGGTTGTTGTTGTTGCAGCCTTGCTGCTCTGTGCTGCTGCTGTCTCCTTGATGAGTGCTGCTGTGACCCTTCCATCATATTTCTTGCTTGATGTCAATCAAAGCTTTGCCCATTCTGATTCAAAGGCTTCTCGTTTCTTTGGGGGTGATTTGTTTTTGGTGTCAAGTTTGAATGAAGATTTGATTGCTGTGTAG

Protein sequence

MSDPKYGYPYPPPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYAKATLGLGFGFDFGFVLTEVGFCLVVVVAALLLCAAAVSLMSAAVTLPSYFLLDVNQSFAHSDSKASRFFGGDLFLVSSLNEDLIAV

Homology

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BLAST of MS025066 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 71/104 (68.27%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MSDPKYGYPYPPPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYAKATLGLGFGFDFGF 60
           MSDPKY YPYPPPQGGYYQGPPVMAPPQYA PPPKRQPGFLEGW         FGF    
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGW---------FGFPVRL 60

Query: 61  VLTEVGFCLVVVVAALLLCAAAVSLMSAAVTLPSYFLLDVNQSF 105
           V    GF    V AAL L AAAVSLM+AAVTLP  FLLD  + F
Sbjct: 61  VWLNRGFNF--VFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDF 93

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BLAST of MS025066 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 61/120 (50.83%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 1   MSDPKYGYPYPPPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYAKATLGLGFGFDFGF 60
           MSDPKY YPYPPPQGGYYQGPPVMAPPQYA PPP+RQP                      
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP---------------------- 60

Query: 61  VLTEVGFCLVVVVAALLLCAAAVSLMSAAVTLPSYFLLDVNQSF----AHSDSKASRFFG 117
                         AL L AAAVSLM+AAVTLP  FLLD  + F    AH+    + FFG
Sbjct: 61  --------------ALQLYAAAVSLMNAAVTLPLSFLLDAMREFIAFVAHTHVFINTFFG 84

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BLAST of MS025066 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  MSDPKYGYPYPPPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYA 47
          MSDPKY YPYPPP GGYYQGPPVMAPPQYA PPPKRQPGFLEG  A
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLA 46

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BLAST of MS025066 vs. NCBI nr
Match: PQP99874.1 (uncharacterized protein Pyn_05607 [Prunus yedoensis var. nudiflora] >PQQ01249.1 uncharacterized protein Pyn_09821 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-12
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MSDPKYGYPYPPP-QGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYA 47
          MSDPKYGYPYP   QGGYYQGPPVMAPPQYA PPP+R+PGFLEG  A
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLA 47

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BLAST of MS025066 vs. NCBI nr
Match: KAF9609677.1 (hypothetical protein IFM89_017856 [Coptis chinensis])

HSP 1 Score: 80.9 bits (198), Expect = 9.2e-12
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1  MSDPKYGYPYPPPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYA 47
          M+DPKY YPYP P  GYYQGPPVMAPPQYA PPP+RQPGFLEG  A
Sbjct: 1  MNDPKYAYPYPYPAQGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLA 46

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BLAST of MS025066 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.7e-24
Identity = 71/104 (68.27%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MSDPKYGYPYPPPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYAKATLGLGFGFDFGF 60
           MSDPKY YPYPPPQGGYYQGPPVMAPPQYA PPPKRQPGFLEGW         FGF    
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGW---------FGFPVRL 60

Query: 61  VLTEVGFCLVVVVAALLLCAAAVSLMSAAVTLPSYFLLDVNQSF 105
           V    GF    V AAL L AAAVSLM+AAVTLP  FLLD  + F
Sbjct: 61  VWLNRGFNF--VFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDF 93

[Close]

BLAST of MS025066 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 61/120 (50.83%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 1   MSDPKYGYPYPPPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYAKATLGLGFGFDFGF 60
           MSDPKY YPYPPPQGGYYQGPPVMAPPQYA PPP+RQP                      
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP---------------------- 60

Query: 61  VLTEVGFCLVVVVAALLLCAAAVSLMSAAVTLPSYFLLDVNQSF----AHSDSKASRFFG 117
                         AL L AAAVSLM+AAVTLP  FLLD  + F    AH+    + FFG
Sbjct: 61  --------------ALQLYAAAVSLMNAAVTLPLSFLLDAMREFIAFVAHTHVFINTFFG 84

[Close]

BLAST of MS025066 vs. ExPASy TrEMBL
Match: A0A314Y8T5 (CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05607 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MSDPKYGYPYPPP-QGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYA 47
          MSDPKYGYPYP   QGGYYQGPPVMAPPQYA PPP+R+PGFLEG  A
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLA 47

[Close]

BLAST of MS025066 vs. ExPASy TrEMBL
Match: A0A6J5XT78 (CYSTM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS39353 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MSDPKYGYPYPPP-QGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYA 47
          M+DPKYGYPYP   QGGYYQGPPVMAPPQYA PPP+R+PGFLEG  A
Sbjct: 1  MNDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLA 47

[Close]

BLAST of MS025066 vs. ExPASy TrEMBL
Match: A0A540KWR0 (CYSTM domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_035992 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MSDPKYGYPYP-----PPQGGYYQGPPVMAPPQYAVPPPKRQPGFLEGWYA 47
          M+D KYGYPYP     PPQGGYYQGPPV+APPQY  PPP+R+PGFLEG  A
Sbjct: 1  MADQKYGYPYPAQGGYPPQGGYYQGPPVVAPPQYGAPPPRREPGFLEGCLA 51

[Close]

BLAST of MS025066 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 32/56 (57.14%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 1  MSDPKYGYPYPPPQGGYYQG--PPVMAPPQY--------AVPPPKRQPGFLEGWYA 47
          MSDPKY YPYP P G Y QG  PPV  PPQY          PPP R+ GFLEG  A
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLA 55

The following BLAST results are available for this feature:

BLAST of MS025066 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031406.1	1.8e-23	68.27	cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v...	[more]
KGN43811.1	8.1e-16	50.83	hypothetical protein Csa_017361 [Cucumis sativus]	[more]
KAG6571885.1	1.5e-14	89.13	hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PQP99874.1	5.4e-12	82.98	uncharacterized protein Pyn_05607 [Prunus yedoensis var. nudiflora] >PQQ01249.1 ...	[more]
KAF9609677.1	9.2e-12	80.43	hypothetical protein IFM89_017856 [Coptis chinensis]	[more]

BLAST of MS025066 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SN04	8.7e-24	68.27	Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A0A0K7L8	3.9e-16	50.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1	[more]
A0A314Y8T5	2.6e-12	82.98	CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN...	[more]
A0A6J5XT78	5.8e-12	80.85	CYSTM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3935...	[more]
A0A540KWR0	1.7e-11	72.55	CYSTM domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_035992 PE=3 ...	[more]

BLAST of MS025066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33660.1	2.1e-06	57.14	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..79
None	No IPR available	PANTHER	PTHR31568:SF72	ADHESIVE/PROLINE-RICH-LIKE PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025066.1	MS025066.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane