MS023840 (gene) Bitter gourd (TR) v1

Overview


Name	MS023840
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	A2L_zn_ribbon domain-containing protein
Location	scaffold368: 50007 .. 50713 (-)
RNA-Seq Expression	MS023840
Synteny	MS023840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCGATCCCAAATCGGAGACCAAAAACCACGATTGCCGCCATAAACGACGCCGCTTCGCAGCAGCTTGTAGCTGATCCCTCCCAACTCCAGATTACTTGGCAAATAGCCGTCGGCGCCATTGGTAAAATCGCCAATCTTCCAATTCAATACTCTCTATTGCTTTTGTTTTCATTTTGTATCCTATATATGTTGCAGCTGGAGTAACCCCGTTTGTGGTGGCCGGAATTGAGTTCACCAAGAGAATTGTGAGTTTACCAATTCCAAATTGCAAACAAAATTCCGCATTAACTAACAAATTAGAACATCTAGGAAACTCGAAAAGCTTCAGGTCGATAGAGATATTGTTGTTAAGTATCTCACGATACAGATAAAAGTGGATTTCCTTTCGTTACTAATTGGTTTGAGGTACAACTTTTAATATGATATTCGAACCAAAAAATAAGGTCCAACCAAAATCGATGAAGTTGAAGAATCATGATCTTAAGTGGGCAGGTGGCACAGCAAAGATGTGAAGAATGTGGAGGTTCGGGGCTTGTTCTTATGGAGGACGACTACTTCCGTTGCCCACAATGCGGTATTAATAGTGACTTTCGAGTATTTAGGGATGATTTTTTACGTCAAAAGTTGCCTTGGTTTTTTACATTTGTGAGTTTTGGGCAGGTGGGTTTTTGCCTTGGCAGTCATGGAAGCGATTCTTTTGGGGC

mRNA sequence

AATTCGATCCCAAATCGGAGACCAAAAACCACGATTGCCGCCATAAACGACGCCGCTTCGCAGCAGCTTGTAGCTGATCCCTCCCAACTCCAGATTACTTGGCAAATAGCCGTCGGCGCCATTGCTGGAGTAACCCCGTTTGTGGTGGCCGGAATTGAGTTCACCAAGAGAATTGTGGCACAGCAAAGATGTGAAGAATGTGGAGGTTCGGGGCTTGTTCTTATGGAGGACGACTACTTCCGTTGCCCACAATGCGGTGGGTTTTTGCCTTGGCAGTCATGGAAGCGATTCTTTTGGGGC

Coding sequence (CDS)

AATTCGATCCCAAATCGGAGACCAAAAACCACGATTGCCGCCATAAACGACGCCGCTTCGCAGCAGCTTGTAGCTGATCCCTCCCAACTCCAGATTACTTGGCAAATAGCCGTCGGCGCCATTGCTGGAGTAACCCCGTTTGTGGTGGCCGGAATTGAGTTCACCAAGAGAATTGTGGCACAGCAAAGATGTGAAGAATGTGGAGGTTCGGGGCTTGTTCTTATGGAGGACGACTACTTCCGTTGCCCACAATGCGGTGGGTTTTTGCCTTGGCAGTCATGGAAGCGATTCTTTTGGGGC

Protein sequence

NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVAQQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG

Homology

[Close]

BLAST of MS023840 vs. NCBI nr
Match: XP_022154992.1 (uncharacterized protein LOC111022135 [Momordica charantia])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NSIPNRRPKTTIAAINDAASQQ  ADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA
Sbjct: 19  NSIPNRRPKTTIAAINDAASQQ-QADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 78

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG
Sbjct: 79  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 117

[Close]

BLAST of MS023840 vs. NCBI nr
Match: XP_038903334.1 (uncharacterized protein LOC120089955 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NSI NRR   T AAI+ A+   L AD  Q++ITWQI VGAIAGVTPFVVAGIEF+KRI+A
Sbjct: 29  NSIQNRRRTATYAAIDGAS---LTADSIQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMA 88

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVL +DDYFRCP+CGGFLPWQSW+RFFWG
Sbjct: 89  QKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWRRFFWG 125

[Close]

BLAST of MS023840 vs. NCBI nr
Match: XP_023005598.1 (uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharacterized protein LOC111498537 [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 4.5e-35
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NS+  RR   T AAI+ A+     ADP+Q++ITWQI VGAIAGVTPFVVAGIEF+KRIVA
Sbjct: 35  NSLNKRRRTPTFAAIDGASLAAAAADPTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVA 94

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVLM+ DYFRCP+CGGFLPWQSW+RFF G
Sbjct: 95  QKRCKECGGSGLVLMDKDYFRCPECGGFLPWQSWRRFFSG 134

[Close]

BLAST of MS023840 vs. NCBI nr
Match: XP_008449071.1 (PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 4.5e-35
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NS+ NRR     AAI+ A+S  L AD +Q++ITWQI VGAIAGVTPFVVAGIEF+KRI+A
Sbjct: 23  NSMHNRRRTPAFAAIDGASS--LAADSTQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMA 82

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVL +DDYFRCP CGGFLPWQSW+RFFWG
Sbjct: 83  QKRCKECGGSGLVLRDDDYFRCPDCGGFLPWQSWRRFFWG 120

[Close]

BLAST of MS023840 vs. NCBI nr
Match: XP_022935718.1 (uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937262.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937933.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022938581.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_023540549.1 uncharacterized protein LOC111800877 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 4.5e-35
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NS+  RR   T AAI+ A+     ADP+Q++ITWQI VGAIAGVTPFVVAGIEF+KRIVA
Sbjct: 35  NSLNKRRRTPTFAAIDGASLAAAAADPTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVA 94

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVLM+ DYFRCP+CGGFLPWQSW+RFF G
Sbjct: 95  QKRCKECGGSGLVLMDKDYFRCPECGGFLPWQSWRRFFSG 134

[Close]

BLAST of MS023840 vs. ExPASy TrEMBL
Match: A0A6J1DN65 (uncharacterized protein LOC111022135 OS=Momordica charantia OX=3673 GN=LOC111022135 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-49
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NSIPNRRPKTTIAAINDAASQQ  ADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA
Sbjct: 19  NSIPNRRPKTTIAAINDAASQQ-QADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 78

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG
Sbjct: 79  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 117

[Close]

BLAST of MS023840 vs. ExPASy TrEMBL
Match: A0A6J1L2M2 (uncharacterized protein LOC111498537 OS=Cucurbita maxima OX=3661 GN=LOC111498537 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NS+  RR   T AAI+ A+     ADP+Q++ITWQI VGAIAGVTPFVVAGIEF+KRIVA
Sbjct: 35  NSLNKRRRTPTFAAIDGASLAAAAADPTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVA 94

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVLM+ DYFRCP+CGGFLPWQSW+RFF G
Sbjct: 95  QKRCKECGGSGLVLMDKDYFRCPECGGFLPWQSWRRFFSG 134

[Close]

BLAST of MS023840 vs. ExPASy TrEMBL
Match: A0A6J1FBA7 (uncharacterized protein LOC111442262 OS=Cucurbita moschata OX=3662 GN=LOC111442262 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NS+  RR   T AAI+ A+     ADP+Q++ITWQI VGAIAGVTPFVVAGIEF+KRIVA
Sbjct: 35  NSLNKRRRTPTFAAIDGASLAAAAADPTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVA 94

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVLM+ DYFRCP+CGGFLPWQSW+RFF G
Sbjct: 95  QKRCKECGGSGLVLMDKDYFRCPECGGFLPWQSWRRFFSG 134

[Close]

BLAST of MS023840 vs. ExPASy TrEMBL
Match: A0A1S3BLU9 (uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NS+ NRR     AAI+ A+S  L AD +Q++ITWQI VGAIAGVTPFVVAGIEF+KRI+A
Sbjct: 23  NSMHNRRRTPAFAAIDGASS--LAADSTQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMA 82

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVL +DDYFRCP CGGFLPWQSW+RFFWG
Sbjct: 83  QKRCKECGGSGLVLRDDDYFRCPDCGGFLPWQSWRRFFWG 120

[Close]

BLAST of MS023840 vs. ExPASy TrEMBL
Match: A0A0A0L7H1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   NSIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVA 60
           NSI NRR     AAI+ A+   L AD +Q+QITWQI VGAIAGVTPFVVAGIEF+KRI  
Sbjct: 28  NSIHNRRRTPAFAAIDGAS--LLPADSTQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRV 87

Query: 61  QQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           Q+RC+ECGGSGLVL +DDYFRCP+CGGFLPWQSW+RFFWG
Sbjct: 88  QKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWRRFFWG 125

[Close]

BLAST of MS023840 vs. TAIR 10
Match: AT5G55570.1 (unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-32
Identity = 62/99 (62.63%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 2   SIPNRRPKTTIAAINDAASQQLVADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVAQ 61
           ++ NRR KTT +A+++ A    VA+  + +ITWQI VG IAG+ PFVVAG+EF+KRI+AQ
Sbjct: 48  TMSNRRLKTT-SALSELA--DTVAETGKSEITWQIIVGTIAGIIPFVVAGVEFSKRIIAQ 107

Query: 62  QRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 101
           +RCEECGG+GLV  +  YFRCP+CGGFLPWQSW+RFF G
Sbjct: 108 KRCEECGGTGLVSRDKKYFRCPECGGFLPWQSWRRFFTG 143

The following BLAST results are available for this feature:

BLAST of MS023840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154992.1	1.2e-48	98.00	uncharacterized protein LOC111022135 [Momordica charantia]	[more]
XP_038903334.1	2.0e-35	75.00	uncharacterized protein LOC120089955 [Benincasa hispida]	[more]
XP_023005598.1	4.5e-35	73.00	uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharac...	[more]
XP_008449071.1	4.5e-35	74.00	PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo]	[more]
XP_022935718.1	4.5e-35	73.00	uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 unchar...	[more]

BLAST of MS023840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN65	5.9e-49	98.00	uncharacterized protein LOC111022135 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1L2M2	2.2e-35	73.00	uncharacterized protein LOC111498537 OS=Cucurbita maxima OX=3661 GN=LOC111498537...	[more]
A0A6J1FBA7	2.2e-35	73.00	uncharacterized protein LOC111442262 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A1S3BLU9	2.2e-35	74.00	uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=...	[more]
A0A0A0L7H1	1.8e-34	74.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1	[more]

BLAST of MS023840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55570.1	8.5e-32	62.63	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36809	TRANSMEMBRANE PROTEIN	coord: 5..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023840.1	MS023840.1	mRNA