MS023571 (gene) Bitter gourd (TR) v1

Overview


Name	MS023571
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold1258: 251173 .. 251283 (+)
RNA-Seq Expression	MS023571
Synteny	MS023571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAGATGATCGGCTTACATGACTATGGTGATACTCATGCCAATCACAAACATGATCCTCATCATCCTCTTGCTGTCAAAGGTAAAGAAAAAAAAAAGAAACTAACTTCA

mRNA sequence

GAAGAGATGATCGGCTTACATGACTATGGTGATACTCATGCCAATCACAAACATGATCCTCATCATCCTCTTGCTGTCAAAGGTAAAGAAAAAAAAAAGAAACTAACTTCA

Coding sequence (CDS)

GAAGAGATGATCGGCTTACATGACTATGGTGATACTCATGCCAATCACAAACATGATCCTCATCATCCTCTTGCTGTCAAAGGTAAAGAAAAAAAAAAGAAACTAACTTCA

Protein sequence

EEMIGLHDYGDTHANHKHDPHHPLAVKGKEKKKKLTS

Homology

[Close]

BLAST of MS023571 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   EEMIGLHDYGDTHANHKHDPHHPLAVKGKEKK 33
           EEMIGLHDYGDTHANHKHDPHHPLAVKG  K+
Sbjct: 69  EEMIGLHDYGDTHANHKHDPHHPLAVKGNNKE 100

[Close]

BLAST of MS023571 vs. ExPASy TrEMBL
Match: A0A6J1D9T4 (uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018956 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   EEMIGLHDYGDTHANHKHDPHHPLAVKGKEKK 33
           EEMIGLHDYGDTHANHKHDPHHPLAVKG  K+
Sbjct: 69  EEMIGLHDYGDTHANHKHDPHHPLAVKGNNKE 100

[Close]

BLAST of MS023571 vs. ExPASy TrEMBL
Match: A0A6J1K9X5 (uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.2e-04
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  EEMIGLHDYGDTHANHKHDPHHPLAVKGKEKK 33
          +EMIGL DYGD  ANH+H+PHHPL V+G +K+
Sbjct: 42 DEMIGLRDYGDARANHRHEPHHPLGVEGYKKE 73

The following BLAST results are available for this feature:

BLAST of MS023571 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150920.1	3.0e-08	90.63	uncharacterized protein LOC111018956 [Momordica charantia]	[more]

BLAST of MS023571 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9T4	1.4e-08	90.63	uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1K9X5	6.2e-04	65.63	uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989...	[more]

BLAST of MS023571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023571.1	MS023571.1	mRNA