MS023294 (gene) Bitter gourd (TR) v1

Overview


Name	MS023294
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Zinc finger family protein
Location	scaffold101: 406158 .. 406352 (-)
RNA-Seq Expression	MS023294
Synteny	MS023294

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAACTCAGCGGCGGCGTTCATAAGAAGAAGCAGCCTAAATGTGGAATCTGTGGGAAGGAGTTTTGTTCCATGAAGGGTTTGTATGGTCACATGAGGACTCATCCAGACCGATCCTGGAGAGGGATTGAACCTCCGAATACTGTAACGACAACAGCTCCGGCCTGGTCTCTCACCGCCCCGAGAGGGCGGAAG

mRNA sequence

ATTAAACTCAGCGGCGGCGTTCATAAGAAGAAGCAGCCTAAATGTGGAATCTGTGGGAAGGAGTTTTGTTCCATGAAGGGTTTGTATGGTCACATGAGGACTCATCCAGACCGATCCTGGAGAGGGATTGAACCTCCGAATACTGTAACGACAACAGCTCCGGCCTGGTCTCTCACCGCCCCGAGAGGGCGGAAG

Coding sequence (CDS)

ATTAAACTCAGCGGCGGCGTTCATAAGAAGAAGCAGCCTAAATGTGGAATCTGTGGGAAGGAGTTTTGTTCCATGAAGGGTTTGTATGGTCACATGAGGACTCATCCAGACCGATCCTGGAGAGGGATTGAACCTCCGAATACTGTAACGACAACAGCTCCGGCCTGGTCTCTCACCGCCCCGAGAGGGCGGAAG

Protein sequence

IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK

Homology

[Close]

BLAST of MS023294 vs. NCBI nr
Match: XP_022143487.1 (uncharacterized protein LOC111013363 [Momordica charantia])

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTA 60
          IKLSGG+HKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTA
Sbjct: 9  IKLSGGLHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTA 68

Query: 61 PRGRK 66
          PRGRK
Sbjct: 69 PRGRK 73

[Close]

BLAST of MS023294 vs. NCBI nr
Match: PHT44057.1 (hypothetical protein CQW23_18082 [Capsicum baccatum])

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV----TTTAPAWSLTAPRGRK 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +    T T P WS+TA RGRK
Sbjct: 91  PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKGTGTVPVWSVTAKRGRK 147

[Close]

BLAST of MS023294 vs. NCBI nr
Match: KAF3666527.1 (hypothetical protein FXO37_10506 [Capsicum annuum])

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGR 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGR
Sbjct: 105 PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKTAAASTVTVPVWSVTAKRGR 164

[Close]

BLAST of MS023294 vs. NCBI nr
Match: PHT77464.1 (hypothetical protein T459_20986 [Capsicum annuum])

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGR 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGR
Sbjct: 106 PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKTAAASTVTVPVWSVTAKRGR 165

[Close]

BLAST of MS023294 vs. NCBI nr
Match: PHU12866.1 (hypothetical protein BC332_19796 [Capsicum chinense])

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGR 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGR
Sbjct: 109 PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKTAAASTVTVPVWSVTAKRGR 168

[Close]

BLAST of MS023294 vs. ExPASy Swiss-Prot
Match: Q9SIJ0 (Zinc finger protein ZAT2 OS=Arabidopsis thaliana OX=3702 GN=ZAT2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.2e-08
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 15 CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPN 48
          C  CGK+F S+K L+GHMR HP+R WRGI PP+
Sbjct: 67 CTECGKQFGSLKALFGHMRCHPERQWRGINPPS 99

[Close]

BLAST of MS023294 vs. ExPASy Swiss-Prot
Match: O65499 (Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-07
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 15  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP 47
           C  CG++F S K L+GHMR HP+R WRGI PP
Sbjct: 79  CTECGRKFWSWKALFGHMRCHPERQWRGINPP 110

[Close]

BLAST of MS023294 vs. ExPASy TrEMBL
Match: A0A6J1CQY7 (uncharacterized protein LOC111013363 OS=Momordica charantia OX=3673 GN=LOC111013363 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.6e-32
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTA 60
          IKLSGG+HKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTA
Sbjct: 9  IKLSGGLHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTA 68

Query: 61 PRGRK 66
          PRGRK
Sbjct: 69 PRGRK 73

[Close]

BLAST of MS023294 vs. ExPASy TrEMBL
Match: A0A2G2WFN4 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_18082 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV----TTTAPAWSLTAPRGRK 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +    T T P WS+TA RGRK
Sbjct: 91  PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKGTGTVPVWSVTAKRGRK 147

[Close]

BLAST of MS023294 vs. ExPASy TrEMBL
Match: A0A2G3C2B5 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_19796 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGR 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGR
Sbjct: 109 PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKTAAASTVTVPVWSVTAKRGR 168

[Close]

BLAST of MS023294 vs. ExPASy TrEMBL
Match: A0A1U8HEI9 (zinc finger protein ZAT2 OS=Capsicum annuum OX=4072 GN=LOC107877438 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGR 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGR
Sbjct: 120 PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKTAAASTVTVPVWSVTAKRGR 179

[Close]

BLAST of MS023294 vs. ExPASy TrEMBL
Match: A0A2G2Z677 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_20986 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 13  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGR 66
           P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGR
Sbjct: 106 PTCSICGKNFPSMKSLFGHMRCHPERAWRGIQPPEDIDRKTAAASTVTVPVWSVTAKRGR 165

[Close]

BLAST of MS023294 vs. TAIR 10
Match: AT2G26940.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-09
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 14  KCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP 47
           +C +CGKEF +M  L+GHMR HPDR+W+GI PP
Sbjct: 120 RCCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPP 152

[Close]

BLAST of MS023294 vs. TAIR 10
Match: AT2G17180.1 (C2H2-like zinc finger protein )

HSP 1 Score: 57.0 bits (136), Expect = 6.6e-09
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 15 CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPN 48
          C  CGK+F S+K L+GHMR HP+R WRGI PP+
Sbjct: 67 CTECGKQFGSLKALFGHMRCHPERQWRGINPPS 99

[Close]

BLAST of MS023294 vs. TAIR 10
Match: AT5G56200.1 (C2H2 type zinc finger transcription factor family )

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 15  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP 47
           C +C K+F SMK LYGHMR HPDR W+G+ PP
Sbjct: 132 CCVCYKKFTSMKALYGHMRFHPDRGWKGVLPP 163

[Close]

BLAST of MS023294 vs. TAIR 10
Match: AT4G35280.1 (C2H2-like zinc finger protein )

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-08
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 15  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP 47
           C  CG++F S K L+GHMR HP+R WRGI PP
Sbjct: 79  CTECGRKFWSWKALFGHMRCHPERQWRGINPP 110

[Close]

BLAST of MS023294 vs. TAIR 10
Match: AT4G35610.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 10  KKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTA 54
           K  P C ICG+ F S K ++GHMR H DR+++G  PP T +  A
Sbjct: 135 KGPPVCHICGRGFGSWKAVFGHMRAHRDRNYQGFLPPPTFSAGA 178

The following BLAST results are available for this feature:

BLAST of MS023294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143487.1	1.2e-31	98.46	uncharacterized protein LOC111013363 [Momordica charantia]	[more]
PHT44057.1	3.5e-12	61.40	hypothetical protein CQW23_18082 [Capsicum baccatum]	[more]
KAF3666527.1	5.9e-12	57.38	hypothetical protein FXO37_10506 [Capsicum annuum]	[more]
PHT77464.1	5.9e-12	57.38	hypothetical protein T459_20986 [Capsicum annuum]	[more]
PHU12866.1	5.9e-12	57.38	hypothetical protein BC332_19796 [Capsicum chinense]	[more]

BLAST of MS023294 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ0	9.2e-08	63.64	Zinc finger protein ZAT2 OS=Arabidopsis thaliana OX=3702 GN=ZAT2 PE=1 SV=1	[more]
O65499	6.0e-07	62.50	Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1	[more]

BLAST of MS023294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQY7	5.6e-32	98.46	uncharacterized protein LOC111013363 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A2G2WFN4	1.7e-12	61.40	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_18082 PE=4 SV=1	[more]
A0A2G3C2B5	2.9e-12	57.38	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_19796 PE=4 SV=1	[more]
A0A1U8HEI9	2.9e-12	57.38	zinc finger protein ZAT2 OS=Capsicum annuum OX=4072 GN=LOC107877438 PE=4 SV=1	[more]
A0A2G2Z677	2.9e-12	57.38	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_20986 PE=4 SV=1	[more]

BLAST of MS023294 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26940.1	2.9e-09	63.64	C2H2-type zinc finger family protein	[more]
AT2G17180.1	6.6e-09	63.64	C2H2-like zinc finger protein	[more]
AT5G56200.1	8.6e-09	65.63	C2H2 type zinc finger transcription factor family	[more]
AT4G35280.1	4.2e-08	62.50	C2H2-like zinc finger protein	[more]
AT4G35610.1	1.0e-06	47.73	zinc finger (C2H2 type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 4..39 e-value: 2.6E-5 score: 26.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..65
None	No IPR available	PANTHER	PTHR45988:SF18	C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY	coord: 10..53
IPR044653	C2H2-type zinc-finger protein AZF1/2/3-like	PANTHER	PTHR45988	C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED	coord: 10..53
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 15..35
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 13..35 score: 9.681084
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 10..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023294.1	MS023294.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity